Planaria EST Database

DrC_00848

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00848
         (990 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O01666|ATPG_DROME  ATP synthase gamma chain, mitochondria...   310   5e-84
sp|Q91VR2|ATPG_MOUSE  ATP synthase gamma chain, mitochondria...   302   1e-81
sp|P36542|ATPG_HUMAN  ATP synthase gamma chain, mitochondria...   298   2e-80
sp|Q5RBS9|ATPG_PONPY  ATP synthase gamma chain, mitochondria...   298   2e-80
sp|P05631|ATPG_BOVIN  ATP synthase gamma chain, mitochondria...   296   6e-80
sp|P35435|ATPG_RAT  ATP synthase gamma chain, mitochondrial       289   7e-78
sp|P49377|ATPG_KLULA  ATP synthase gamma chain, mitochondria...   197   5e-50
sp|P38077|ATPG_YEAST  ATP synthase gamma chain, mitochondria...   194   2e-49
sp|O74754|ATPG_SCHPO  ATP synthase gamma chain, mitochondria...   180   6e-45
sp|P26360|ATPG3_IPOBA  ATP synthase gamma chain, mitochondri...   168   2e-41

>sp|O01666|ATPG_DROME ATP synthase gamma chain, mitochondrial precursor
          Length = 297

 Score =  310 bits (793), Expect = 5e-84
 Identities = 161/286 (56%), Positives = 218/286 (76%), Gaps = 2/286 (0%)
 Frame = +1

Query: 67  SMNYMQCRTMATLKDIAVRLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARA 246
           +M   Q R MATLK I++RLKSVKNIQKIT SMKMVSAAKY +AERDL+ ARPYG GA+ 
Sbjct: 17  TMLAQQQRGMATLKMISIRLKSVKNIQKITQSMKMVSAAKYARAERDLKAARPYGIGAQQ 76

Query: 247 FYQRAEVGKQPDEL--PNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAI 420
           F+++ E+  QPDE   P +L +A+TSDRGLCGA ++ +A+ IR ++  ++ N    ++  
Sbjct: 77  FFEKTEI--QPDEKAEPKKLLIAVTSDRGLCGAVHTGVARLIRGELAQDEANT---KVFC 131

Query: 421 IGDKAKGILQRLFPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKS 600
           +GDK++ IL RL+ KNIL   +++G+ P TF DAS +A  ++   ++Y +  + +N FKS
Sbjct: 132 VGDKSRAILSRLYGKNILMVANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKS 191

Query: 601 VVSYATTEQPLFSLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKEGQCSEQSA 780
           VVSY  +  P+FS + V K+EK+ +YDS+D +VVKSY E++LASLIF+ +KEG CSEQS+
Sbjct: 192 VVSYQCSTLPIFSGSTVEKSEKLAVYDSLDSDVVKSYLEFSLASLIFYTMKEGACSEQSS 251

Query: 781 RMTAMDAASKNAGEMIGKLTLTYNRTRQAAITKELTEIVSGAAAVS 918
           RMTAMD ASKNAGEMI KLTLT+NRTRQA IT+EL EI+SGAAA++
Sbjct: 252 RMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISGAAALT 297

>sp|Q91VR2|ATPG_MOUSE ATP synthase gamma chain, mitochondrial precursor
          Length = 298

 Score =  302 bits (773), Expect = 1e-81
 Identities = 151/280 (53%), Positives = 209/280 (74%)
 Frame = +1

Query: 76  YMQCRTMATLKDIAVRLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARAFYQ 255
           ++Q R MATLKDI  RLKS+KNIQKIT SMKMV+AAKY +AER+L+PAR YG G+ A Y+
Sbjct: 19  WIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALYE 78

Query: 256 RAEVGKQPDELPNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKA 435
           +A++ K P++    L + ++SDRGLCGA +SS+AK +++++         + I  +G+K 
Sbjct: 79  KADI-KAPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKNEVAALTAAGKEVMIVGVGEKI 137

Query: 436 KGILQRLFPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKSVVSYA 615
           KGIL R      L  F D+G+KP TF DAS++A  ++N  +E+++  + FN FKSV+SY 
Sbjct: 138 KGILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKSVISYK 197

Query: 616 TTEQPLFSLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKEGQCSEQSARMTAM 795
           T E+P+FSLN +  AE +++YD +D +V+++Y EY LA+LI+++LKE   SEQSARMTAM
Sbjct: 198 TEEKPIFSLNTIATAETMSIYDDIDADVLQNYQEYNLANLIYYSLKESTTSEQSARMTAM 257

Query: 796 DAASKNAGEMIGKLTLTYNRTRQAAITKELTEIVSGAAAV 915
           D ASKNA +MI KLTLT+NRTRQA ITKEL EI+SGAAA+
Sbjct: 258 DNASKNASDMIDKLTLTFNRTRQAVITKELIEIISGAAAL 297

>sp|P36542|ATPG_HUMAN ATP synthase gamma chain, mitochondrial precursor
          Length = 298

 Score =  298 bits (763), Expect = 2e-80
 Identities = 150/280 (53%), Positives = 208/280 (74%)
 Frame = +1

Query: 76  YMQCRTMATLKDIAVRLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARAFYQ 255
           ++Q R MATLKDI  RLKS+KNIQKIT SMKMV+AAKY +AER+L+PAR YG G+ A Y+
Sbjct: 19  WIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARIYGLGSLALYE 78

Query: 256 RAEVGKQPDELPNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKA 435
           +A++ K P++    L + ++SDRGLCGA +SSIAK ++ ++         + +  IGDK 
Sbjct: 79  KADI-KGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKI 137

Query: 436 KGILQRLFPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKSVVSYA 615
           +GIL R      L  F ++G+KP TF DAS++A  ++N  +E+++  + FN F+SV+SY 
Sbjct: 138 RGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYK 197

Query: 616 TTEQPLFSLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKEGQCSEQSARMTAM 795
           T E+P+FSLN V  A+ +++YD +D +V+++Y EY LA++I+++LKE   SEQSARMTAM
Sbjct: 198 TEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAM 257

Query: 796 DAASKNAGEMIGKLTLTYNRTRQAAITKELTEIVSGAAAV 915
           D ASKNA EMI KLTLT+NRTRQA ITKEL EI+SGAAA+
Sbjct: 258 DNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 297

>sp|Q5RBS9|ATPG_PONPY ATP synthase gamma chain, mitochondrial precursor
          Length = 297

 Score =  298 bits (762), Expect = 2e-80
 Identities = 149/280 (53%), Positives = 208/280 (74%)
 Frame = +1

Query: 76  YMQCRTMATLKDIAVRLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARAFYQ 255
           ++Q R MATLKDI  RLKS+KNIQKIT SMKMV+AAKY +AER+L+PAR YG G+ A Y+
Sbjct: 19  WIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARIYGLGSLALYE 78

Query: 256 RAEVGKQPDELPNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKA 435
           +A++ K P++    L + ++SDRGLCGA +SSIAK ++ ++         + +  +GDK 
Sbjct: 79  KADI-KGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGVGDKI 137

Query: 436 KGILQRLFPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKSVVSYA 615
           +GIL R      L  F ++G+KP TF DAS++A  ++N  +E+++  + FN F+SV+SY 
Sbjct: 138 RGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYK 197

Query: 616 TTEQPLFSLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKEGQCSEQSARMTAM 795
           T E+P+FSLN V  A+ +++YD +D +V+++Y EY LA++I+++LKE   SEQSARMTAM
Sbjct: 198 TEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAM 257

Query: 796 DAASKNAGEMIGKLTLTYNRTRQAAITKELTEIVSGAAAV 915
           D ASKNA EMI KLTLT+NRTRQA ITKEL EI+SGAAA+
Sbjct: 258 DNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 297

>sp|P05631|ATPG_BOVIN ATP synthase gamma chain, mitochondrial precursor
          Length = 298

 Score =  296 bits (758), Expect = 6e-80
 Identities = 146/280 (52%), Positives = 210/280 (75%)
 Frame = +1

Query: 76  YMQCRTMATLKDIAVRLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARAFYQ 255
           ++Q R MATLKDI  RLKS+KNIQKIT SMKMV+AAKY +AER+L+PAR YG G+ A Y+
Sbjct: 19  WIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYE 78

Query: 256 RAEVGKQPDELPNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKA 435
           +A++ K P++    L + ++SDRGLCGA +SS+AK ++ +  +       ++I  +GDK 
Sbjct: 79  KADI-KTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKI 137

Query: 436 KGILQRLFPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKSVVSYA 615
           + IL R      L  F ++G++P TF DAS++A  ++N  +E+++  + FN F+SV+SY 
Sbjct: 138 RSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYK 197

Query: 616 TTEQPLFSLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKEGQCSEQSARMTAM 795
           T E+P+FSL+ ++ AE +++YD +D +V+++Y EY+LA++I+++LKE   SEQSARMTAM
Sbjct: 198 TEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAM 257

Query: 796 DAASKNAGEMIGKLTLTYNRTRQAAITKELTEIVSGAAAV 915
           D ASKNA EMI KLTLT+NRTRQA ITKEL EI+SGAAA+
Sbjct: 258 DNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 297

>sp|P35435|ATPG_RAT ATP synthase gamma chain, mitochondrial
          Length = 273

 Score =  289 bits (740), Expect = 7e-78
 Identities = 147/273 (53%), Positives = 201/273 (73%)
 Frame = +1

Query: 97  ATLKDIAVRLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARAFYQRAEVGKQ 276
           ATLKDI  RLKS+KNIQKIT SMKMV+AAKY +AER+L+PAR YG G+ A Y++AE+ K 
Sbjct: 1   ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALYEKAEI-KG 59

Query: 277 PDELPNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKAKGILQRL 456
           P++    L + ++SDRGLCGA +SS+AK +++ +         + I  IG+K K IL R 
Sbjct: 60  PEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKNDMAALTAAGKEVMIVGIGEKIKSILYRT 119

Query: 457 FPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKSVVSYATTEQPLF 636
                L  F D+G+KP TF DAS++A  ++N  +E+++  + FN FKSV+SY T E+P+F
Sbjct: 120 HSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKSVISYKTEEKPIF 179

Query: 637 SLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKEGQCSEQSARMTAMDAASKNA 816
           S + V  AE +++YD +D +V+++Y EY LA++I+++LKE   SEQSARMTAMD ASKNA
Sbjct: 180 SFSTVVAAENMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNA 239

Query: 817 GEMIGKLTLTYNRTRQAAITKELTEIVSGAAAV 915
            +MI KLTLT+NRTRQA ITKEL EI+SGAAA+
Sbjct: 240 SDMIDKLTLTFNRTRQAVITKELIEIISGAAAL 272

>sp|P49377|ATPG_KLULA ATP synthase gamma chain, mitochondrial precursor
          Length = 289

 Score =  197 bits (500), Expect = 5e-50
 Identities = 112/278 (40%), Positives = 170/278 (61%), Gaps = 2/278 (0%)
 Frame = +1

Query: 88  RTMATLKDIAVRLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARAFYQRAEV 267
           R  ATL++I  RLKS+KNI+KIT +MK+V++ + +KAER    A+ Y     AFY+ AE 
Sbjct: 15  RNYATLREIETRLKSIKNIEKITKTMKIVASTRLSKAERAKNSAKEYALADAAFYKNAET 74

Query: 268 GKQPDELPNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKAKGIL 447
               D     L +AITSD+GLCG+ +S +AKA+R Q+        N  +  IGDK KG L
Sbjct: 75  VPLEDAEKKDLIIAITSDKGLCGSIHSQLAKAVRLQLKQT----PNADVVAIGDKVKGQL 130

Query: 448 QRLFPKNILWHFSDIGKKPATFADASLMAEAII-NLEFEYNQAVMFFNTFKSVVSYATTE 624
            R    N+ + F+ +GK+  TF + SL+A  I+      Y +  +F+N   S +S+  + 
Sbjct: 131 LRTNSDNLKFAFNGVGKEAPTFEETSLIANKILEGGASNYKKVSIFWNDPISSLSFEPSN 190

Query: 625 QPLFSLNAVTKAEKINLYD-SVDENVVKSYNEYTLASLIFFALKEGQCSEQSARMTAMDA 801
           +P+F+  A+ ++   + ++   D NV +   E+TL++ I  A+ EG  +E SAR  AMD 
Sbjct: 191 KPVFNAAAIEQSPSFSKFEIDADNNVSQDLFEFTLSNEILAAMAEGYAAEVSARRNAMDN 250

Query: 802 ASKNAGEMIGKLTLTYNRTRQAAITKELTEIVSGAAAV 915
           ASKNAG+MI   ++ YNRTRQA IT EL +I++GA+++
Sbjct: 251 ASKNAGDMINSYSILYNRTRQAVITNELVDIITGASSL 288

>sp|P38077|ATPG_YEAST ATP synthase gamma chain, mitochondrial precursor
          Length = 311

 Score =  194 bits (494), Expect = 2e-49
 Identities = 112/284 (39%), Positives = 173/284 (60%), Gaps = 8/284 (2%)
 Frame = +1

Query: 88  RTMATLKDIAVRLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARAFYQRAEV 267
           RT ATLK++ +RLKS+KNI+KIT +MK+V++ + +KAE+    A+      + FY+ AE 
Sbjct: 31  RTYATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDEAEQLFYKNAET 90

Query: 268 GKQPDEL-----PNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDK 432
                E      P  L VAITSD+GLCG+ +S +AKA+R  +N       N  I  IGDK
Sbjct: 91  KNLDVEATETGAPKELIVAITSDKGLCGSIHSQLAKAVRRHLNDQP----NADIVTIGDK 146

Query: 433 AKGILQRLFPKNILWHFSDIGKKPATFADASLMAEAIINL--EFEYNQAVMFFNTFKSVV 606
            K  L R  P NI    + IGK   TF +++L+A+ ++++     Y +  +F+N   S +
Sbjct: 147 IKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSL 206

Query: 607 SYATTEQPLFSLNAVTKAEKINLYD-SVDENVVKSYNEYTLASLIFFALKEGQCSEQSAR 783
           S+  +E+P+F+   + ++     ++   D NV +   EYTLA+ +  A+ +G  +E SAR
Sbjct: 207 SFEPSEKPIFNAKTIEQSPSFGKFEIDTDANVPRDLFEYTLANQMLTAMAQGYAAEISAR 266

Query: 784 MTAMDAASKNAGEMIGKLTLTYNRTRQAAITKELTEIVSGAAAV 915
             AMD ASKNAG+MI + ++ YNRTRQA IT EL +I++GA+++
Sbjct: 267 RNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDIITGASSL 310

>sp|O74754|ATPG_SCHPO ATP synthase gamma chain, mitochondrial precursor
          Length = 301

 Score =  180 bits (456), Expect = 6e-45
 Identities = 101/274 (36%), Positives = 167/274 (60%)
 Frame = +1

Query: 97  ATLKDIAVRLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARAFYQRAEVGKQ 276
           ATLK+I  RLKS+KNI+KIT ++K V+  K  +A+R +  +  Y   +   ++  E G +
Sbjct: 32  ATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVFK--EAGTK 89

Query: 277 PDELPNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKAKGILQRL 456
             E    L VA +SD+GLCG  +SSI++ IR ++ H+    +N  + I+G+K +  L R 
Sbjct: 90  APEEGKTLMVACSSDKGLCGGIHSSISRLIRREL-HDPKTFENTSLCILGEKVRTQLLRF 148

Query: 457 FPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKSVVSYATTEQPLF 636
            P++    F+ IG    +F +A  ++  I+    +Y++ V+ +N F S VS+ T  + L+
Sbjct: 149 CPESFYLTFAHIGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVSFETVMKNLY 208

Query: 637 SLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKEGQCSEQSARMTAMDAASKNA 816
           +  A+ ++  ++ Y+  DE V +   E+  A+ IF A+ E  CSE S+R  AM+ ASK+A
Sbjct: 209 TTKAINESPNLSAYEVSDE-VHQPLMEFAFANAIFSAMAEAHCSEMSSRRNAMENASKSA 267

Query: 817 GEMIGKLTLTYNRTRQAAITKELTEIVSGAAAVS 918
           G+MI K ++ YNR RQA+IT EL +IV+GA +++
Sbjct: 268 GDMINKFSIQYNRQRQASITNELIDIVTGANSLA 301

>sp|P26360|ATPG3_IPOBA ATP synthase gamma chain, mitochondrial precursor
          Length = 326

 Score =  168 bits (426), Expect = 2e-41
 Identities = 110/280 (39%), Positives = 165/280 (58%), Gaps = 15/280 (5%)
 Frame = +1

Query: 121 RLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARAFYQ--RAEVGKQPD-ELP 291
           R+KSVKNIQKIT +MKMV+A+K       LR  +     +R  +Q   A +G  P  ++ 
Sbjct: 54  RMKSVKNIQKITKAMKMVAASK-------LRAIQTRAENSRGLWQPFTALLGDTPSVDVK 106

Query: 292 NRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKAKGILQRLFPKNI 471
             + + I+SD+GLCG  NS+  K  R+    N       +  I+G+KAK  L R   K+I
Sbjct: 107 KNVIITISSDKGLCGGINSTSVKTSRNIHKLNSGPEKENKYVILGEKAKAQLVRDSKKDI 166

Query: 472 LWHFSDIGKKPATFADASLMAEAII-NLEFEYNQAVMFFNTFKSVVSYATTEQPLFSLNA 648
               +++ K P  +   S++A+ I+ N+EF+  + V  FN F+SVVS+  T   + S   
Sbjct: 167 ELIITELQKNPLNYTQVSVVADDILKNVEFDALRIV--FNKFQSVVSFVPTMSTVLSPEV 224

Query: 649 VTKAE----KINLYDSVD-------ENVVKSYNEYTLASLIFFALKEGQCSEQSARMTAM 795
           V +      K+   DS +         V+++  E+  +S++F A+ E  CSEQ ARM+AM
Sbjct: 225 VERESESGGKLGDLDSYEIEGAESKSEVLQNLTEFQFSSVLFNAVLENACSEQGARMSAM 284

Query: 796 DAASKNAGEMIGKLTLTYNRTRQAAITKELTEIVSGAAAV 915
           D++S+NAGEM+ +LTLTYNRTRQA+IT EL EI+SGA+A+
Sbjct: 285 DSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 324

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,929,670
Number of Sequences: 369166
Number of extensions: 2090865
Number of successful extensions: 4863
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4569
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10431168110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00848

  1. Dr_sW_002_N01
  2. Dr_sW_021_K09
  3. Dr_sW_003_F19
  4. Dr_sW_001_K03
  5. Dr_sW_016_E06