Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_F19
(718 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O01666|ATPG_DROME ATP synthase gamma chain, mitochondria... 228 2e-59
sp|Q91VR2|ATPG_MOUSE ATP synthase gamma chain, mitochondria... 219 7e-57
sp|P36542|ATPG_HUMAN ATP synthase gamma chain, mitochondria... 218 2e-56
sp|Q5RBS9|ATPG_PONPY ATP synthase gamma chain, mitochondria... 217 2e-56
sp|P05631|ATPG_BOVIN ATP synthase gamma chain, mitochondria... 213 3e-55
sp|P35435|ATPG_RAT ATP synthase gamma chain, mitochondrial 213 3e-55
sp|P38077|ATPG_YEAST ATP synthase gamma chain, mitochondria... 150 4e-36
sp|P49377|ATPG_KLULA ATP synthase gamma chain, mitochondria... 145 1e-34
sp|O74754|ATPG_SCHPO ATP synthase gamma chain, mitochondria... 143 4e-34
sp|P26360|ATPG3_IPOBA ATP synthase gamma chain, mitochondri... 141 2e-33
>sp|O01666|ATPG_DROME ATP synthase gamma chain, mitochondrial precursor
Length = 297
Score = 228 bits (580), Expect = 2e-59
Identities = 112/210 (53%), Positives = 159/210 (75%)
Frame = +3
Query: 18 PNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKAKGILQRLFPKN 197
P +L +A+TSDRGLCGA ++ +A+ IR ++ ++ N ++ +GDK++ IL RL+ KN
Sbjct: 91 PKKLLIAVTSDRGLCGAVHTGVARLIRGELAQDEANT---KVFCVGDKSRAILSRLYGKN 147
Query: 198 ILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKSVVSYATTEQPLFSLNA 377
IL +++G+ P TF DAS +A ++ ++Y + + +N FKSVVSY + P+FS +
Sbjct: 148 ILMVANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKSVVSYQCSTLPIFSGST 207
Query: 378 VTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKEGQCSEQSARMTAMDAASKNAGEMI 557
V K+EK+ +YDS+D +VVKSY E++LASLIF+ +KEG CSEQS+RMTAMD ASKNAGEMI
Sbjct: 208 VEKSEKLAVYDSLDSDVVKSYLEFSLASLIFYTMKEGACSEQSSRMTAMDNASKNAGEMI 267
Query: 558 GKLTLTYNRTRQAAITKELTEIVSGAAAVS 647
KLTLT+NRTRQA IT+EL EI+SGAAA++
Sbjct: 268 DKLTLTFNRTRQAVITRELIEIISGAAALT 297
>sp|Q91VR2|ATPG_MOUSE ATP synthase gamma chain, mitochondrial precursor
Length = 298
Score = 219 bits (557), Expect = 7e-57
Identities = 107/206 (51%), Positives = 151/206 (73%)
Frame = +3
Query: 27 LYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKAKGILQRLFPKNILW 206
L + ++SDRGLCGA +SS+AK +++++ + I +G+K KGIL R L
Sbjct: 92 LIIGVSSDRGLCGAIHSSVAKQMKNEVAALTAAGKEVMIVGVGEKIKGILYRTHSDQFLV 151
Query: 207 HFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKSVVSYATTEQPLFSLNAVTK 386
F D+G+KP TF DAS++A ++N +E+++ + FN FKSV+SY T E+P+FSLN +
Sbjct: 152 SFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKSVISYKTEEKPIFSLNTIAT 211
Query: 387 AEKINLYDSVDENVVKSYNEYTLASLIFFALKEGQCSEQSARMTAMDAASKNAGEMIGKL 566
AE +++YD +D +V+++Y EY LA+LI+++LKE SEQSARMTAMD ASKNA +MI KL
Sbjct: 212 AETMSIYDDIDADVLQNYQEYNLANLIYYSLKESTTSEQSARMTAMDNASKNASDMIDKL 271
Query: 567 TLTYNRTRQAAITKELTEIVSGAAAV 644
TLT+NRTRQA ITKEL EI+SGAAA+
Sbjct: 272 TLTFNRTRQAVITKELIEIISGAAAL 297
>sp|P36542|ATPG_HUMAN ATP synthase gamma chain, mitochondrial precursor
Length = 298
Score = 218 bits (554), Expect = 2e-56
Identities = 107/214 (50%), Positives = 152/214 (71%)
Frame = +3
Query: 3 GTRELPNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKAKGILQR 182
G + L + ++SDRGLCGA +SSIAK ++ ++ + + IGDK +GIL R
Sbjct: 84 GPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYR 143
Query: 183 LFPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKSVVSYATTEQPL 362
L F ++G+KP TF DAS++A ++N +E+++ + FN F+SV+SY T E+P+
Sbjct: 144 THSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYKTEEKPI 203
Query: 363 FSLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKEGQCSEQSARMTAMDAASKN 542
FSLN V A+ +++YD +D +V+++Y EY LA++I+++LKE SEQSARMTAMD ASKN
Sbjct: 204 FSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKN 263
Query: 543 AGEMIGKLTLTYNRTRQAAITKELTEIVSGAAAV 644
A EMI KLTLT+NRTRQA ITKEL EI+SGAAA+
Sbjct: 264 ASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 297
>sp|Q5RBS9|ATPG_PONPY ATP synthase gamma chain, mitochondrial precursor
Length = 297
Score = 217 bits (553), Expect = 2e-56
Identities = 106/214 (49%), Positives = 152/214 (71%)
Frame = +3
Query: 3 GTRELPNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKAKGILQR 182
G + L + ++SDRGLCGA +SSIAK ++ ++ + + +GDK +GIL R
Sbjct: 84 GPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGVGDKIRGILYR 143
Query: 183 LFPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKSVVSYATTEQPL 362
L F ++G+KP TF DAS++A ++N +E+++ + FN F+SV+SY T E+P+
Sbjct: 144 THSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYKTEEKPI 203
Query: 363 FSLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKEGQCSEQSARMTAMDAASKN 542
FSLN V A+ +++YD +D +V+++Y EY LA++I+++LKE SEQSARMTAMD ASKN
Sbjct: 204 FSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKN 263
Query: 543 AGEMIGKLTLTYNRTRQAAITKELTEIVSGAAAV 644
A EMI KLTLT+NRTRQA ITKEL EI+SGAAA+
Sbjct: 264 ASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 297
>sp|P05631|ATPG_BOVIN ATP synthase gamma chain, mitochondrial precursor
Length = 298
Score = 213 bits (543), Expect = 3e-55
Identities = 102/206 (49%), Positives = 152/206 (73%)
Frame = +3
Query: 27 LYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKAKGILQRLFPKNILW 206
L + ++SDRGLCGA +SS+AK ++ + + ++I +GDK + IL R L
Sbjct: 92 LIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLV 151
Query: 207 HFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKSVVSYATTEQPLFSLNAVTK 386
F ++G++P TF DAS++A ++N +E+++ + FN F+SV+SY T E+P+FSL+ ++
Sbjct: 152 TFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTISS 211
Query: 387 AEKINLYDSVDENVVKSYNEYTLASLIFFALKEGQCSEQSARMTAMDAASKNAGEMIGKL 566
AE +++YD +D +V+++Y EY+LA++I+++LKE SEQSARMTAMD ASKNA EMI KL
Sbjct: 212 AESMSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKL 271
Query: 567 TLTYNRTRQAAITKELTEIVSGAAAV 644
TLT+NRTRQA ITKEL EI+SGAAA+
Sbjct: 272 TLTFNRTRQAVITKELIEIISGAAAL 297
>sp|P35435|ATPG_RAT ATP synthase gamma chain, mitochondrial
Length = 273
Score = 213 bits (543), Expect = 3e-55
Identities = 106/214 (49%), Positives = 150/214 (70%)
Frame = +3
Query: 3 GTRELPNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKAKGILQR 182
G + L + ++SDRGLCGA +SS+AK +++ + + I IG+K K IL R
Sbjct: 59 GPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKNDMAALTAAGKEVMIVGIGEKIKSILYR 118
Query: 183 LFPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKSVVSYATTEQPL 362
L F D+G+KP TF DAS++A ++N +E+++ + FN FKSV+SY T E+P+
Sbjct: 119 THSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKSVISYKTEEKPI 178
Query: 363 FSLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKEGQCSEQSARMTAMDAASKN 542
FS + V AE +++YD +D +V+++Y EY LA++I+++LKE SEQSARMTAMD ASKN
Sbjct: 179 FSFSTVVAAENMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKN 238
Query: 543 AGEMIGKLTLTYNRTRQAAITKELTEIVSGAAAV 644
A +MI KLTLT+NRTRQA ITKEL EI+SGAAA+
Sbjct: 239 ASDMIDKLTLTFNRTRQAVITKELIEIISGAAAL 272
>sp|P38077|ATPG_YEAST ATP synthase gamma chain, mitochondrial precursor
Length = 311
Score = 150 bits (378), Expect = 4e-36
Identities = 84/212 (39%), Positives = 130/212 (61%), Gaps = 3/212 (1%)
Frame = +3
Query: 18 PNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKAKGILQRLFPKN 197
P L VAITSD+GLCG+ +S +AKA+R +N N I IGDK K L R P N
Sbjct: 103 PKELIVAITSDKGLCGSIHSQLAKAVRRHLNDQP----NADIVTIGDKIKMQLLRTHPNN 158
Query: 198 ILWHFSDIGKKPATFADASLMAEAIINL--EFEYNQAVMFFNTFKSVVSYATTEQPLFSL 371
I + IGK TF +++L+A+ ++++ Y + +F+N S +S+ +E+P+F+
Sbjct: 159 IKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSLSFEPSEKPIFNA 218
Query: 372 NAVTKAEKINLYD-SVDENVVKSYNEYTLASLIFFALKEGQCSEQSARMTAMDAASKNAG 548
+ ++ ++ D NV + EYTLA+ + A+ +G +E SAR AMD ASKNAG
Sbjct: 219 KTIEQSPSFGKFEIDTDANVPRDLFEYTLANQMLTAMAQGYAAEISARRNAMDNASKNAG 278
Query: 549 EMIGKLTLTYNRTRQAAITKELTEIVSGAAAV 644
+MI + ++ YNRTRQA IT EL +I++GA+++
Sbjct: 279 DMINRYSILYNRTRQAVITNELVDIITGASSL 310
>sp|P49377|ATPG_KLULA ATP synthase gamma chain, mitochondrial precursor
Length = 289
Score = 145 bits (366), Expect = 1e-34
Identities = 82/208 (39%), Positives = 128/208 (61%), Gaps = 2/208 (0%)
Frame = +3
Query: 27 LYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKAKGILQRLFPKNILW 206
L +AITSD+GLCG+ +S +AKA+R Q+ N + IGDK KG L R N+ +
Sbjct: 85 LIIAITSDKGLCGSIHSQLAKAVRLQLKQTP----NADVVAIGDKVKGQLLRTNSDNLKF 140
Query: 207 HFSDIGKKPATFADASLMAEAIINL-EFEYNQAVMFFNTFKSVVSYATTEQPLFSLNAVT 383
F+ +GK+ TF + SL+A I+ Y + +F+N S +S+ + +P+F+ A+
Sbjct: 141 AFNGVGKEAPTFEETSLIANKILEGGASNYKKVSIFWNDPISSLSFEPSNKPVFNAAAIE 200
Query: 384 KAEKINLYD-SVDENVVKSYNEYTLASLIFFALKEGQCSEQSARMTAMDAASKNAGEMIG 560
++ + ++ D NV + E+TL++ I A+ EG +E SAR AMD ASKNAG+MI
Sbjct: 201 QSPSFSKFEIDADNNVSQDLFEFTLSNEILAAMAEGYAAEVSARRNAMDNASKNAGDMIN 260
Query: 561 KLTLTYNRTRQAAITKELTEIVSGAAAV 644
++ YNRTRQA IT EL +I++GA+++
Sbjct: 261 SYSILYNRTRQAVITNELVDIITGASSL 288
>sp|O74754|ATPG_SCHPO ATP synthase gamma chain, mitochondrial precursor
Length = 301
Score = 143 bits (361), Expect = 4e-34
Identities = 77/207 (37%), Positives = 129/207 (62%)
Frame = +3
Query: 27 LYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKAKGILQRLFPKNILW 206
L VA +SD+GLCG +SSI++ IR ++ H+ +N + I+G+K + L R P++
Sbjct: 97 LMVACSSDKGLCGGIHSSISRLIRREL-HDPKTFENTSLCILGEKVRTQLLRFCPESFYL 155
Query: 207 HFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKSVVSYATTEQPLFSLNAVTK 386
F+ IG +F +A ++ I+ +Y++ V+ +N F S VS+ T + L++ A+ +
Sbjct: 156 TFAHIGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVSFETVMKNLYTTKAINE 215
Query: 387 AEKINLYDSVDENVVKSYNEYTLASLIFFALKEGQCSEQSARMTAMDAASKNAGEMIGKL 566
+ ++ Y+ DE V + E+ A+ IF A+ E CSE S+R AM+ ASK+AG+MI K
Sbjct: 216 SPNLSAYEVSDE-VHQPLMEFAFANAIFSAMAEAHCSEMSSRRNAMENASKSAGDMINKF 274
Query: 567 TLTYNRTRQAAITKELTEIVSGAAAVS 647
++ YNR RQA+IT EL +IV+GA +++
Sbjct: 275 SIQYNRQRQASITNELIDIVTGANSLA 301
>sp|P26360|ATPG3_IPOBA ATP synthase gamma chain, mitochondrial precursor
Length = 326
Score = 141 bits (355), Expect = 2e-33
Identities = 86/223 (38%), Positives = 133/223 (59%), Gaps = 12/223 (5%)
Frame = +3
Query: 12 ELPNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKAKGILQRLFP 191
++ + + I+SD+GLCG NS+ K R+ N + I+G+KAK L R
Sbjct: 104 DVKKNVIITISSDKGLCGGINSTSVKTSRNIHKLNSGPEKENKYVILGEKAKAQLVRDSK 163
Query: 192 KNILWHFSDIGKKPATFADASLMAEAII-NLEFEYNQAVMFFNTFKSVVSYATTEQPLFS 368
K+I +++ K P + S++A+ I+ N+EF+ + V FN F+SVVS+ T + S
Sbjct: 164 KDIELIITELQKNPLNYTQVSVVADDILKNVEFDALRIV--FNKFQSVVSFVPTMSTVLS 221
Query: 369 LNAVTKAE----KINLYDSVD-------ENVVKSYNEYTLASLIFFALKEGQCSEQSARM 515
V + K+ DS + V+++ E+ +S++F A+ E CSEQ ARM
Sbjct: 222 PEVVERESESGGKLGDLDSYEIEGAESKSEVLQNLTEFQFSSVLFNAVLENACSEQGARM 281
Query: 516 TAMDAASKNAGEMIGKLTLTYNRTRQAAITKELTEIVSGAAAV 644
+AMD++S+NAGEM+ +LTLTYNRTRQA+IT EL EI+SGA+A+
Sbjct: 282 SAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 324
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,498,076
Number of Sequences: 369166
Number of extensions: 1494563
Number of successful extensions: 3540
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3400
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6365071885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)