Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_K17
(890 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35603|AP50_CAEEL Clathrin coat assembly protein AP50 (C... 385 e-107
sp|P84092|AP2M1_RAT Clathrin coat assembly protein AP50 (Cl... 374 e-103
sp|P54672|AP50_DICDI Clathrin coat assembly protein AP50 (C... 248 1e-65
sp|Q09718|AP50_SCHPO Probable clathrin coat assembly protei... 189 1e-47
sp|Q9Y6Q5|AP1M2_HUMAN Adaptor-related protein complex 1, mu... 164 2e-40
sp|Q9WVP1|AP1M2_MOUSE Adaptor-related protein complex 1, mu... 164 4e-40
sp|Q99186|APM4_YEAST Adaptin medium chain homolog APM4 162 1e-39
sp|P35602|AP47_CAEEL Clathrin coat assembly protein AP47 (C... 162 2e-39
sp|Q9BXS5|AP1M1_HUMAN Adaptor-related protein complex 1, mu... 161 2e-39
sp|P35585|AP1M1_MOUSE Adaptor-related protein complex 1, mu... 160 3e-39
>sp|P35603|AP50_CAEEL Clathrin coat assembly protein AP50 (Clathrin coat-associated
protein AP50) (Plasma membrane adaptor AP-2 50 kDa
protein) (Clathrin assembly protein complex 2 medium
chain) (Dumpy protein 23)
Length = 441
Score = 385 bits (989), Expect = e-107
Identities = 185/250 (74%), Positives = 214/250 (85%), Gaps = 1/250 (0%)
Frame = +1
Query: 1 QILSAHVAGKVIMKSFLSGMPDCKFGFNDKLSLESKNRDDXXXXXXXXXXXXXXXXDDCQ 180
Q+LSAHVAGKV MKS+LSGMP+CKFG NDK+++E K++ DDCQ
Sbjct: 194 QVLSAHVAGKVAMKSYLSGMPECKFGINDKITIEGKSKPGSDDPNKASRAAVAI--DDCQ 251
Query: 181 FHQCVKLGRFETEHTISFIPPDGEFELMRYRTTKEINLPFRVIPLVREMGKSRMEVKLVV 360
FHQCVKL +FETEH ISFIPPDGE+ELMRYRTTK+I LPFRVIPLVRE+ +++MEVK+VV
Sbjct: 252 FHQCVKLTKFETEHAISFIPPDGEYELMRYRTTKDIQLPFRVIPLVREVSRNKMEVKVVV 311
Query: 361 KANFKPNFFAQKVEVRIPTPTNTSGVQVICMKGKAKYKAAENAIVWKIKRMAGMKDCQLS 540
K+NFKP+ AQK+EVRIPTP NTSGVQ+ICMKGKAKYKA ENAIVWKIKRMAGMK+ Q+S
Sbjct: 312 KSNFKPSLLAQKLEVRIPTPPNTSGVQLICMKGKAKYKAGENAIVWKIKRMAGMKESQIS 371
Query: 541 AEIDLLTVGD-RQKRWTRPPISMNFEVPFAPSGFKVRYLKVFESKLNYSDHEVIKWVRYI 717
AEIDLL+ G+ +K+W RPP+SMNFEVPFAPSG KVRYLKVFE KLNYSDH+VIKWVRYI
Sbjct: 372 AEIDLLSTGNVEKKKWNRPPVSMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYI 431
Query: 718 GKSGLYETRC 747
G+SGLYETRC
Sbjct: 432 GRSGLYETRC 441
>sp|P84092|AP2M1_RAT Clathrin coat assembly protein AP50 (Clathrin coat-associated
protein AP50) (Plasma membrane adaptor AP-2 50 kDa
protein) (Clathrin assembly protein complex 2 medium
chain) (AP-2 mu 2 chain)
sp|P84091|AP2M1_MOUSE Clathrin coat assembly protein AP50 (Clathrin coat-associated
protein AP50) (Plasma membrane adaptor AP-2 50 kDa
protein) (Clathrin assembly protein complex 2 medium
chain) (AP-2 mu 2 chain)
sp|Q96CW1|AP2M1_HUMAN Clathrin coat assembly protein AP50 (Clathrin coat-associated
protein AP50) (Plasma membrane adaptor AP-2 50 kDa
protein) (HA2 50 kDa subunit) (Clathrin assembly protein
complex 2 medium chain) (AP-2 mu 2 chain)
Length = 435
Score = 374 bits (959), Expect = e-103
Identities = 177/249 (71%), Positives = 212/249 (85%)
Frame = +1
Query: 1 QILSAHVAGKVIMKSFLSGMPDCKFGFNDKLSLESKNRDDXXXXXXXXXXXXXXXXDDCQ 180
Q+LSAHV+G+V+MKS+LSGMP+CKFG NDK+ +E + + DDC
Sbjct: 190 QVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAI--DDCT 247
Query: 181 FHQCVKLGRFETEHTISFIPPDGEFELMRYRTTKEINLPFRVIPLVREMGKSRMEVKLVV 360
FHQCV+L +F++E +ISFIPPDGEFELMRYRTTK+I LPFRVIPLVRE+G++++EVK+V+
Sbjct: 248 FHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVI 307
Query: 361 KANFKPNFFAQKVEVRIPTPTNTSGVQVICMKGKAKYKAAENAIVWKIKRMAGMKDCQLS 540
K+NFKP+ AQK+EVRIPTP NTSGVQVICMKGKAKYKA+ENAIVWKIKRMAGMK+ Q+S
Sbjct: 308 KSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQIS 367
Query: 541 AEIDLLTVGDRQKRWTRPPISMNFEVPFAPSGFKVRYLKVFESKLNYSDHEVIKWVRYIG 720
AEI+LL D+ K+W RPPISMNFEVPFAPSG KVRYLKVFE KLNYSDH+VIKWVRYIG
Sbjct: 368 AEIELLPTNDK-KKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIG 426
Query: 721 KSGLYETRC 747
+SG+YETRC
Sbjct: 427 RSGIYETRC 435
>sp|P54672|AP50_DICDI Clathrin coat assembly protein AP50 (Clathrin coat-associated
protein AP50) (Plasma membrane adaptor AP-2 50 kDa
protein) (Clathrin assembly protein complex 2 medium
chain)
Length = 439
Score = 248 bits (634), Expect = 1e-65
Identities = 127/250 (50%), Positives = 173/250 (69%), Gaps = 3/250 (1%)
Frame = +1
Query: 4 ILSAHVAGKVIMKSFLSGMPDCKFGFNDKLSLE-SKNRDDXXXXXXXXXXXXXXXXDDCQ 180
IL A V+G+V+MK FLSGMP+CKFG NDK+ ++ K+ + DD
Sbjct: 193 ILRADVSGQVMMKCFLSGMPECKFGMNDKVIMDREKSTNGGSAARSGRRRANGIEIDDIT 252
Query: 181 FHQCVKLGRFETEHTISFIPPDGEFELMRYRTTKEINLPFRVIPLVREMGKSRMEVKLVV 360
FHQCV+LG+F+++ T+SFIPPDGEFELMRYRTT+ INLPF+VIP+VREMG++R+E + V
Sbjct: 253 FHQCVRLGKFDSDRTVSFIPPDGEFELMRYRTTEHINLPFKVIPIVREMGRTRLECSVTV 312
Query: 361 KANFKPNFFAQKVEVRIPTPTNTSGVQVICMKGKAKYKAAENAIVWKIKRMAGMKDCQLS 540
K+NF F V+V IPTP NT+ +++ GKAKY ++AI+W+I+R G + L
Sbjct: 313 KSNFSSKMFGANVKVIIPTPKNTAVCKIVVAAGKAKYMPEQDAIIWRIRRFPGDTEFTLR 372
Query: 541 AEIDLL-TVGDRQKRWTRPPISMNFEVP-FAPSGFKVRYLKVFESKLNYSDHEVIKWVRY 714
AE++L+ +V +K W+RPPISM F+V F SGF VR+LKV E K NY+ IKWVRY
Sbjct: 373 AEVELMASVNLDKKAWSRPPISMEFQVTMFTASGFSVRFLKVVE-KSNYTP---IKWVRY 428
Query: 715 IGKSGLYETR 744
+ K+G Y+ R
Sbjct: 429 LTKAGTYQNR 438
>sp|Q09718|AP50_SCHPO Probable clathrin coat assembly protein AP50 (Clathrin
coat-associated protein AP50) (Plasma membrane adaptor
AP-2 50 kDa protein) (Clathrin assembly protein complex
2 medium chain)
Length = 446
Score = 189 bits (479), Expect = 1e-47
Identities = 102/253 (40%), Positives = 153/253 (60%), Gaps = 6/253 (2%)
Frame = +1
Query: 4 ILSAHVAGKVIMKSFLSGMPDCKFGFNDKLSL-----ESKNRDDXXXXXXXXXXXXXXXX 168
+L + V+G V M++ LSGMP+C+FG NDKL ESK++ +
Sbjct: 198 VLRSDVSGVVKMRAMLSGMPECQFGLNDKLDFKLKQSESKSKSNNSRNPSSVNGGFVIL- 256
Query: 169 DDCQFHQCVKLGRFETEHTISFIPPDGEFELMRYRTTKEINLPFRVIPLVREMGKSRMEV 348
+DCQFHQCV+L FE EH I+FIPPDGE ELM YR+ + IN+PFR++P+V ++ K ++
Sbjct: 257 EDCQFHQCVRLPEFENEHRITFIPPDGEVELMSYRSHENINIPFRIVPIVEQLSKQKIIY 316
Query: 349 KLVVKANFKPNFFAQKVEVRIPTPTNTSGVQVICMKGKAKYKAAENAIVWKIKRMAGMKD 528
++ ++A++ P+ + + RIP PTN +GKA Y+ +EN I WKI R G +
Sbjct: 317 RISIRADY-PHKLSSSLNFRIPVPTNVVKANPRVNRGKAGYEPSENIINWKIPRFLGETE 375
Query: 529 CQLSAEIDLLTVGDRQKRWTRPPISMNFEV-PFAPSGFKVRYLKVFESKLNYSDHEVIKW 705
AE++L Q+ W +PPIS++F + F SG V+YL+V S+ + S ++ IKW
Sbjct: 376 LIFYAEVELSNT-TNQQIWAKPPISLDFNILMFTSSGLHVQYLRV--SEPSNSKYKSIKW 432
Query: 706 VRYIGKSGLYETR 744
VRY ++G E R
Sbjct: 433 VRYSTRAGTCEIR 445
>sp|Q9Y6Q5|AP1M2_HUMAN Adaptor-related protein complex 1, mu 2 subunit (Mu-adaptin 2)
(Adaptor protein complex AP-1 mu-2 subunit) (Golgi
adaptor HA1/AP1 adaptin mu-2 subunit) (Clathrin assembly
protein assembly protein complex 1 medium chain 2)
(AP-mu chain family member mu1B)
Length = 423
Score = 164 bits (416), Expect = 2e-40
Identities = 87/248 (35%), Positives = 136/248 (54%), Gaps = 1/248 (0%)
Frame = +1
Query: 4 ILSAHVAGKVIMKSFLSGMPDCKFGFNDKLSLESKNRDDXXXXXXXXXXXXXXXXDDCQF 183
+L + + G + +K FLSGMP+ + G ND++ E R +D +F
Sbjct: 189 VLLSEIVGTIKLKVFLSGMPELRLGLNDRVLFELTGRSKNKSVEL----------EDVKF 238
Query: 184 HQCVKLGRFETEHTISFIPPDGEFELMRYRTTKEINLPFRVIPLVREMGKSRMEVKLVVK 363
HQCV+L RF+ + TISFIPPDG+FELM YR + ++ + ++ + SR+E+ + K
Sbjct: 239 HQCVRLSRFDNDRTISFIPPDGDFELMSYRLSTQVKPLIWIESVIEKFSHSRVEIMVKAK 298
Query: 364 ANFKPNFFAQKVEVRIPTPTNTSGVQVICMKGKAKYKAAENAIVWKIKRMAGMKDCQLSA 543
FK A VE+ +P P++ + G AKY N ++W IK G K+ + A
Sbjct: 299 GQFKKQSVANGVEISVPVPSDADSPRFKTSVGSAKYVPERNVVIWSIKSFPGGKEYLMRA 358
Query: 544 EIDLLTVGDRQKRWTRPPISMNFEVP-FAPSGFKVRYLKVFESKLNYSDHEVIKWVRYIG 720
L +V ++++ RPPI + FE+P F SG +VRY+K+ E S ++ + WVRYI
Sbjct: 359 HFGLPSV-EKEEVEGRPPIGVKFEIPYFTVSGIQVRYMKIIEK----SGYQALPWVRYIT 413
Query: 721 KSGLYETR 744
+SG Y+ R
Sbjct: 414 QSGDYQLR 421
>sp|Q9WVP1|AP1M2_MOUSE Adaptor-related protein complex 1, mu 2 subunit (Mu-adaptin 2)
(Adaptor protein complex AP-1 mu-2 subunit) (Golgi
adaptor HA1/AP1 adaptin mu-2 subunit) (Clathrin assembly
protein assembly protein complex 1 medium chain 2)
(AP-mu chain family member mu1B)
Length = 423
Score = 164 bits (414), Expect = 4e-40
Identities = 87/248 (35%), Positives = 136/248 (54%), Gaps = 1/248 (0%)
Frame = +1
Query: 4 ILSAHVAGKVIMKSFLSGMPDCKFGFNDKLSLESKNRDDXXXXXXXXXXXXXXXXDDCQF 183
+L + + G + +K FLSGMP+ + G ND++ E R +D +F
Sbjct: 189 VLLSEIVGTIKLKVFLSGMPELRLGLNDRVLFELTGRSKNKSVEL----------EDVKF 238
Query: 184 HQCVKLGRFETEHTISFIPPDGEFELMRYRTTKEINLPFRVIPLVREMGKSRMEVKLVVK 363
HQCV+L RF+ + TISFIPPDG+FELM YR + ++ + ++ + SR+E+ + K
Sbjct: 239 HQCVRLSRFDNDRTISFIPPDGDFELMSYRLSTQVKPLIWIESVIEKFSHSRVEIMVKAK 298
Query: 364 ANFKPNFFAQKVEVRIPTPTNTSGVQVICMKGKAKYKAAENAIVWKIKRMAGMKDCQLSA 543
FK A VE+ +P P++ + G AKY +N ++W IK G K+ + A
Sbjct: 299 GQFKKQSVANGVEISVPVPSDADSPRFKTSVGSAKYVPEKNVVIWSIKSFPGGKEYLMRA 358
Query: 544 EIDLLTVGDRQKRWTRPPISMNFEVP-FAPSGFKVRYLKVFESKLNYSDHEVIKWVRYIG 720
L +V + ++ RPPI + FE+P F SG +VRY+K+ E S ++ + WVRYI
Sbjct: 359 HFGLPSV-ETEEVEGRPPIGVKFEIPYFTVSGIQVRYMKIIEK----SGYQALPWVRYIT 413
Query: 721 KSGLYETR 744
+SG Y+ R
Sbjct: 414 QSGDYQLR 421
>sp|Q99186|APM4_YEAST Adaptin medium chain homolog APM4
Length = 491
Score = 162 bits (410), Expect = 1e-39
Identities = 90/265 (33%), Positives = 139/265 (52%), Gaps = 18/265 (6%)
Frame = +1
Query: 4 ILSAHVAGKVIMKSFLSGMPDCKFGFNDKLSLESKNR-------------DDXXXXXXXX 144
IL ++V G + + + LSG P C+FG ND L ++S++ D
Sbjct: 230 ILKSYVDGTIDITTHLSGTPICRFGLNDSLGMQSEDEKKWLAQQQRHSGSDFGNKNFIPK 289
Query: 145 XXXXXXXXDDCQFHQCVKLGRFETEHTISFIPPDGEFELMRYRTTKEINLPFRVIPLVRE 324
+DC+FH+CV L +F H I F+PPDG ELM+Y INLPF+V P+V
Sbjct: 290 AAAGSVLLEDCKFHECVSLDKFNRNHIIEFVPPDGSMELMKYHVRDNINLPFKVTPIVTH 349
Query: 325 MGK-SRMEVKLVVKANFKPNFFAQKVEVRIPTPTNTSGVQVICMKGKAKYKAAENAIVWK 501
+ + ++ ++ +K+ F A+ V + IP P +T ++ G K+ ENA++W+
Sbjct: 350 STRDNEIDYRITLKSLFPGKLSAKDVVLHIPVPPSTVDCKISVSNGHCKFVPEENAMIWR 409
Query: 502 IKRMAGMKDCQLSAEIDLLTVGDRQ---KRWTRPPISMNFEV-PFAPSGFKVRYLKVFES 669
+ G+ + LSA + + T Q ++WTRPPIS+ FEV F+ SG VRY +
Sbjct: 410 FNKYNGLTENTLSA-VTVSTSDTTQLNLQQWTRPPISLEFEVMMFSNSGLVVRYFTISGK 468
Query: 670 KLNYSDHEVIKWVRYIGKSGLYETR 744
S H +KW++YI K+G YE R
Sbjct: 469 D---SKHRAVKWIKYISKAGSYEVR 490
>sp|P35602|AP47_CAEEL Clathrin coat assembly protein AP47 (Clathrin coat-associated
protein AP47) (Golgi adaptor AP-1 47 kDa protein) (HA1
47 kDa subunit) (Clathrin assembly protein assembly
protein complex 1 medium chain) (Uncoordinated protein
101)
Length = 422
Score = 162 bits (409), Expect = 2e-39
Identities = 91/248 (36%), Positives = 131/248 (52%), Gaps = 1/248 (0%)
Frame = +1
Query: 4 ILSAHVAGKVIMKSFLSGMPDCKFGFNDKLSLESKNRDDXXXXXXXXXXXXXXXXDDCQF 183
+L + + G V M+ +L+GMP+ + G NDK+ E R +D +F
Sbjct: 188 VLQSEIVGSVKMRVYLTGMPELRLGLNDKVLFEGSGRGKSKSVEL----------EDVKF 237
Query: 184 HQCVKLGRFETEHTISFIPPDGEFELMRYRTTKEINLPFRVIPLVREMGKSRMEVKLVVK 363
HQCV+L RF+T+ TISFIPPDG FELM YR T + + + SR+ + K
Sbjct: 238 HQCVRLSRFDTDRTISFIPPDGAFELMSYRLTTVVKPLIWIETSIERHSHSRVSFIIKAK 297
Query: 364 ANFKPNFFAQKVEVRIPTPTNTSGVQVICMKGKAKYKAAENAIVWKIKRMAGMKDCQLSA 543
+ FK A VE+ IP P++ + G KY ++A VW IK G K+ L+A
Sbjct: 298 SQFKRRSTANNVEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTIKNFPGGKEYLLTA 357
Query: 544 EIDLLTVGDRQKRWTRPPISMNFEVP-FAPSGFKVRYLKVFESKLNYSDHEVIKWVRYIG 720
+ L +V + RPPI + FE+P F SG +VRYLK+ E S ++ + WVRYI
Sbjct: 358 HLSLPSVMSEESE-GRPPIKVKFEIPYFTTSGIQVRYLKIIEK----SGYQALPWVRYIT 412
Query: 721 KSGLYETR 744
++G YE R
Sbjct: 413 QNGEYEMR 420
>sp|Q9BXS5|AP1M1_HUMAN Adaptor-related protein complex 1, mu 1 subunit (Mu-adaptin 1)
(Adaptor protein complex AP-1 mu-1 subunit) (Golgi
adaptor HA1/AP1 adaptin mu-1 subunit) (Clathrin assembly
protein assembly protein complex 1 medium chain 1)
(Clathrin coat assembly protein AP47) (Clathrin
coat-associated protein AP47) (AP-mu chain family member
mu1A)
Length = 423
Score = 161 bits (408), Expect = 2e-39
Identities = 89/248 (35%), Positives = 133/248 (53%), Gaps = 1/248 (0%)
Frame = +1
Query: 4 ILSAHVAGKVIMKSFLSGMPDCKFGFNDKLSLESKNRDDXXXXXXXXXXXXXXXXDDCQF 183
+L + + G + M+ FLSGMP+ + G NDK+ ++ R +D +F
Sbjct: 189 VLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVEL----------EDVKF 238
Query: 184 HQCVKLGRFETEHTISFIPPDGEFELMRYRTTKEINLPFRVIPLVREMGKSRMEVKLVVK 363
HQCV+L RFE + TISFIPPDGEFELM YR + + ++ + SR+E + K
Sbjct: 239 HQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMIKAK 298
Query: 364 ANFKPNFFAQKVEVRIPTPTNTSGVQVICMKGKAKYKAAENAIVWKIKRMAGMKDCQLSA 543
+ FK A VE+ IP P + + G K+ + IVW IK G K+ + A
Sbjct: 299 SQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSIKSFPGGKEYLMRA 358
Query: 544 EIDLLTVGDRQKRWTRPPISMNFEVP-FAPSGFKVRYLKVFESKLNYSDHEVIKWVRYIG 720
L +V + + + +PPIS+ FE+P F SG +VRYLK+ E S ++ + WVRYI
Sbjct: 359 HFGLPSV-EAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEK----SGYQALPWVRYIT 413
Query: 721 KSGLYETR 744
++G Y+ R
Sbjct: 414 QNGDYQLR 421
>sp|P35585|AP1M1_MOUSE Adaptor-related protein complex 1, mu 1 subunit (Mu-adaptin 1)
(Adaptor protein complex AP-1 mu-1 subunit) (Golgi
adaptor HA1/AP1 adaptin mu-1 subunit) (Clathrin assembly
protein assembly protein complex 1 medium chain 1)
(Clathrin coat assembly protein AP47) (Clathrin
coat-associated protein AP47) (AP-mu chain family member
mu1A)
Length = 423
Score = 160 bits (406), Expect = 3e-39
Identities = 88/248 (35%), Positives = 133/248 (53%), Gaps = 1/248 (0%)
Frame = +1
Query: 4 ILSAHVAGKVIMKSFLSGMPDCKFGFNDKLSLESKNRDDXXXXXXXXXXXXXXXXDDCQF 183
+L + + G + M+ FLSGMP+ + G NDK+ ++ R +D +F
Sbjct: 189 VLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVEL----------EDVKF 238
Query: 184 HQCVKLGRFETEHTISFIPPDGEFELMRYRTTKEINLPFRVIPLVREMGKSRMEVKLVVK 363
HQCV+L RFE + TISFIPPDGEFELM YR + + ++ + SR+E + K
Sbjct: 239 HQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAK 298
Query: 364 ANFKPNFFAQKVEVRIPTPTNTSGVQVICMKGKAKYKAAENAIVWKIKRMAGMKDCQLSA 543
+ FK A VE+ IP P + + G K+ + IVW +K G K+ + A
Sbjct: 299 SQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRA 358
Query: 544 EIDLLTVGDRQKRWTRPPISMNFEVP-FAPSGFKVRYLKVFESKLNYSDHEVIKWVRYIG 720
L +V + + + +PPIS+ FE+P F SG +VRYLK+ E S ++ + WVRYI
Sbjct: 359 HFGLPSV-EAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEK----SGYQALPWVRYIT 413
Query: 721 KSGLYETR 744
++G Y+ R
Sbjct: 414 QNGDYQLR 421
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,645,874
Number of Sequences: 369166
Number of extensions: 1893074
Number of successful extensions: 4899
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4845
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)