Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_N01
(792 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O01666|ATPG_DROME ATP synthase gamma chain, mitochondria... 256 4e-68
sp|Q91VR2|ATPG_MOUSE ATP synthase gamma chain, mitochondria... 254 2e-67
sp|P36542|ATPG_HUMAN ATP synthase gamma chain, mitochondria... 249 6e-66
sp|Q5RBS9|ATPG_PONPY ATP synthase gamma chain, mitochondria... 249 8e-66
sp|P05631|ATPG_BOVIN ATP synthase gamma chain, mitochondria... 247 2e-65
sp|P35435|ATPG_RAT ATP synthase gamma chain, mitochondrial 241 1e-63
sp|P49377|ATPG_KLULA ATP synthase gamma chain, mitochondria... 157 4e-38
sp|P38077|ATPG_YEAST ATP synthase gamma chain, mitochondria... 154 3e-37
sp|O74754|ATPG_SCHPO ATP synthase gamma chain, mitochondria... 143 6e-34
sp|P26360|ATPG3_IPOBA ATP synthase gamma chain, mitochondri... 121 2e-27
>sp|O01666|ATPG_DROME ATP synthase gamma chain, mitochondrial precursor
Length = 297
Score = 256 bits (655), Expect = 4e-68
Identities = 134/252 (53%), Positives = 186/252 (73%), Gaps = 2/252 (0%)
Frame = +3
Query: 42 SMNYMQCRTMATLKDIAVRLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARA 221
+M Q R MATLK I++RLKSVKNIQKIT SMKMVSAAKY +AERDL+ ARPYG GA+
Sbjct: 17 TMLAQQQRGMATLKMISIRLKSVKNIQKITQSMKMVSAAKYARAERDLKAARPYGIGAQQ 76
Query: 222 FYQRAEVGKQPDEL--PNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAI 395
F+++ E+ QPDE P +L +A+TSDRGLCGA ++ +A+ IR ++ ++ N ++
Sbjct: 77 FFEKTEI--QPDEKAEPKKLLIAVTSDRGLCGAVHTGVARLIRGELAQDEANT---KVFC 131
Query: 396 IGDKAKGILQRLFPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKS 575
+GDK++ IL RL+ KNIL +++G+ P TF DAS +A ++ ++Y + + +N FKS
Sbjct: 132 VGDKSRAILSRLYGKNILMVANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKS 191
Query: 576 VVSYATTEQPLFSLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKERQCSEQSA 755
VVSY + P+FS + V K+EK+ +YDS+D +VVKSY E++LASLIF+ +KE CSEQS+
Sbjct: 192 VVSYQCSTLPIFSGSTVEKSEKLAVYDSLDSDVVKSYLEFSLASLIFYTMKEGACSEQSS 251
Query: 756 RMTAMDAASKNA 791
RMTAMD ASKNA
Sbjct: 252 RMTAMDNASKNA 263
>sp|Q91VR2|ATPG_MOUSE ATP synthase gamma chain, mitochondrial precursor
Length = 298
Score = 254 bits (649), Expect = 2e-67
Identities = 126/247 (51%), Positives = 180/247 (72%)
Frame = +3
Query: 51 YMQCRTMATLKDIAVRLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARAFYQ 230
++Q R MATLKDI RLKS+KNIQKIT SMKMV+AAKY +AER+L+PAR YG G+ A Y+
Sbjct: 19 WIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALYE 78
Query: 231 RAEVGKQPDELPNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKA 410
+A++ K P++ L + ++SDRGLCGA +SS+AK +++++ + I +G+K
Sbjct: 79 KADI-KAPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKNEVAALTAAGKEVMIVGVGEKI 137
Query: 411 KGILQRLFPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKSVVSYA 590
KGIL R L F D+G+KP TF DAS++A ++N +E+++ + FN FKSV+SY
Sbjct: 138 KGILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKSVISYK 197
Query: 591 TTEQPLFSLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKERQCSEQSARMTAM 770
T E+P+FSLN + AE +++YD +D +V+++Y EY LA+LI+++LKE SEQSARMTAM
Sbjct: 198 TEEKPIFSLNTIATAETMSIYDDIDADVLQNYQEYNLANLIYYSLKESTTSEQSARMTAM 257
Query: 771 DAASKNA 791
D ASKNA
Sbjct: 258 DNASKNA 264
>sp|P36542|ATPG_HUMAN ATP synthase gamma chain, mitochondrial precursor
Length = 298
Score = 249 bits (636), Expect = 6e-66
Identities = 124/247 (50%), Positives = 179/247 (72%)
Frame = +3
Query: 51 YMQCRTMATLKDIAVRLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARAFYQ 230
++Q R MATLKDI RLKS+KNIQKIT SMKMV+AAKY +AER+L+PAR YG G+ A Y+
Sbjct: 19 WIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARIYGLGSLALYE 78
Query: 231 RAEVGKQPDELPNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKA 410
+A++ K P++ L + ++SDRGLCGA +SSIAK ++ ++ + + IGDK
Sbjct: 79 KADI-KGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKI 137
Query: 411 KGILQRLFPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKSVVSYA 590
+GIL R L F ++G+KP TF DAS++A ++N +E+++ + FN F+SV+SY
Sbjct: 138 RGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYK 197
Query: 591 TTEQPLFSLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKERQCSEQSARMTAM 770
T E+P+FSLN V A+ +++YD +D +V+++Y EY LA++I+++LKE SEQSARMTAM
Sbjct: 198 TEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAM 257
Query: 771 DAASKNA 791
D ASKNA
Sbjct: 258 DNASKNA 264
>sp|Q5RBS9|ATPG_PONPY ATP synthase gamma chain, mitochondrial precursor
Length = 297
Score = 249 bits (635), Expect = 8e-66
Identities = 123/247 (49%), Positives = 179/247 (72%)
Frame = +3
Query: 51 YMQCRTMATLKDIAVRLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARAFYQ 230
++Q R MATLKDI RLKS+KNIQKIT SMKMV+AAKY +AER+L+PAR YG G+ A Y+
Sbjct: 19 WIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARIYGLGSLALYE 78
Query: 231 RAEVGKQPDELPNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKA 410
+A++ K P++ L + ++SDRGLCGA +SSIAK ++ ++ + + +GDK
Sbjct: 79 KADI-KGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGVGDKI 137
Query: 411 KGILQRLFPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKSVVSYA 590
+GIL R L F ++G+KP TF DAS++A ++N +E+++ + FN F+SV+SY
Sbjct: 138 RGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYK 197
Query: 591 TTEQPLFSLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKERQCSEQSARMTAM 770
T E+P+FSLN V A+ +++YD +D +V+++Y EY LA++I+++LKE SEQSARMTAM
Sbjct: 198 TEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAM 257
Query: 771 DAASKNA 791
D ASKNA
Sbjct: 258 DNASKNA 264
>sp|P05631|ATPG_BOVIN ATP synthase gamma chain, mitochondrial precursor
Length = 298
Score = 247 bits (631), Expect = 2e-65
Identities = 120/247 (48%), Positives = 181/247 (73%)
Frame = +3
Query: 51 YMQCRTMATLKDIAVRLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARAFYQ 230
++Q R MATLKDI RLKS+KNIQKIT SMKMV+AAKY +AER+L+PAR YG G+ A Y+
Sbjct: 19 WIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYE 78
Query: 231 RAEVGKQPDELPNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKA 410
+A++ K P++ L + ++SDRGLCGA +SS+AK ++ + + ++I +GDK
Sbjct: 79 KADI-KTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKI 137
Query: 411 KGILQRLFPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKSVVSYA 590
+ IL R L F ++G++P TF DAS++A ++N +E+++ + FN F+SV+SY
Sbjct: 138 RSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYK 197
Query: 591 TTEQPLFSLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKERQCSEQSARMTAM 770
T E+P+FSL+ ++ AE +++YD +D +V+++Y EY+LA++I+++LKE SEQSARMTAM
Sbjct: 198 TEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAM 257
Query: 771 DAASKNA 791
D ASKNA
Sbjct: 258 DNASKNA 264
>sp|P35435|ATPG_RAT ATP synthase gamma chain, mitochondrial
Length = 273
Score = 241 bits (616), Expect = 1e-63
Identities = 122/240 (50%), Positives = 172/240 (71%)
Frame = +3
Query: 72 ATLKDIAVRLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARAFYQRAEVGKQ 251
ATLKDI RLKS+KNIQKIT SMKMV+AAKY +AER+L+PAR YG G+ A Y++AE+ K
Sbjct: 1 ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALYEKAEI-KG 59
Query: 252 PDELPNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKAKGILQRL 431
P++ L + ++SDRGLCGA +SS+AK +++ + + I IG+K K IL R
Sbjct: 60 PEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKNDMAALTAAGKEVMIVGIGEKIKSILYRT 119
Query: 432 FPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKSVVSYATTEQPLF 611
L F D+G+KP TF DAS++A ++N +E+++ + FN FKSV+SY T E+P+F
Sbjct: 120 HSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKSVISYKTEEKPIF 179
Query: 612 SLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKERQCSEQSARMTAMDAASKNA 791
S + V AE +++YD +D +V+++Y EY LA++I+++LKE SEQSARMTAMD ASKNA
Sbjct: 180 SFSTVVAAENMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNA 239
>sp|P49377|ATPG_KLULA ATP synthase gamma chain, mitochondrial precursor
Length = 289
Score = 157 bits (396), Expect = 4e-38
Identities = 94/245 (38%), Positives = 143/245 (58%), Gaps = 2/245 (0%)
Frame = +3
Query: 63 RTMATLKDIAVRLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARAFYQRAEV 242
R ATL++I RLKS+KNI+KIT +MK+V++ + +KAER A+ Y AFY+ AE
Sbjct: 15 RNYATLREIETRLKSIKNIEKITKTMKIVASTRLSKAERAKNSAKEYALADAAFYKNAET 74
Query: 243 GKQPDELPNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKAKGIL 422
D L +AITSD+GLCG+ +S +AKA+R Q+ N + IGDK KG L
Sbjct: 75 VPLEDAEKKDLIIAITSDKGLCGSIHSQLAKAVRLQLKQT----PNADVVAIGDKVKGQL 130
Query: 423 QRLFPKNILWHFSDIGKKPATFADASLMAEAII-NLEFEYNQAVMFFNTFKSVVSYATTE 599
R N+ + F+ +GK+ TF + SL+A I+ Y + +F+N S +S+ +
Sbjct: 131 LRTNSDNLKFAFNGVGKEAPTFEETSLIANKILEGGASNYKKVSIFWNDPISSLSFEPSN 190
Query: 600 QPLFSLNAVTKAEKINLYD-SVDENVVKSYNEYTLASLIFFALKERQCSEQSARMTAMDA 776
+P+F+ A+ ++ + ++ D NV + E+TL++ I A+ E +E SAR AMD
Sbjct: 191 KPVFNAAAIEQSPSFSKFEIDADNNVSQDLFEFTLSNEILAAMAEGYAAEVSARRNAMDN 250
Query: 777 ASKNA 791
ASKNA
Sbjct: 251 ASKNA 255
>sp|P38077|ATPG_YEAST ATP synthase gamma chain, mitochondrial precursor
Length = 311
Score = 154 bits (388), Expect = 3e-37
Identities = 94/251 (37%), Positives = 145/251 (57%), Gaps = 8/251 (3%)
Frame = +3
Query: 63 RTMATLKDIAVRLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARAFYQRAEV 242
RT ATLK++ +RLKS+KNI+KIT +MK+V++ + +KAE+ A+ + FY+ AE
Sbjct: 31 RTYATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDEAEQLFYKNAET 90
Query: 243 GKQPDE-----LPNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDK 407
E P L VAITSD+GLCG+ +S +AKA+R +N N I IGDK
Sbjct: 91 KNLDVEATETGAPKELIVAITSDKGLCGSIHSQLAKAVRRHLNDQ----PNADIVTIGDK 146
Query: 408 AKGILQRLFPKNILWHFSDIGKKPATFADASLMAEAIINL--EFEYNQAVMFFNTFKSVV 581
K L R P NI + IGK TF +++L+A+ ++++ Y + +F+N S +
Sbjct: 147 IKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSL 206
Query: 582 SYATTEQPLFSLNAVTKAEKINLYD-SVDENVVKSYNEYTLASLIFFALKERQCSEQSAR 758
S+ +E+P+F+ + ++ ++ D NV + EYTLA+ + A+ + +E SAR
Sbjct: 207 SFEPSEKPIFNAKTIEQSPSFGKFEIDTDANVPRDLFEYTLANQMLTAMAQGYAAEISAR 266
Query: 759 MTAMDAASKNA 791
AMD ASKNA
Sbjct: 267 RNAMDNASKNA 277
>sp|O74754|ATPG_SCHPO ATP synthase gamma chain, mitochondrial precursor
Length = 301
Score = 143 bits (360), Expect = 6e-34
Identities = 83/240 (34%), Positives = 140/240 (58%)
Frame = +3
Query: 72 ATLKDIAVRLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARAFYQRAEVGKQ 251
ATLK+I RLKS+KNI+KIT ++K V+ K +A+R + + Y + ++ E G +
Sbjct: 32 ATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVFK--EAGTK 89
Query: 252 PDELPNRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKAKGILQRL 431
E L VA +SD+GLCG +SSI++ IR ++ H+ +N + I+G+K + L R
Sbjct: 90 APEEGKTLMVACSSDKGLCGGIHSSISRLIRREL-HDPKTFENTSLCILGEKVRTQLLRF 148
Query: 432 FPKNILWHFSDIGKKPATFADASLMAEAIINLEFEYNQAVMFFNTFKSVVSYATTEQPLF 611
P++ F+ IG +F +A ++ I+ +Y++ V+ +N F S VS+ T + L+
Sbjct: 149 CPESFYLTFAHIGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVSFETVMKNLY 208
Query: 612 SLNAVTKAEKINLYDSVDENVVKSYNEYTLASLIFFALKERQCSEQSARMTAMDAASKNA 791
+ A+ ++ ++ Y+ DE V + E+ A+ IF A+ E CSE S+R AM+ ASK+A
Sbjct: 209 TTKAINESPNLSAYEVSDE-VHQPLMEFAFANAIFSAMAEAHCSEMSSRRNAMENASKSA 267
>sp|P26360|ATPG3_IPOBA ATP synthase gamma chain, mitochondrial precursor
Length = 326
Score = 121 bits (303), Expect = 2e-27
Identities = 86/247 (34%), Positives = 135/247 (54%), Gaps = 15/247 (6%)
Frame = +3
Query: 96 RLKSVKNIQKITASMKMVSAAKYNKAERDLRPARPYGHGARAFYQ--RAEVGKQPD-ELP 266
R+KSVKNIQKIT +MKMV+A+K LR + +R +Q A +G P ++
Sbjct: 54 RMKSVKNIQKITKAMKMVAASK-------LRAIQTRAENSRGLWQPFTALLGDTPSVDVK 106
Query: 267 NRLYVAITSDRGLCGAANSSIAKAIRDQINHNKDNIDNIRIAIIGDKAKGILQRLFPKNI 446
+ + I+SD+GLCG NS+ K R+ N + I+G+KAK L R K+I
Sbjct: 107 KNVIITISSDKGLCGGINSTSVKTSRNIHKLNSGPEKENKYVILGEKAKAQLVRDSKKDI 166
Query: 447 LWHFSDIGKKPATFADASLMAEAII-NLEFEYNQAVMFFNTFKSVVSYATTEQPLFSLNA 623
+++ K P + S++A+ I+ N+EF+ + V FN F+SVVS+ T + S
Sbjct: 167 ELIITELQKNPLNYTQVSVVADDILKNVEFDALRIV--FNKFQSVVSFVPTMSTVLSPEV 224
Query: 624 VTKAE----KINLYDSVD-------ENVVKSYNEYTLASLIFFALKERQCSEQSARMTAM 770
V + K+ DS + V+++ E+ +S++F A+ E CSEQ ARM+AM
Sbjct: 225 VERESESGGKLGDLDSYEIEGAESKSEVLQNLTEFQFSSVLFNAVLENACSEQGARMSAM 284
Query: 771 DAASKNA 791
D++S+NA
Sbjct: 285 DSSSRNA 291
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,867,419
Number of Sequences: 369166
Number of extensions: 1663943
Number of successful extensions: 4090
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3837
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7425705210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)