Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_O03
(422 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q27484|H2B3_CAEEL Probable histone H2B 3 161 6e-40
sp|P04255|H2B1_CAEEL Histone H2B 1 160 8e-40
sp|Q27894|H2B2_CAEEL Histone H2B 2 160 8e-40
sp|Q27876|H2B4_CAEEL Probable histone H2B 4 159 2e-39
sp|P02284|H2B_PATGR Histone H2B, gonadal 159 2e-39
sp|P19374|H2B_PLADU Histone H2B 157 9e-39
sp|P07794|H2B3_PSAMI Late histone H2B.2.1 157 9e-39
sp|P35068|H2B1_TIGCA Histone H2B.1/H2B.2 157 9e-39
sp|P02289|H2BE_STRPU Histone H2B, embryonic 157 9e-39
sp|P35069|H2B3_TIGCA Histone H2B.3 157 9e-39
>sp|Q27484|H2B3_CAEEL Probable histone H2B 3
Length = 123
Score = 161 bits (407), Expect = 6e-40
Identities = 84/117 (71%), Positives = 92/117 (78%)
Frame = +2
Query: 5 AAKSAKKITKDAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSIMNSFVND 184
+AK AKK K Y +YIY+VL+QVHPDTG+S KAMSIMNSFVND
Sbjct: 7 SAKGAKKAAKTVSKPKDGKKRKHARKESYSVYIYRVLKQVHPDTGVSSKAMSIMNSFVND 66
Query: 185 VFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKYTGSK 355
VFERIASEAS+LA YNKRSTISSREIQT+VRLILPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 67 VFERIASEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSSK 123
>sp|P04255|H2B1_CAEEL Histone H2B 1
Length = 122
Score = 160 bits (406), Expect = 8e-40
Identities = 83/117 (70%), Positives = 92/117 (78%)
Frame = +2
Query: 5 AAKSAKKITKDAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSIMNSFVND 184
+AK AKK K Y +YIY+VL+QVHPDTG+S KAMSIMNSFVND
Sbjct: 6 SAKGAKKAAKTVTKPKDGKKRRHARKESYSVYIYRVLKQVHPDTGVSSKAMSIMNSFVND 65
Query: 185 VFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKYTGSK 355
VFERIA+EAS+LA YNKRSTISSREIQT+VRLILPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 66 VFERIAAEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSSK 122
>sp|Q27894|H2B2_CAEEL Histone H2B 2
Length = 123
Score = 160 bits (406), Expect = 8e-40
Identities = 83/117 (70%), Positives = 92/117 (78%)
Frame = +2
Query: 5 AAKSAKKITKDAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSIMNSFVND 184
+AK AKK K Y +YIY+VL+QVHPDTG+S KAMSIMNSFVND
Sbjct: 7 SAKGAKKAAKTVTKPKDGKKRRHARKESYSVYIYRVLKQVHPDTGVSSKAMSIMNSFVND 66
Query: 185 VFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKYTGSK 355
VFERIA+EAS+LA YNKRSTISSREIQT+VRLILPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 67 VFERIAAEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSSK 123
>sp|Q27876|H2B4_CAEEL Probable histone H2B 4
Length = 123
Score = 159 bits (402), Expect = 2e-39
Identities = 85/118 (72%), Positives = 93/118 (78%), Gaps = 1/118 (0%)
Frame = +2
Query: 5 AAKSAKKITKDAVLXXXXXXXXXXXXXX-YGIYIYKVLRQVHPDTGISGKAMSIMNSFVN 181
+AK AKK K V Y +YIY+VL+QVHPDTG+S KAMSIMNSFVN
Sbjct: 6 SAKGAKKAAKTVVAKPKDGKKRRHARKESYSVYIYRVLKQVHPDTGVSSKAMSIMNSFVN 65
Query: 182 DVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKYTGSK 355
DVFERIASEAS+LA YNKRSTISSREIQT+VRLILPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 66 DVFERIASEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSSK 123
>sp|P02284|H2B_PATGR Histone H2B, gonadal
Length = 121
Score = 159 bits (402), Expect = 2e-39
Identities = 82/118 (69%), Positives = 93/118 (78%)
Frame = +2
Query: 2 VAAKSAKKITKDAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSIMNSFVN 181
V++K AKK K Y IYIYKVL+QVHPDTG+S KAMSIMNSFVN
Sbjct: 4 VSSKGAKKAGKAKAARSGDKKRKRRRKESYSIYIYKVLKQVHPDTGVSSKAMSIMNSFVN 63
Query: 182 DVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKYTGSK 355
D+FERIA+EAS+LA YNKRSTI+SREIQT+VRL+LPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 64 DIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 121
>sp|P19374|H2B_PLADU Histone H2B
Length = 123
Score = 157 bits (397), Expect = 9e-39
Identities = 84/119 (70%), Positives = 93/119 (78%), Gaps = 1/119 (0%)
Frame = +2
Query: 2 VAAKSAKKITKDA-VLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSIMNSFV 178
VA+K AKK A Y IYIYKVL+QVHPDTGIS KAMSIMNSFV
Sbjct: 5 VASKGAKKAASKAKAARSGEKKKKRRRRESYSIYIYKVLKQVHPDTGISSKAMSIMNSFV 64
Query: 179 NDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKYTGSK 355
ND+FERIA+EAS+LA YNKRSTI+SREIQT+VRL+LPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 65 NDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
>sp|P07794|H2B3_PSAMI Late histone H2B.2.1
Length = 124
Score = 157 bits (397), Expect = 9e-39
Identities = 78/89 (87%), Positives = 85/89 (95%)
Frame = +2
Query: 89 YGIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASKLAAYNKRSTISSREIQT 268
YGIYIYKVL+QVHPDTGIS KAMSIMNSFVNDVFERIA EAS+LA YNK+STISSRE+QT
Sbjct: 36 YGIYIYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKKSTISSREVQT 95
Query: 269 SVRLILPGELSKHAVSEGTKAVTKYTGSK 355
+VRL+LPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 96 AVRLLLPGELAKHAVSEGTKAVTKYTTSK 124
>sp|P35068|H2B1_TIGCA Histone H2B.1/H2B.2
Length = 123
Score = 157 bits (397), Expect = 9e-39
Identities = 78/89 (87%), Positives = 85/89 (95%)
Frame = +2
Query: 89 YGIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASKLAAYNKRSTISSREIQT 268
Y IYIYKVL+QVHPDTGIS KAMSIMNSFVND+FERIASEAS+LA YNKRSTI+SREIQT
Sbjct: 35 YAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQT 94
Query: 269 SVRLILPGELSKHAVSEGTKAVTKYTGSK 355
+VRL+LPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 95 AVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
>sp|P02289|H2BE_STRPU Histone H2B, embryonic
Length = 124
Score = 157 bits (397), Expect = 9e-39
Identities = 83/118 (70%), Positives = 92/118 (77%)
Frame = +2
Query: 2 VAAKSAKKITKDAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSIMNSFVN 181
VA K +KK K YGIYIYKVL+QVHPDTGIS +AM IMNSFVN
Sbjct: 7 VAKKGSKKAVKGTKTAXGGKKRNRKRKESYGIYIYKVLKQVHPDTGISSRAMVIMNSFVN 66
Query: 182 DVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKYTGSK 355
D+FERIA E+S+LA YNK+STISSREIQT+VRLILPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 67 DIFERIAGESSRLAQYNKKSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTTSK 124
>sp|P35069|H2B3_TIGCA Histone H2B.3
Length = 123
Score = 157 bits (397), Expect = 9e-39
Identities = 78/89 (87%), Positives = 85/89 (95%)
Frame = +2
Query: 89 YGIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASKLAAYNKRSTISSREIQT 268
Y IYIYKVL+QVHPDTGIS KAMSIMNSFVND+FERIASEAS+LA YNKRSTI+SREIQT
Sbjct: 35 YAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQT 94
Query: 269 SVRLILPGELSKHAVSEGTKAVTKYTGSK 355
+VRL+LPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 95 AVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,599,108
Number of Sequences: 369166
Number of extensions: 702912
Number of successful extensions: 1919
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1917
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2052714815
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)