Planarian EST Database

DrC_00787

Cluster detail
GO Category :
Consensus Sequence :
>DrC_00787 AAAGGTATTTCATTTAATTAACAGTTTATTTTTAAACAAAATAAAATGGCTCCCAAAGGT AAAGTTGCAGCGAAATCGGCTAAAAAGATAACTAAAGATGCTGTTTTGAAAAATGAAAAG AAGAAAAGGTCACACAAGCGTAAGGAAAGTTATGGTATTTATATTTACAAAGTTTTGAGG CAAGTACATCCGGACACTGGAATTTCTGGTAAAGCTATGTCAATCATGAACAGTTTTGTC AATGATGTTTTCGAAAGAATTGCAAGTGAAGCTAGTAAGTTGGCTGCTTATAACAAGAGG TCGACCATTTCTAGTAGAGAAATTCAAACATCAGTCCGGTTAATATTGCCCGGTGAATTA TCCAAACATGCTGTAAGTGAAGGTACGAAAGCTGTCACTAAATACACTGGATCGAAATAA ATAAAATTATTTAGAGAACGAACAACGGTCCTCTTCAGGACCACAATAAATGGTTGTTGA TGTG

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00787
         (484 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q27484|H2B3_CAEEL  Probable histone H2B 3                      163   2e-40
sp|P02289|H2BE_STRPU  Histone H2B, embryonic                      163   2e-40
sp|Q27894|H2B2_CAEEL  Histone H2B 2                               163   2e-40
sp|P04255|H2B1_CAEEL  Histone H2B 1                               162   5e-40
sp|P02284|H2B_PATGR  Histone H2B, gonadal                         161   8e-40
sp|Q27876|H2B4_CAEEL  Probable histone H2B 4                      160   1e-39
sp|P02288|H2B2_PSAMI  Histone H2B.2, embryonic                    160   1e-39
sp|P02287|H2B1_PSAMI  Histone H2B.1, embryonic                    159   2e-39
sp|P19374|H2B_PLADU  Histone H2B                                  159   3e-39
sp|P35068|H2B1_TIGCA  Histone H2B.1/H2B.2                         159   4e-39

>sp|Q27484|H2B3_CAEEL Probable histone H2B 3
          Length = 123

 Score =  163 bits (413), Expect = 2e-40
 Identities = 88/124 (70%), Positives = 96/124 (77%)
 Frame = +1

Query: 46  MAPKGKVAAKSAKKITKDAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSI 225
           MAP  K +AK AKK  K                  Y +YIY+VL+QVHPDTG+S KAMSI
Sbjct: 1   MAPP-KPSAKGAKKAAKTVSKPKDGKKRKHARKESYSVYIYRVLKQVHPDTGVSSKAMSI 59

Query: 226 MNSFVNDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKY 405
           MNSFVNDVFERIASEAS+LA YNKRSTISSREIQT+VRLILPGEL+KHAVSEGTKAVTKY
Sbjct: 60  MNSFVNDVFERIASEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKY 119

Query: 406 TGSK 417
           T SK
Sbjct: 120 TSSK 123

>sp|P02289|H2BE_STRPU Histone H2B, embryonic
          Length = 124

 Score =  163 bits (413), Expect = 2e-40
 Identities = 86/124 (69%), Positives = 96/124 (77%)
 Frame = +1

Query: 46  MAPKGKVAAKSAKKITKDAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSI 225
           MAP  +VA K +KK  K                  YGIYIYKVL+QVHPDTGIS +AM I
Sbjct: 1   MAPTAQVAKKGSKKAVKGTKTAXGGKKRNRKRKESYGIYIYKVLKQVHPDTGISSRAMVI 60

Query: 226 MNSFVNDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKY 405
           MNSFVND+FERIA E+S+LA YNK+STISSREIQT+VRLILPGEL+KHAVSEGTKAVTKY
Sbjct: 61  MNSFVNDIFERIAGESSRLAQYNKKSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKY 120

Query: 406 TGSK 417
           T SK
Sbjct: 121 TTSK 124

>sp|Q27894|H2B2_CAEEL Histone H2B 2
          Length = 123

 Score =  163 bits (412), Expect = 2e-40
 Identities = 87/124 (70%), Positives = 96/124 (77%)
 Frame = +1

Query: 46  MAPKGKVAAKSAKKITKDAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSI 225
           MAP  K +AK AKK  K                  Y +YIY+VL+QVHPDTG+S KAMSI
Sbjct: 1   MAPP-KPSAKGAKKAAKTVTKPKDGKKRRHARKESYSVYIYRVLKQVHPDTGVSSKAMSI 59

Query: 226 MNSFVNDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKY 405
           MNSFVNDVFERIA+EAS+LA YNKRSTISSREIQT+VRLILPGEL+KHAVSEGTKAVTKY
Sbjct: 60  MNSFVNDVFERIAAEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKY 119

Query: 406 TGSK 417
           T SK
Sbjct: 120 TSSK 123

>sp|P04255|H2B1_CAEEL Histone H2B 1
          Length = 122

 Score =  162 bits (409), Expect = 5e-40
 Identities = 84/119 (70%), Positives = 93/119 (78%)
 Frame = +1

Query: 61  KVAAKSAKKITKDAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSIMNSFV 240
           K +AK AKK  K                  Y +YIY+VL+QVHPDTG+S KAMSIMNSFV
Sbjct: 4   KPSAKGAKKAAKTVTKPKDGKKRRHARKESYSVYIYRVLKQVHPDTGVSSKAMSIMNSFV 63

Query: 241 NDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKYTGSK 417
           NDVFERIA+EAS+LA YNKRSTISSREIQT+VRLILPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 64  NDVFERIAAEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSSK 122

>sp|P02284|H2B_PATGR Histone H2B, gonadal
          Length = 121

 Score =  161 bits (407), Expect = 8e-40
 Identities = 83/119 (69%), Positives = 94/119 (78%)
 Frame = +1

Query: 61  KVAAKSAKKITKDAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSIMNSFV 240
           KV++K AKK  K                  Y IYIYKVL+QVHPDTG+S KAMSIMNSFV
Sbjct: 3   KVSSKGAKKAGKAKAARSGDKKRKRRRKESYSIYIYKVLKQVHPDTGVSSKAMSIMNSFV 62

Query: 241 NDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKYTGSK 417
           ND+FERIA+EAS+LA YNKRSTI+SREIQT+VRL+LPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 63  NDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 121

>sp|Q27876|H2B4_CAEEL Probable histone H2B 4
          Length = 123

 Score =  160 bits (405), Expect = 1e-39
 Identities = 86/120 (71%), Positives = 94/120 (78%), Gaps = 1/120 (0%)
 Frame = +1

Query: 61  KVAAKSAKKITKDAVLXXXXXXXXXXXXXX-YGIYIYKVLRQVHPDTGISGKAMSIMNSF 237
           K +AK AKK  K  V                Y +YIY+VL+QVHPDTG+S KAMSIMNSF
Sbjct: 4   KPSAKGAKKAAKTVVAKPKDGKKRRHARKESYSVYIYRVLKQVHPDTGVSSKAMSIMNSF 63

Query: 238 VNDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKYTGSK 417
           VNDVFERIASEAS+LA YNKRSTISSREIQT+VRLILPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 64  VNDVFERIASEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSSK 123

>sp|P02288|H2B2_PSAMI Histone H2B.2, embryonic
          Length = 123

 Score =  160 bits (405), Expect = 1e-39
 Identities = 86/124 (69%), Positives = 96/124 (77%)
 Frame = +1

Query: 46  MAPKGKVAAKSAKKITKDAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSI 225
           MAP  +VA K +KK  K A                YGIYIYKVL+QVHPDTGIS +AM I
Sbjct: 1   MAPTAQVAKKGSKKAVK-APRPSGGKKRNRKRKESYGIYIYKVLKQVHPDTGISSRAMII 59

Query: 226 MNSFVNDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKY 405
           MNSFVND+FERIA E+S+LA YNK+STISSREIQT+VRLILPGEL+KHAVSEGTKAVTKY
Sbjct: 60  MNSFVNDIFERIAGESSRLAQYNKKSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKY 119

Query: 406 TGSK 417
           T SK
Sbjct: 120 TTSK 123

>sp|P02287|H2B1_PSAMI Histone H2B.1, embryonic
          Length = 123

 Score =  159 bits (403), Expect = 2e-39
 Identities = 83/124 (66%), Positives = 96/124 (77%)
 Frame = +1

Query: 46  MAPKGKVAAKSAKKITKDAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSI 225
           MAP G+VA K +KK  K                  YGIYIYKVL+QVHPDTG+S +AM+I
Sbjct: 1   MAPTGQVAKKGSKKAVKPP-RASGGKKRHRKRKESYGIYIYKVLKQVHPDTGVSSRAMTI 59

Query: 226 MNSFVNDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKY 405
           MNSFVND+FERIA EAS+L  YNK+STISSREIQT+VRL+LPGEL+KHAVSEGTKAVTKY
Sbjct: 60  MNSFVNDIFERIAGEASRLTQYNKKSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKY 119

Query: 406 TGSK 417
           T +K
Sbjct: 120 TTAK 123

>sp|P19374|H2B_PLADU Histone H2B
          Length = 123

 Score =  159 bits (402), Expect = 3e-39
 Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 1/120 (0%)
 Frame = +1

Query: 61  KVAAKSAKKITKDA-VLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSIMNSF 237
           KVA+K AKK    A                 Y IYIYKVL+QVHPDTGIS KAMSIMNSF
Sbjct: 4   KVASKGAKKAASKAKAARSGEKKKKRRRRESYSIYIYKVLKQVHPDTGISSKAMSIMNSF 63

Query: 238 VNDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKYTGSK 417
           VND+FERIA+EAS+LA YNKRSTI+SREIQT+VRL+LPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 64  VNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123

>sp|P35068|H2B1_TIGCA Histone H2B.1/H2B.2
          Length = 123

 Score =  159 bits (401), Expect = 4e-39
 Identities = 85/120 (70%), Positives = 95/120 (79%), Gaps = 1/120 (0%)
 Frame = +1

Query: 61  KVAAKSAKKITK-DAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSIMNSF 237
           KV+ K+AKK  K    +              Y IYIYKVL+QVHPDTGIS KAMSIMNSF
Sbjct: 4   KVSGKAAKKAGKAQKNITKGDKKKNRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSF 63

Query: 238 VNDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKYTGSK 417
           VND+FERIASEAS+LA YNKRSTI+SREIQT+VRL+LPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 64  VNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,566,275
Number of Sequences: 369166
Number of extensions: 816685
Number of successful extensions: 2187
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2185
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2871696580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00787

Planaria EST Database

DrC_00787

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail