Planaria EST Database

DrC_00804

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00804
         (937 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P35603|AP50_CAEEL  Clathrin coat assembly protein AP50 (C...   385   e-107
sp|P84092|AP2M1_RAT  Clathrin coat assembly protein AP50 (Cl...   374   e-103
sp|P54672|AP50_DICDI  Clathrin coat assembly protein AP50 (C...   248   1e-65
sp|Q09718|AP50_SCHPO  Probable clathrin coat assembly protei...   189   1e-47
sp|Q9Y6Q5|AP1M2_HUMAN  Adaptor-related protein complex 1, mu...   164   3e-40
sp|Q9WVP1|AP1M2_MOUSE  Adaptor-related protein complex 1, mu...   164   4e-40
sp|Q99186|APM4_YEAST  Adaptin medium chain homolog APM4           162   1e-39
sp|P35602|AP47_CAEEL  Clathrin coat assembly protein AP47 (C...   162   2e-39
sp|Q9BXS5|AP1M1_HUMAN  Adaptor-related protein complex 1, mu...   161   2e-39
sp|P35585|AP1M1_MOUSE  Adaptor-related protein complex 1, mu...   160   4e-39

>sp|P35603|AP50_CAEEL Clathrin coat assembly protein AP50 (Clathrin coat-associated
           protein AP50) (Plasma membrane adaptor AP-2 50 kDa
           protein) (Clathrin assembly protein complex 2 medium
           chain) (Dumpy protein 23)
          Length = 441

 Score =  385 bits (989), Expect = e-107
 Identities = 185/250 (74%), Positives = 214/250 (85%), Gaps = 1/250 (0%)
 Frame = +1

Query: 1   QILSAHVAGKVIMKSFLSGMPDCKFGFNDKLSLESKNRDDXXXXXXXXXXXXXXXXDDCQ 180
           Q+LSAHVAGKV MKS+LSGMP+CKFG NDK+++E K++                  DDCQ
Sbjct: 194 QVLSAHVAGKVAMKSYLSGMPECKFGINDKITIEGKSKPGSDDPNKASRAAVAI--DDCQ 251

Query: 181 FHQCVKLGRFETEHTISFIPPDGEFELMRYRTTKEINLPFRVIPLVREMGKSRMEVKLVV 360
           FHQCVKL +FETEH ISFIPPDGE+ELMRYRTTK+I LPFRVIPLVRE+ +++MEVK+VV
Sbjct: 252 FHQCVKLTKFETEHAISFIPPDGEYELMRYRTTKDIQLPFRVIPLVREVSRNKMEVKVVV 311

Query: 361 KANFKPNFFAQKVEVRIPTPTNTSGVQVICMKGKAKYKAAENAIVWKIKRMAGMKDCQLS 540
           K+NFKP+  AQK+EVRIPTP NTSGVQ+ICMKGKAKYKA ENAIVWKIKRMAGMK+ Q+S
Sbjct: 312 KSNFKPSLLAQKLEVRIPTPPNTSGVQLICMKGKAKYKAGENAIVWKIKRMAGMKESQIS 371

Query: 541 AEIDLLTVGD-RQKRWTRPPISMNFEVPFAPSGFKVRYLKVFESKLNYSDHEVIKWVRYI 717
           AEIDLL+ G+  +K+W RPP+SMNFEVPFAPSG KVRYLKVFE KLNYSDH+VIKWVRYI
Sbjct: 372 AEIDLLSTGNVEKKKWNRPPVSMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYI 431

Query: 718 GKSGLYETRC 747
           G+SGLYETRC
Sbjct: 432 GRSGLYETRC 441

>sp|P84092|AP2M1_RAT Clathrin coat assembly protein AP50 (Clathrin coat-associated
           protein AP50) (Plasma membrane adaptor AP-2 50 kDa
           protein) (Clathrin assembly protein complex 2 medium
           chain) (AP-2 mu 2 chain)
 sp|P84091|AP2M1_MOUSE Clathrin coat assembly protein AP50 (Clathrin coat-associated
           protein AP50) (Plasma membrane adaptor AP-2 50 kDa
           protein) (Clathrin assembly protein complex 2 medium
           chain) (AP-2 mu 2 chain)
 sp|Q96CW1|AP2M1_HUMAN Clathrin coat assembly protein AP50 (Clathrin coat-associated
           protein AP50) (Plasma membrane adaptor AP-2 50 kDa
           protein) (HA2 50 kDa subunit) (Clathrin assembly protein
           complex 2 medium chain) (AP-2 mu 2 chain)
          Length = 435

 Score =  374 bits (959), Expect = e-103
 Identities = 177/249 (71%), Positives = 212/249 (85%)
 Frame = +1

Query: 1   QILSAHVAGKVIMKSFLSGMPDCKFGFNDKLSLESKNRDDXXXXXXXXXXXXXXXXDDCQ 180
           Q+LSAHV+G+V+MKS+LSGMP+CKFG NDK+ +E + +                  DDC 
Sbjct: 190 QVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAI--DDCT 247

Query: 181 FHQCVKLGRFETEHTISFIPPDGEFELMRYRTTKEINLPFRVIPLVREMGKSRMEVKLVV 360
           FHQCV+L +F++E +ISFIPPDGEFELMRYRTTK+I LPFRVIPLVRE+G++++EVK+V+
Sbjct: 248 FHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVI 307

Query: 361 KANFKPNFFAQKVEVRIPTPTNTSGVQVICMKGKAKYKAAENAIVWKIKRMAGMKDCQLS 540
           K+NFKP+  AQK+EVRIPTP NTSGVQVICMKGKAKYKA+ENAIVWKIKRMAGMK+ Q+S
Sbjct: 308 KSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQIS 367

Query: 541 AEIDLLTVGDRQKRWTRPPISMNFEVPFAPSGFKVRYLKVFESKLNYSDHEVIKWVRYIG 720
           AEI+LL   D+ K+W RPPISMNFEVPFAPSG KVRYLKVFE KLNYSDH+VIKWVRYIG
Sbjct: 368 AEIELLPTNDK-KKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIG 426

Query: 721 KSGLYETRC 747
           +SG+YETRC
Sbjct: 427 RSGIYETRC 435

>sp|P54672|AP50_DICDI Clathrin coat assembly protein AP50 (Clathrin coat-associated
           protein AP50) (Plasma membrane adaptor AP-2 50 kDa
           protein) (Clathrin assembly protein complex 2 medium
           chain)
          Length = 439

 Score =  248 bits (634), Expect = 1e-65
 Identities = 127/250 (50%), Positives = 173/250 (69%), Gaps = 3/250 (1%)
 Frame = +1

Query: 4   ILSAHVAGKVIMKSFLSGMPDCKFGFNDKLSLE-SKNRDDXXXXXXXXXXXXXXXXDDCQ 180
           IL A V+G+V+MK FLSGMP+CKFG NDK+ ++  K+ +                 DD  
Sbjct: 193 ILRADVSGQVMMKCFLSGMPECKFGMNDKVIMDREKSTNGGSAARSGRRRANGIEIDDIT 252

Query: 181 FHQCVKLGRFETEHTISFIPPDGEFELMRYRTTKEINLPFRVIPLVREMGKSRMEVKLVV 360
           FHQCV+LG+F+++ T+SFIPPDGEFELMRYRTT+ INLPF+VIP+VREMG++R+E  + V
Sbjct: 253 FHQCVRLGKFDSDRTVSFIPPDGEFELMRYRTTEHINLPFKVIPIVREMGRTRLECSVTV 312

Query: 361 KANFKPNFFAQKVEVRIPTPTNTSGVQVICMKGKAKYKAAENAIVWKIKRMAGMKDCQLS 540
           K+NF    F   V+V IPTP NT+  +++   GKAKY   ++AI+W+I+R  G  +  L 
Sbjct: 313 KSNFSSKMFGANVKVIIPTPKNTAVCKIVVAAGKAKYMPEQDAIIWRIRRFPGDTEFTLR 372

Query: 541 AEIDLL-TVGDRQKRWTRPPISMNFEVP-FAPSGFKVRYLKVFESKLNYSDHEVIKWVRY 714
           AE++L+ +V   +K W+RPPISM F+V  F  SGF VR+LKV E K NY+    IKWVRY
Sbjct: 373 AEVELMASVNLDKKAWSRPPISMEFQVTMFTASGFSVRFLKVVE-KSNYTP---IKWVRY 428

Query: 715 IGKSGLYETR 744
           + K+G Y+ R
Sbjct: 429 LTKAGTYQNR 438

>sp|Q09718|AP50_SCHPO Probable clathrin coat assembly protein AP50 (Clathrin
           coat-associated protein AP50) (Plasma membrane adaptor
           AP-2 50 kDa protein) (Clathrin assembly protein complex
           2 medium chain)
          Length = 446

 Score =  189 bits (479), Expect = 1e-47
 Identities = 102/253 (40%), Positives = 153/253 (60%), Gaps = 6/253 (2%)
 Frame = +1

Query: 4   ILSAHVAGKVIMKSFLSGMPDCKFGFNDKLSL-----ESKNRDDXXXXXXXXXXXXXXXX 168
           +L + V+G V M++ LSGMP+C+FG NDKL       ESK++ +                
Sbjct: 198 VLRSDVSGVVKMRAMLSGMPECQFGLNDKLDFKLKQSESKSKSNNSRNPSSVNGGFVIL- 256

Query: 169 DDCQFHQCVKLGRFETEHTISFIPPDGEFELMRYRTTKEINLPFRVIPLVREMGKSRMEV 348
           +DCQFHQCV+L  FE EH I+FIPPDGE ELM YR+ + IN+PFR++P+V ++ K ++  
Sbjct: 257 EDCQFHQCVRLPEFENEHRITFIPPDGEVELMSYRSHENINIPFRIVPIVEQLSKQKIIY 316

Query: 349 KLVVKANFKPNFFAQKVEVRIPTPTNTSGVQVICMKGKAKYKAAENAIVWKIKRMAGMKD 528
           ++ ++A++ P+  +  +  RIP PTN         +GKA Y+ +EN I WKI R  G  +
Sbjct: 317 RISIRADY-PHKLSSSLNFRIPVPTNVVKANPRVNRGKAGYEPSENIINWKIPRFLGETE 375

Query: 529 CQLSAEIDLLTVGDRQKRWTRPPISMNFEV-PFAPSGFKVRYLKVFESKLNYSDHEVIKW 705
               AE++L      Q+ W +PPIS++F +  F  SG  V+YL+V  S+ + S ++ IKW
Sbjct: 376 LIFYAEVELSNT-TNQQIWAKPPISLDFNILMFTSSGLHVQYLRV--SEPSNSKYKSIKW 432

Query: 706 VRYIGKSGLYETR 744
           VRY  ++G  E R
Sbjct: 433 VRYSTRAGTCEIR 445

>sp|Q9Y6Q5|AP1M2_HUMAN Adaptor-related protein complex 1, mu 2 subunit (Mu-adaptin 2)
           (Adaptor protein complex AP-1 mu-2 subunit) (Golgi
           adaptor HA1/AP1 adaptin mu-2 subunit) (Clathrin assembly
           protein assembly protein complex 1 medium chain 2)
           (AP-mu chain family member mu1B)
          Length = 423

 Score =  164 bits (416), Expect = 3e-40
 Identities = 87/248 (35%), Positives = 136/248 (54%), Gaps = 1/248 (0%)
 Frame = +1

Query: 4   ILSAHVAGKVIMKSFLSGMPDCKFGFNDKLSLESKNRDDXXXXXXXXXXXXXXXXDDCQF 183
           +L + + G + +K FLSGMP+ + G ND++  E   R                  +D +F
Sbjct: 189 VLLSEIVGTIKLKVFLSGMPELRLGLNDRVLFELTGRSKNKSVEL----------EDVKF 238

Query: 184 HQCVKLGRFETEHTISFIPPDGEFELMRYRTTKEINLPFRVIPLVREMGKSRMEVKLVVK 363
           HQCV+L RF+ + TISFIPPDG+FELM YR + ++     +  ++ +   SR+E+ +  K
Sbjct: 239 HQCVRLSRFDNDRTISFIPPDGDFELMSYRLSTQVKPLIWIESVIEKFSHSRVEIMVKAK 298

Query: 364 ANFKPNFFAQKVEVRIPTPTNTSGVQVICMKGKAKYKAAENAIVWKIKRMAGMKDCQLSA 543
             FK    A  VE+ +P P++    +     G AKY    N ++W IK   G K+  + A
Sbjct: 299 GQFKKQSVANGVEISVPVPSDADSPRFKTSVGSAKYVPERNVVIWSIKSFPGGKEYLMRA 358

Query: 544 EIDLLTVGDRQKRWTRPPISMNFEVP-FAPSGFKVRYLKVFESKLNYSDHEVIKWVRYIG 720
              L +V ++++   RPPI + FE+P F  SG +VRY+K+ E     S ++ + WVRYI 
Sbjct: 359 HFGLPSV-EKEEVEGRPPIGVKFEIPYFTVSGIQVRYMKIIEK----SGYQALPWVRYIT 413

Query: 721 KSGLYETR 744
           +SG Y+ R
Sbjct: 414 QSGDYQLR 421

>sp|Q9WVP1|AP1M2_MOUSE Adaptor-related protein complex 1, mu 2 subunit (Mu-adaptin 2)
           (Adaptor protein complex AP-1 mu-2 subunit) (Golgi
           adaptor HA1/AP1 adaptin mu-2 subunit) (Clathrin assembly
           protein assembly protein complex 1 medium chain 2)
           (AP-mu chain family member mu1B)
          Length = 423

 Score =  164 bits (414), Expect = 4e-40
 Identities = 87/248 (35%), Positives = 136/248 (54%), Gaps = 1/248 (0%)
 Frame = +1

Query: 4   ILSAHVAGKVIMKSFLSGMPDCKFGFNDKLSLESKNRDDXXXXXXXXXXXXXXXXDDCQF 183
           +L + + G + +K FLSGMP+ + G ND++  E   R                  +D +F
Sbjct: 189 VLLSEIVGTIKLKVFLSGMPELRLGLNDRVLFELTGRSKNKSVEL----------EDVKF 238

Query: 184 HQCVKLGRFETEHTISFIPPDGEFELMRYRTTKEINLPFRVIPLVREMGKSRMEVKLVVK 363
           HQCV+L RF+ + TISFIPPDG+FELM YR + ++     +  ++ +   SR+E+ +  K
Sbjct: 239 HQCVRLSRFDNDRTISFIPPDGDFELMSYRLSTQVKPLIWIESVIEKFSHSRVEIMVKAK 298

Query: 364 ANFKPNFFAQKVEVRIPTPTNTSGVQVICMKGKAKYKAAENAIVWKIKRMAGMKDCQLSA 543
             FK    A  VE+ +P P++    +     G AKY   +N ++W IK   G K+  + A
Sbjct: 299 GQFKKQSVANGVEISVPVPSDADSPRFKTSVGSAKYVPEKNVVIWSIKSFPGGKEYLMRA 358

Query: 544 EIDLLTVGDRQKRWTRPPISMNFEVP-FAPSGFKVRYLKVFESKLNYSDHEVIKWVRYIG 720
              L +V + ++   RPPI + FE+P F  SG +VRY+K+ E     S ++ + WVRYI 
Sbjct: 359 HFGLPSV-ETEEVEGRPPIGVKFEIPYFTVSGIQVRYMKIIEK----SGYQALPWVRYIT 413

Query: 721 KSGLYETR 744
           +SG Y+ R
Sbjct: 414 QSGDYQLR 421

>sp|Q99186|APM4_YEAST Adaptin medium chain homolog APM4
          Length = 491

 Score =  162 bits (410), Expect = 1e-39
 Identities = 90/265 (33%), Positives = 139/265 (52%), Gaps = 18/265 (6%)
 Frame = +1

Query: 4    ILSAHVAGKVIMKSFLSGMPDCKFGFNDKLSLESKNR-------------DDXXXXXXXX 144
            IL ++V G + + + LSG P C+FG ND L ++S++              D         
Sbjct: 230  ILKSYVDGTIDITTHLSGTPICRFGLNDSLGMQSEDEKKWLAQQQRHSGSDFGNKNFIPK 289

Query: 145  XXXXXXXXDDCQFHQCVKLGRFETEHTISFIPPDGEFELMRYRTTKEINLPFRVIPLVRE 324
                    +DC+FH+CV L +F   H I F+PPDG  ELM+Y     INLPF+V P+V  
Sbjct: 290  AAAGSVLLEDCKFHECVSLDKFNRNHIIEFVPPDGSMELMKYHVRDNINLPFKVTPIVTH 349

Query: 325  MGK-SRMEVKLVVKANFKPNFFAQKVEVRIPTPTNTSGVQVICMKGKAKYKAAENAIVWK 501
              + + ++ ++ +K+ F     A+ V + IP P +T   ++    G  K+   ENA++W+
Sbjct: 350  STRDNEIDYRITLKSLFPGKLSAKDVVLHIPVPPSTVDCKISVSNGHCKFVPEENAMIWR 409

Query: 502  IKRMAGMKDCQLSAEIDLLTVGDRQ---KRWTRPPISMNFEV-PFAPSGFKVRYLKVFES 669
              +  G+ +  LSA + + T    Q   ++WTRPPIS+ FEV  F+ SG  VRY  +   
Sbjct: 410  FNKYNGLTENTLSA-VTVSTSDTTQLNLQQWTRPPISLEFEVMMFSNSGLVVRYFTISGK 468

Query: 670  KLNYSDHEVIKWVRYIGKSGLYETR 744
                S H  +KW++YI K+G YE R
Sbjct: 469  D---SKHRAVKWIKYISKAGSYEVR 490

>sp|P35602|AP47_CAEEL Clathrin coat assembly protein AP47 (Clathrin coat-associated
           protein AP47) (Golgi adaptor AP-1 47 kDa protein) (HA1
           47 kDa subunit) (Clathrin assembly protein assembly
           protein complex 1 medium chain) (Uncoordinated protein
           101)
          Length = 422

 Score =  162 bits (409), Expect = 2e-39
 Identities = 91/248 (36%), Positives = 131/248 (52%), Gaps = 1/248 (0%)
 Frame = +1

Query: 4   ILSAHVAGKVIMKSFLSGMPDCKFGFNDKLSLESKNRDDXXXXXXXXXXXXXXXXDDCQF 183
           +L + + G V M+ +L+GMP+ + G NDK+  E   R                  +D +F
Sbjct: 188 VLQSEIVGSVKMRVYLTGMPELRLGLNDKVLFEGSGRGKSKSVEL----------EDVKF 237

Query: 184 HQCVKLGRFETEHTISFIPPDGEFELMRYRTTKEINLPFRVIPLVREMGKSRMEVKLVVK 363
           HQCV+L RF+T+ TISFIPPDG FELM YR T  +     +   +     SR+   +  K
Sbjct: 238 HQCVRLSRFDTDRTISFIPPDGAFELMSYRLTTVVKPLIWIETSIERHSHSRVSFIIKAK 297

Query: 364 ANFKPNFFAQKVEVRIPTPTNTSGVQVICMKGKAKYKAAENAIVWKIKRMAGMKDCQLSA 543
           + FK    A  VE+ IP P++    +     G  KY   ++A VW IK   G K+  L+A
Sbjct: 298 SQFKRRSTANNVEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTIKNFPGGKEYLLTA 357

Query: 544 EIDLLTVGDRQKRWTRPPISMNFEVP-FAPSGFKVRYLKVFESKLNYSDHEVIKWVRYIG 720
            + L +V   +    RPPI + FE+P F  SG +VRYLK+ E     S ++ + WVRYI 
Sbjct: 358 HLSLPSVMSEESE-GRPPIKVKFEIPYFTTSGIQVRYLKIIEK----SGYQALPWVRYIT 412

Query: 721 KSGLYETR 744
           ++G YE R
Sbjct: 413 QNGEYEMR 420

>sp|Q9BXS5|AP1M1_HUMAN Adaptor-related protein complex 1, mu 1 subunit (Mu-adaptin 1)
           (Adaptor protein complex AP-1 mu-1 subunit) (Golgi
           adaptor HA1/AP1 adaptin mu-1 subunit) (Clathrin assembly
           protein assembly protein complex 1 medium chain 1)
           (Clathrin coat assembly protein AP47) (Clathrin
           coat-associated protein AP47) (AP-mu chain family member
           mu1A)
          Length = 423

 Score =  161 bits (408), Expect = 2e-39
 Identities = 89/248 (35%), Positives = 133/248 (53%), Gaps = 1/248 (0%)
 Frame = +1

Query: 4   ILSAHVAGKVIMKSFLSGMPDCKFGFNDKLSLESKNRDDXXXXXXXXXXXXXXXXDDCQF 183
           +L + + G + M+ FLSGMP+ + G NDK+  ++  R                  +D +F
Sbjct: 189 VLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVEL----------EDVKF 238

Query: 184 HQCVKLGRFETEHTISFIPPDGEFELMRYRTTKEINLPFRVIPLVREMGKSRMEVKLVVK 363
           HQCV+L RFE + TISFIPPDGEFELM YR    +     +  ++ +   SR+E  +  K
Sbjct: 239 HQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMIKAK 298

Query: 364 ANFKPNFFAQKVEVRIPTPTNTSGVQVICMKGKAKYKAAENAIVWKIKRMAGMKDCQLSA 543
           + FK    A  VE+ IP P +    +     G  K+    + IVW IK   G K+  + A
Sbjct: 299 SQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSIKSFPGGKEYLMRA 358

Query: 544 EIDLLTVGDRQKRWTRPPISMNFEVP-FAPSGFKVRYLKVFESKLNYSDHEVIKWVRYIG 720
              L +V + + +  +PPIS+ FE+P F  SG +VRYLK+ E     S ++ + WVRYI 
Sbjct: 359 HFGLPSV-EAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEK----SGYQALPWVRYIT 413

Query: 721 KSGLYETR 744
           ++G Y+ R
Sbjct: 414 QNGDYQLR 421

>sp|P35585|AP1M1_MOUSE Adaptor-related protein complex 1, mu 1 subunit (Mu-adaptin 1)
           (Adaptor protein complex AP-1 mu-1 subunit) (Golgi
           adaptor HA1/AP1 adaptin mu-1 subunit) (Clathrin assembly
           protein assembly protein complex 1 medium chain 1)
           (Clathrin coat assembly protein AP47) (Clathrin
           coat-associated protein AP47) (AP-mu chain family member
           mu1A)
          Length = 423

 Score =  160 bits (406), Expect = 4e-39
 Identities = 88/248 (35%), Positives = 133/248 (53%), Gaps = 1/248 (0%)
 Frame = +1

Query: 4   ILSAHVAGKVIMKSFLSGMPDCKFGFNDKLSLESKNRDDXXXXXXXXXXXXXXXXDDCQF 183
           +L + + G + M+ FLSGMP+ + G NDK+  ++  R                  +D +F
Sbjct: 189 VLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVEL----------EDVKF 238

Query: 184 HQCVKLGRFETEHTISFIPPDGEFELMRYRTTKEINLPFRVIPLVREMGKSRMEVKLVVK 363
           HQCV+L RFE + TISFIPPDGEFELM YR    +     +  ++ +   SR+E  +  K
Sbjct: 239 HQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAK 298

Query: 364 ANFKPNFFAQKVEVRIPTPTNTSGVQVICMKGKAKYKAAENAIVWKIKRMAGMKDCQLSA 543
           + FK    A  VE+ IP P +    +     G  K+    + IVW +K   G K+  + A
Sbjct: 299 SQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRA 358

Query: 544 EIDLLTVGDRQKRWTRPPISMNFEVP-FAPSGFKVRYLKVFESKLNYSDHEVIKWVRYIG 720
              L +V + + +  +PPIS+ FE+P F  SG +VRYLK+ E     S ++ + WVRYI 
Sbjct: 359 HFGLPSV-EAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEK----SGYQALPWVRYIT 413

Query: 721 KSGLYETR 744
           ++G Y+ R
Sbjct: 414 QNGDYQLR 421

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,346,810
Number of Sequences: 369166
Number of extensions: 1993687
Number of successful extensions: 5161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5107
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9654860130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00804

  1. Dr_sW_020_K17
  2. Dr_sW_012_L11
  3. Dr_sW_020_D10
  4. Dr_sW_022_M06