Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_E06
(616 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O01666|ATPG_DROME ATP synthase gamma chain, mitochondria... 198 1e-50
sp|Q91VR2|ATPG_MOUSE ATP synthase gamma chain, mitochondria... 194 2e-49
sp|P36542|ATPG_HUMAN ATP synthase gamma chain, mitochondria... 191 1e-48
sp|Q5RBS9|ATPG_PONPY ATP synthase gamma chain, mitochondria... 191 2e-48
sp|P05631|ATPG_BOVIN ATP synthase gamma chain, mitochondria... 189 5e-48
sp|P35435|ATPG_RAT ATP synthase gamma chain, mitochondrial 188 8e-48
sp|P26360|ATPG3_IPOBA ATP synthase gamma chain, mitochondri... 121 1e-27
sp|O74754|ATPG_SCHPO ATP synthase gamma chain, mitochondria... 120 4e-27
sp|P38077|ATPG_YEAST ATP synthase gamma chain, mitochondria... 119 8e-27
sp|Q96250|ATPG3_ARATH ATP synthase gamma chain, mitochondri... 118 1e-26
>sp|O01666|ATPG_DROME ATP synthase gamma chain, mitochondrial precursor
Length = 297
Score = 198 bits (503), Expect = 1e-50
Identities = 97/172 (56%), Positives = 133/172 (77%)
Frame = +2
Query: 29 NIRIAIIGDKAKGILQRLFPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMF 208
N ++ +GDK++ IL RL+ KNIL +++G+ P TF DAS +A ++ ++Y + +
Sbjct: 126 NTKVFCVGDKSRAILSRLYGKNILMVANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIV 185
Query: 209 FNTFKSVVSYATTEQPLFSLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKEGQ 388
+N FKSVVSY + P+FS + V K+EK+ +YDS+D +VVKSY E++LASLIF+ +KEG
Sbjct: 186 YNRFKSVVSYQCSTLPIFSGSTVEKSEKLAVYDSLDSDVVKSYLEFSLASLIFYTMKEGA 245
Query: 389 CSEQSARMTAMDAASKNAGEMIGKLTLTYNRTRQAAITKELTEIVSGAAAVS 544
CSEQS+RMTAMD ASKNAGEMI KLTLT+NRTRQA IT+EL EI+SGAAA++
Sbjct: 246 CSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISGAAALT 297
>sp|Q91VR2|ATPG_MOUSE ATP synthase gamma chain, mitochondrial precursor
Length = 298
Score = 194 bits (492), Expect = 2e-49
Identities = 94/170 (55%), Positives = 128/170 (75%)
Frame = +2
Query: 32 IRIAIIGDKAKGILQRLFPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFF 211
+ I +G+K KGIL R L F D+G+KP TF DAS++A ++N +E+++ + F
Sbjct: 128 VMIVGVGEKIKGILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIF 187
Query: 212 NTFKSVVSYATTEQPLFSLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKEGQC 391
N FKSV+SY T E+P+FSLN + AE +++YD +D +V+++Y EY LA+LI+++LKE
Sbjct: 188 NQFKSVISYKTEEKPIFSLNTIATAETMSIYDDIDADVLQNYQEYNLANLIYYSLKESTT 247
Query: 392 SEQSARMTAMDAASKNAGEMIGKLTLTYNRTRQAAITKELTEIVSGAAAV 541
SEQSARMTAMD ASKNA +MI KLTLT+NRTRQA ITKEL EI+SGAAA+
Sbjct: 248 SEQSARMTAMDNASKNASDMIDKLTLTFNRTRQAVITKELIEIISGAAAL 297
>sp|P36542|ATPG_HUMAN ATP synthase gamma chain, mitochondrial precursor
Length = 298
Score = 191 bits (485), Expect = 1e-48
Identities = 92/165 (55%), Positives = 126/165 (76%)
Frame = +2
Query: 47 IGDKAKGILQRLFPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKS 226
IGDK +GIL R L F ++G+KP TF DAS++A ++N +E+++ + FN F+S
Sbjct: 133 IGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRS 192
Query: 227 VVSYATTEQPLFSLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKEGQCSEQSA 406
V+SY T E+P+FSLN V A+ +++YD +D +V+++Y EY LA++I+++LKE SEQSA
Sbjct: 193 VISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSA 252
Query: 407 RMTAMDAASKNAGEMIGKLTLTYNRTRQAAITKELTEIVSGAAAV 541
RMTAMD ASKNA EMI KLTLT+NRTRQA ITKEL EI+SGAAA+
Sbjct: 253 RMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 297
>sp|Q5RBS9|ATPG_PONPY ATP synthase gamma chain, mitochondrial precursor
Length = 297
Score = 191 bits (484), Expect = 2e-48
Identities = 91/165 (55%), Positives = 126/165 (76%)
Frame = +2
Query: 47 IGDKAKGILQRLFPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKS 226
+GDK +GIL R L F ++G+KP TF DAS++A ++N +E+++ + FN F+S
Sbjct: 133 VGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRS 192
Query: 227 VVSYATTEQPLFSLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKEGQCSEQSA 406
V+SY T E+P+FSLN V A+ +++YD +D +V+++Y EY LA++I+++LKE SEQSA
Sbjct: 193 VISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSA 252
Query: 407 RMTAMDAASKNAGEMIGKLTLTYNRTRQAAITKELTEIVSGAAAV 541
RMTAMD ASKNA EMI KLTLT+NRTRQA ITKEL EI+SGAAA+
Sbjct: 253 RMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 297
>sp|P05631|ATPG_BOVIN ATP synthase gamma chain, mitochondrial precursor
Length = 298
Score = 189 bits (480), Expect = 5e-48
Identities = 89/170 (52%), Positives = 130/170 (76%)
Frame = +2
Query: 32 IRIAIIGDKAKGILQRLFPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFF 211
++I +GDK + IL R L F ++G++P TF DAS++A ++N +E+++ + F
Sbjct: 128 VKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIF 187
Query: 212 NTFKSVVSYATTEQPLFSLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKEGQC 391
N F+SV+SY T E+P+FSL+ ++ AE +++YD +D +V+++Y EY+LA++I+++LKE
Sbjct: 188 NRFRSVISYKTEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLANIIYYSLKESTT 247
Query: 392 SEQSARMTAMDAASKNAGEMIGKLTLTYNRTRQAAITKELTEIVSGAAAV 541
SEQSARMTAMD ASKNA EMI KLTLT+NRTRQA ITKEL EI+SGAAA+
Sbjct: 248 SEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 297
>sp|P35435|ATPG_RAT ATP synthase gamma chain, mitochondrial
Length = 273
Score = 188 bits (478), Expect = 8e-48
Identities = 92/170 (54%), Positives = 126/170 (74%)
Frame = +2
Query: 32 IRIAIIGDKAKGILQRLFPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFF 211
+ I IG+K K IL R L F D+G+KP TF DAS++A ++N +E+++ + F
Sbjct: 103 VMIVGIGEKIKSILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIF 162
Query: 212 NTFKSVVSYATTEQPLFSLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKEGQC 391
N FKSV+SY T E+P+FS + V AE +++YD +D +V+++Y EY LA++I+++LKE
Sbjct: 163 NQFKSVISYKTEEKPIFSFSTVVAAENMSIYDDIDADVLQNYQEYNLANIIYYSLKESTT 222
Query: 392 SEQSARMTAMDAASKNAGEMIGKLTLTYNRTRQAAITKELTEIVSGAAAV 541
SEQSARMTAMD ASKNA +MI KLTLT+NRTRQA ITKEL EI+SGAAA+
Sbjct: 223 SEQSARMTAMDNASKNASDMIDKLTLTFNRTRQAVITKELIEIISGAAAL 272
>sp|P26360|ATPG3_IPOBA ATP synthase gamma chain, mitochondrial precursor
Length = 326
Score = 121 bits (304), Expect = 1e-27
Identities = 74/181 (40%), Positives = 113/181 (62%), Gaps = 12/181 (6%)
Frame = +2
Query: 35 RIAIIGDKAKGILQRLFPKNILWHFSDIGKKPATFADASLMAEAII-NLEFEYNQAVMFF 211
+ I+G+KAK L R K+I +++ K P + S++A+ I+ N+EF+ + V F
Sbjct: 146 KYVILGEKAKAQLVRDSKKDIELIITELQKNPLNYTQVSVVADDILKNVEFDALRIV--F 203
Query: 212 NTFKSVVSYATTEQPLFSLNAVTKAE----KINLYDSVD-------ENVVKSYNEYTLAS 358
N F+SVVS+ T + S V + K+ DS + V+++ E+ +S
Sbjct: 204 NKFQSVVSFVPTMSTVLSPEVVERESESGGKLGDLDSYEIEGAESKSEVLQNLTEFQFSS 263
Query: 359 LIFFALKEGQCSEQSARMTAMDAASKNAGEMIGKLTLTYNRTRQAAITKELTEIVSGAAA 538
++F A+ E CSEQ ARM+AMD++S+NAGEM+ +LTLTYNRTRQA+IT EL EI+SGA+A
Sbjct: 264 VLFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASA 323
Query: 539 V 541
+
Sbjct: 324 L 324
>sp|O74754|ATPG_SCHPO ATP synthase gamma chain, mitochondrial precursor
Length = 301
Score = 120 bits (300), Expect = 4e-27
Identities = 63/179 (35%), Positives = 108/179 (60%)
Frame = +2
Query: 8 HNKDNIDNIRIAIIGDKAKGILQRLFPKNILWHFSDIGKKPATFADASLMAEAIINLEFE 187
H+ +N + I+G+K + L R P++ F+ IG +F +A ++ I+ +
Sbjct: 124 HDPKTFENTSLCILGEKVRTQLLRFCPESFYLTFAHIGGASPSFEEALQISSNILEHAKD 183
Query: 188 YNQAVMFFNTFKSVVSYATTEQPLFSLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIF 367
Y++ V+ +N F S VS+ T + L++ A+ ++ ++ Y+ DE V + E+ A+ IF
Sbjct: 184 YDRIVLVYNKFASAVSFETVMKNLYTTKAINESPNLSAYEVSDE-VHQPLMEFAFANAIF 242
Query: 368 FALKEGQCSEQSARMTAMDAASKNAGEMIGKLTLTYNRTRQAAITKELTEIVSGAAAVS 544
A+ E CSE S+R AM+ ASK+AG+MI K ++ YNR RQA+IT EL +IV+GA +++
Sbjct: 243 SAMAEAHCSEMSSRRNAMENASKSAGDMINKFSIQYNRQRQASITNELIDIVTGANSLA 301
>sp|P38077|ATPG_YEAST ATP synthase gamma chain, mitochondrial precursor
Length = 311
Score = 119 bits (297), Expect = 8e-27
Identities = 66/174 (37%), Positives = 106/174 (60%), Gaps = 3/174 (1%)
Frame = +2
Query: 29 NIRIAIIGDKAKGILQRLFPKNILWHFSDIGKKPATFADASLMAEAIINL--EFEYNQAV 202
N I IGDK K L R P NI + IGK TF +++L+A+ ++++ Y +
Sbjct: 137 NADIVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKIS 196
Query: 203 MFFNTFKSVVSYATTEQPLFSLNAVTKAEKINLYD-SVDENVVKSYNEYTLASLIFFALK 379
+F+N S +S+ +E+P+F+ + ++ ++ D NV + EYTLA+ + A+
Sbjct: 197 IFYNDPVSSLSFEPSEKPIFNAKTIEQSPSFGKFEIDTDANVPRDLFEYTLANQMLTAMA 256
Query: 380 EGQCSEQSARMTAMDAASKNAGEMIGKLTLTYNRTRQAAITKELTEIVSGAAAV 541
+G +E SAR AMD ASKNAG+MI + ++ YNRTRQA IT EL +I++GA+++
Sbjct: 257 QGYAAEISARRNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDIITGASSL 310
>sp|Q96250|ATPG3_ARATH ATP synthase gamma chain, mitochondrial precursor
Length = 325
Score = 118 bits (296), Expect = 1e-26
Identities = 69/182 (37%), Positives = 113/182 (62%), Gaps = 12/182 (6%)
Frame = +2
Query: 32 IRIAIIGDKAKGILQRLFPKNILWHFSDIGKKPATFADASLMAEAII-NLEFEYNQAVMF 208
++ I+G+KAK I+ R +I+ +++ K P +A S++A+ I+ N+EF+ + V
Sbjct: 142 VQFVIVGEKAKAIMFRDSKNDIVLSVTELNKNPLNYAQVSVLADDILKNVEFDALRIV-- 199
Query: 209 FNTFKSVVSYATTEQPLFSLNAVTKAE----KINLYDSVD-------ENVVKSYNEYTLA 355
+N F SVV++ T + S + K K+ DS + ++++ E+ +
Sbjct: 200 YNKFHSVVAFLPTVSTVLSPEIIEKESEIGGKLGELDSYEIEGGETKGEILQNLAEFQFS 259
Query: 356 SLIFFALKEGQCSEQSARMTAMDAASKNAGEMIGKLTLTYNRTRQAAITKELTEIVSGAA 535
++F A+ E CSE ARM+AMD++S+NAGEM+ +LTLTYNRTRQA+IT EL EI+SGA+
Sbjct: 260 CVMFNAVLENACSEMGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGAS 319
Query: 536 AV 541
A+
Sbjct: 320 AL 321
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,121,657
Number of Sequences: 369166
Number of extensions: 1283645
Number of successful extensions: 2916
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2900
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4846822695
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)