Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_K09
(847 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O01666|ATPG_DROME ATP synthase gamma chain, mitochondria... 264 3e-70
sp|Q91VR2|ATPG_MOUSE ATP synthase gamma chain, mitochondria... 255 9e-68
sp|P36542|ATPG_HUMAN ATP synthase gamma chain, mitochondria... 251 1e-66
sp|Q5RBS9|ATPG_PONPY ATP synthase gamma chain, mitochondria... 251 2e-66
sp|P05631|ATPG_BOVIN ATP synthase gamma chain, mitochondria... 249 5e-66
sp|P35435|ATPG_RAT ATP synthase gamma chain, mitochondrial 243 6e-64
sp|P49377|ATPG_KLULA ATP synthase gamma chain, mitochondria... 163 6e-40
sp|P38077|ATPG_YEAST ATP synthase gamma chain, mitochondria... 160 5e-39
sp|O74754|ATPG_SCHPO ATP synthase gamma chain, mitochondria... 146 6e-35
sp|P26360|ATPG3_IPOBA ATP synthase gamma chain, mitochondri... 125 1e-28
>sp|O01666|ATPG_DROME ATP synthase gamma chain, mitochondrial precursor
Length = 297
Score = 264 bits (674), Expect = 3e-70
Identities = 137/254 (53%), Positives = 189/254 (74%), Gaps = 2/254 (0%)
Frame = +1
Query: 67 SMNYMQCRTMATLKDIAVRLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARA 246
+M Q R MATLK I++RLKSVKNIQKIT SMKMVSAAKY +AERDL+ ARPYG GA+
Sbjct: 17 TMLAQQQRGMATLKMISIRLKSVKNIQKITQSMKMVSAAKYARAERDLKAARPYGIGAQQ 76
Query: 247 FYQRAEVGKQPDEL--PNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAI 420
F+++ E+ QPDE P +L +A+TSDRGLCGA ++ +A+ IR ++ ++ N ++
Sbjct: 77 FFEKTEI--QPDEKAEPKKLLIAVTSDRGLCGAVHTGVARLIRGELAQDEANT---KVFC 131
Query: 421 IGDKAKGILQRLFPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKS 600
+GDK++ IL RL+ KNIL +++G+ P TF DAS +A ++ ++Y + + +N FKS
Sbjct: 132 VGDKSRAILSRLYGKNILMVANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKS 191
Query: 601 VVSYATTEQPLFSLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKEGQCSEQSA 780
VVSY + P+FS + V K+EK+ +YDS+D +VVKSY E++LASLIF+ +KEG CSEQS+
Sbjct: 192 VVSYQCSTLPIFSGSTVEKSEKLAVYDSLDSDVVKSYLEFSLASLIFYTMKEGACSEQSS 251
Query: 781 RMTAMDAASKNAGE 822
RMTAMD ASKNAGE
Sbjct: 252 RMTAMDNASKNAGE 265
>sp|Q91VR2|ATPG_MOUSE ATP synthase gamma chain, mitochondrial precursor
Length = 298
Score = 255 bits (652), Expect = 9e-68
Identities = 126/249 (50%), Positives = 181/249 (72%)
Frame = +1
Query: 76 YMQCRTMATLKDIAVRLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARAFYQ 255
++Q R MATLKDI RLKS+KNIQKIT SMKMV+AAKY +AER+L+PAR YG G+ A Y+
Sbjct: 19 WIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALYE 78
Query: 256 RAEVGKQPDELPNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKA 435
+A++ K P++ L + ++SDRGLCGA +SS+AK +++++ + I +G+K
Sbjct: 79 KADI-KAPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKNEVAALTAAGKEVMIVGVGEKI 137
Query: 436 KGILQRLFPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKSVVSYA 615
KGIL R L F D+G+KP TF DAS++A ++N +E+++ + FN FKSV+SY
Sbjct: 138 KGILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKSVISYK 197
Query: 616 TTEQPLFSLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKEGQCSEQSARMTAM 795
T E+P+FSLN + AE +++YD +D +V+++Y EY LA+LI+++LKE SEQSARMTAM
Sbjct: 198 TEEKPIFSLNTIATAETMSIYDDIDADVLQNYQEYNLANLIYYSLKESTTSEQSARMTAM 257
Query: 796 DAASKNAGE 822
D ASKNA +
Sbjct: 258 DNASKNASD 266
>sp|P36542|ATPG_HUMAN ATP synthase gamma chain, mitochondrial precursor
Length = 298
Score = 251 bits (642), Expect = 1e-66
Identities = 125/249 (50%), Positives = 180/249 (72%)
Frame = +1
Query: 76 YMQCRTMATLKDIAVRLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARAFYQ 255
++Q R MATLKDI RLKS+KNIQKIT SMKMV+AAKY +AER+L+PAR YG G+ A Y+
Sbjct: 19 WIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARIYGLGSLALYE 78
Query: 256 RAEVGKQPDELPNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKA 435
+A++ K P++ L + ++SDRGLCGA +SSIAK ++ ++ + + IGDK
Sbjct: 79 KADI-KGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKI 137
Query: 436 KGILQRLFPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKSVVSYA 615
+GIL R L F ++G+KP TF DAS++A ++N +E+++ + FN F+SV+SY
Sbjct: 138 RGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYK 197
Query: 616 TTEQPLFSLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKEGQCSEQSARMTAM 795
T E+P+FSLN V A+ +++YD +D +V+++Y EY LA++I+++LKE SEQSARMTAM
Sbjct: 198 TEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAM 257
Query: 796 DAASKNAGE 822
D ASKNA E
Sbjct: 258 DNASKNASE 266
>sp|Q5RBS9|ATPG_PONPY ATP synthase gamma chain, mitochondrial precursor
Length = 297
Score = 251 bits (641), Expect = 2e-66
Identities = 124/249 (49%), Positives = 180/249 (72%)
Frame = +1
Query: 76 YMQCRTMATLKDIAVRLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARAFYQ 255
++Q R MATLKDI RLKS+KNIQKIT SMKMV+AAKY +AER+L+PAR YG G+ A Y+
Sbjct: 19 WIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARIYGLGSLALYE 78
Query: 256 RAEVGKQPDELPNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKA 435
+A++ K P++ L + ++SDRGLCGA +SSIAK ++ ++ + + +GDK
Sbjct: 79 KADI-KGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGVGDKI 137
Query: 436 KGILQRLFPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKSVVSYA 615
+GIL R L F ++G+KP TF DAS++A ++N +E+++ + FN F+SV+SY
Sbjct: 138 RGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYK 197
Query: 616 TTEQPLFSLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKEGQCSEQSARMTAM 795
T E+P+FSLN V A+ +++YD +D +V+++Y EY LA++I+++LKE SEQSARMTAM
Sbjct: 198 TEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAM 257
Query: 796 DAASKNAGE 822
D ASKNA E
Sbjct: 258 DNASKNASE 266
>sp|P05631|ATPG_BOVIN ATP synthase gamma chain, mitochondrial precursor
Length = 298
Score = 249 bits (637), Expect = 5e-66
Identities = 121/249 (48%), Positives = 182/249 (73%)
Frame = +1
Query: 76 YMQCRTMATLKDIAVRLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARAFYQ 255
++Q R MATLKDI RLKS+KNIQKIT SMKMV+AAKY +AER+L+PAR YG G+ A Y+
Sbjct: 19 WIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYE 78
Query: 256 RAEVGKQPDELPNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKA 435
+A++ K P++ L + ++SDRGLCGA +SS+AK ++ + + ++I +GDK
Sbjct: 79 KADI-KTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKI 137
Query: 436 KGILQRLFPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKSVVSYA 615
+ IL R L F ++G++P TF DAS++A ++N +E+++ + FN F+SV+SY
Sbjct: 138 RSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYK 197
Query: 616 TTEQPLFSLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKEGQCSEQSARMTAM 795
T E+P+FSL+ ++ AE +++YD +D +V+++Y EY+LA++I+++LKE SEQSARMTAM
Sbjct: 198 TEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAM 257
Query: 796 DAASKNAGE 822
D ASKNA E
Sbjct: 258 DNASKNASE 266
>sp|P35435|ATPG_RAT ATP synthase gamma chain, mitochondrial
Length = 273
Score = 243 bits (619), Expect = 6e-64
Identities = 122/242 (50%), Positives = 173/242 (71%)
Frame = +1
Query: 97 ATLKDIAVRLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARAFYQRAEVGKQ 276
ATLKDI RLKS+KNIQKIT SMKMV+AAKY +AER+L+PAR YG G+ A Y++AE+ K
Sbjct: 1 ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALYEKAEI-KG 59
Query: 277 PDELPNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKAKGILQRL 456
P++ L + ++SDRGLCGA +SS+AK +++ + + I IG+K K IL R
Sbjct: 60 PEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKNDMAALTAAGKEVMIVGIGEKIKSILYRT 119
Query: 457 FPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKSVVSYATTEQPLF 636
L F D+G+KP TF DAS++A ++N +E+++ + FN FKSV+SY T E+P+F
Sbjct: 120 HSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKSVISYKTEEKPIF 179
Query: 637 SLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKEGQCSEQSARMTAMDAASKNA 816
S + V AE +++YD +D +V+++Y EY LA++I+++LKE SEQSARMTAMD ASKNA
Sbjct: 180 SFSTVVAAENMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNA 239
Query: 817 GE 822
+
Sbjct: 240 SD 241
>sp|P49377|ATPG_KLULA ATP synthase gamma chain, mitochondrial precursor
Length = 289
Score = 163 bits (412), Expect = 6e-40
Identities = 96/247 (38%), Positives = 146/247 (59%), Gaps = 2/247 (0%)
Frame = +1
Query: 88 RTMATLKDIAVRLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARAFYQRAEV 267
R ATL++I RLKS+KNI+KIT +MK+V++ + +KAER A+ Y AFY+ AE
Sbjct: 15 RNYATLREIETRLKSIKNIEKITKTMKIVASTRLSKAERAKNSAKEYALADAAFYKNAET 74
Query: 268 GKQPDELPNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKAKGIL 447
D L +AITSD+GLCG+ +S +AKA+R Q+ N + IGDK KG L
Sbjct: 75 VPLEDAEKKDLIIAITSDKGLCGSIHSQLAKAVRLQLKQT----PNADVVAIGDKVKGQL 130
Query: 448 QRLFPKNILWHFSDIGKKPATFADASLMAEAII-NLEFEYNQAVMFFNTFKSVVSYATTE 624
R N+ + F+ +GK+ TF + SL+A I+ Y + +F+N S +S+ +
Sbjct: 131 LRTNSDNLKFAFNGVGKEAPTFEETSLIANKILEGGASNYKKVSIFWNDPISSLSFEPSN 190
Query: 625 QPLFSLNAVTKAEKINLYD-SVDENVVKSYNEYTLASLIFFALKEGQCSEQSARMTAMDA 801
+P+F+ A+ ++ + ++ D NV + E+TL++ I A+ EG +E SAR AMD
Sbjct: 191 KPVFNAAAIEQSPSFSKFEIDADNNVSQDLFEFTLSNEILAAMAEGYAAEVSARRNAMDN 250
Query: 802 ASKNAGE 822
ASKNAG+
Sbjct: 251 ASKNAGD 257
>sp|P38077|ATPG_YEAST ATP synthase gamma chain, mitochondrial precursor
Length = 311
Score = 160 bits (404), Expect = 5e-39
Identities = 96/253 (37%), Positives = 148/253 (58%), Gaps = 8/253 (3%)
Frame = +1
Query: 88 RTMATLKDIAVRLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARAFYQRAEV 267
RT ATLK++ +RLKS+KNI+KIT +MK+V++ + +KAE+ A+ + FY+ AE
Sbjct: 31 RTYATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDEAEQLFYKNAET 90
Query: 268 GKQPDE-----LPNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDK 432
E P L VAITSD+GLCG+ +S +AKA+R +N N I IGDK
Sbjct: 91 KNLDVEATETGAPKELIVAITSDKGLCGSIHSQLAKAVRRHLNDQ----PNADIVTIGDK 146
Query: 433 AKGILQRLFPKNILWHFSDIGKKPATFADASLMAEAIINL--EFEYNQAVMFFNTFKSVV 606
K L R P NI + IGK TF +++L+A+ ++++ Y + +F+N S +
Sbjct: 147 IKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSL 206
Query: 607 SYATTEQPLFSLNAVTKAEKINLYD-SVDENVVKSYNEYTLASLIFFALKEGQCSEQSAR 783
S+ +E+P+F+ + ++ ++ D NV + EYTLA+ + A+ +G +E SAR
Sbjct: 207 SFEPSEKPIFNAKTIEQSPSFGKFEIDTDANVPRDLFEYTLANQMLTAMAQGYAAEISAR 266
Query: 784 MTAMDAASKNAGE 822
AMD ASKNAG+
Sbjct: 267 RNAMDNASKNAGD 279
>sp|O74754|ATPG_SCHPO ATP synthase gamma chain, mitochondrial precursor
Length = 301
Score = 146 bits (369), Expect = 6e-35
Identities = 84/242 (34%), Positives = 142/242 (58%)
Frame = +1
Query: 97 ATLKDIAVRLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARAFYQRAEVGKQ 276
ATLK+I RLKS+KNI+KIT ++K V+ K +A+R + + Y + ++ E G +
Sbjct: 32 ATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVFK--EAGTK 89
Query: 277 PDELPNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKAKGILQRL 456
E L VA +SD+GLCG +SSI++ IR ++ H+ +N + I+G+K + L R
Sbjct: 90 APEEGKTLMVACSSDKGLCGGIHSSISRLIRREL-HDPKTFENTSLCILGEKVRTQLLRF 148
Query: 457 FPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKSVVSYATTEQPLF 636
P++ F+ IG +F +A ++ I+ +Y++ V+ +N F S VS+ T + L+
Sbjct: 149 CPESFYLTFAHIGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVSFETVMKNLY 208
Query: 637 SLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKEGQCSEQSARMTAMDAASKNA 816
+ A+ ++ ++ Y+ DE V + E+ A+ IF A+ E CSE S+R AM+ ASK+A
Sbjct: 209 TTKAINESPNLSAYEVSDE-VHQPLMEFAFANAIFSAMAEAHCSEMSSRRNAMENASKSA 267
Query: 817 GE 822
G+
Sbjct: 268 GD 269
>sp|P26360|ATPG3_IPOBA ATP synthase gamma chain, mitochondrial precursor
Length = 326
Score = 125 bits (314), Expect = 1e-28
Identities = 88/249 (35%), Positives = 137/249 (55%), Gaps = 15/249 (6%)
Frame = +1
Query: 121 RLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARAFYQ--RAEVGKQPD-ELP 291
R+KSVKNIQKIT +MKMV+A+K LR + +R +Q A +G P ++
Sbjct: 54 RMKSVKNIQKITKAMKMVAASK-------LRAIQTRAENSRGLWQPFTALLGDTPSVDVK 106
Query: 292 NRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKAKGILQRLFPKNI 471
+ + I+SD+GLCG NS+ K R+ N + I+G+KAK L R K+I
Sbjct: 107 KNVIITISSDKGLCGGINSTSVKTSRNIHKLNSGPEKENKYVILGEKAKAQLVRDSKKDI 166
Query: 472 LWHFSDIGKKPATFADASLMAEAII-NLEFEYNQAVMFFNTFKSVVSYATTEQPLFSLNA 648
+++ K P + S++A+ I+ N+EF+ + V FN F+SVVS+ T + S
Sbjct: 167 ELIITELQKNPLNYTQVSVVADDILKNVEFDALRIV--FNKFQSVVSFVPTMSTVLSPEV 224
Query: 649 VTKAE----KINLYDSVD-------ENVVKSYNEYTLASLIFFALKEGQCSEQSARMTAM 795
V + K+ DS + V+++ E+ +S++F A+ E CSEQ ARM+AM
Sbjct: 225 VERESESGGKLGDLDSYEIEGAESKSEVLQNLTEFQFSSVLFNAVLENACSEQGARMSAM 284
Query: 796 DAASKNAGE 822
D++S+NAGE
Sbjct: 285 DSSSRNAGE 293
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,010,687
Number of Sequences: 369166
Number of extensions: 1796054
Number of successful extensions: 4292
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4031
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)