Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_K05
(427 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q27484|H2B3_CAEEL Probable histone H2B 3 162 3e-40
sp|P04255|H2B1_CAEEL Histone H2B 1 162 4e-40
sp|Q27894|H2B2_CAEEL Histone H2B 2 162 4e-40
sp|P02284|H2B_PATGR Histone H2B, gonadal 161 6e-40
sp|Q27876|H2B4_CAEEL Probable histone H2B 4 160 1e-39
sp|P19374|H2B_PLADU Histone H2B 159 2e-39
sp|P35068|H2B1_TIGCA Histone H2B.1/H2B.2 159 3e-39
sp|P35069|H2B3_TIGCA Histone H2B.3 159 3e-39
sp|Q76FD7|H2B_DROSE Histone H2B >gi|122053|sp|P17271|H2B_DR... 157 7e-39
sp|P02289|H2BE_STRPU Histone H2B, embryonic 157 7e-39
>sp|Q27484|H2B3_CAEEL Probable histone H2B 3
Length = 123
Score = 162 bits (410), Expect = 3e-40
Identities = 85/119 (71%), Positives = 93/119 (78%)
Frame = +2
Query: 5 KVAAKSAKKITKDAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSIMNSFV 184
K +AK AKK K Y +YIY+VL+QVHPDTG+S KAMSIMNSFV
Sbjct: 5 KPSAKGAKKAAKTVSKPKDGKKRKHARKESYSVYIYRVLKQVHPDTGVSSKAMSIMNSFV 64
Query: 185 NDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKYTGSK 361
NDVFERIASEAS+LA YNKRSTISSREIQT+VRLILPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 65 NDVFERIASEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSSK 123
>sp|P04255|H2B1_CAEEL Histone H2B 1
Length = 122
Score = 162 bits (409), Expect = 4e-40
Identities = 84/119 (70%), Positives = 93/119 (78%)
Frame = +2
Query: 5 KVAAKSAKKITKDAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSIMNSFV 184
K +AK AKK K Y +YIY+VL+QVHPDTG+S KAMSIMNSFV
Sbjct: 4 KPSAKGAKKAAKTVTKPKDGKKRRHARKESYSVYIYRVLKQVHPDTGVSSKAMSIMNSFV 63
Query: 185 NDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKYTGSK 361
NDVFERIA+EAS+LA YNKRSTISSREIQT+VRLILPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 64 NDVFERIAAEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSSK 122
>sp|Q27894|H2B2_CAEEL Histone H2B 2
Length = 123
Score = 162 bits (409), Expect = 4e-40
Identities = 84/119 (70%), Positives = 93/119 (78%)
Frame = +2
Query: 5 KVAAKSAKKITKDAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSIMNSFV 184
K +AK AKK K Y +YIY+VL+QVHPDTG+S KAMSIMNSFV
Sbjct: 5 KPSAKGAKKAAKTVTKPKDGKKRRHARKESYSVYIYRVLKQVHPDTGVSSKAMSIMNSFV 64
Query: 185 NDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKYTGSK 361
NDVFERIA+EAS+LA YNKRSTISSREIQT+VRLILPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 65 NDVFERIAAEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSSK 123
>sp|P02284|H2B_PATGR Histone H2B, gonadal
Length = 121
Score = 161 bits (407), Expect = 6e-40
Identities = 83/119 (69%), Positives = 94/119 (78%)
Frame = +2
Query: 5 KVAAKSAKKITKDAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSIMNSFV 184
KV++K AKK K Y IYIYKVL+QVHPDTG+S KAMSIMNSFV
Sbjct: 3 KVSSKGAKKAGKAKAARSGDKKRKRRRKESYSIYIYKVLKQVHPDTGVSSKAMSIMNSFV 62
Query: 185 NDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKYTGSK 361
ND+FERIA+EAS+LA YNKRSTI+SREIQT+VRL+LPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 63 NDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 121
>sp|Q27876|H2B4_CAEEL Probable histone H2B 4
Length = 123
Score = 160 bits (405), Expect = 1e-39
Identities = 86/120 (71%), Positives = 94/120 (78%), Gaps = 1/120 (0%)
Frame = +2
Query: 5 KVAAKSAKKITKDAVLXXXXXXXXXXXXXX-YGIYIYKVLRQVHPDTGISGKAMSIMNSF 181
K +AK AKK K V Y +YIY+VL+QVHPDTG+S KAMSIMNSF
Sbjct: 4 KPSAKGAKKAAKTVVAKPKDGKKRRHARKESYSVYIYRVLKQVHPDTGVSSKAMSIMNSF 63
Query: 182 VNDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKYTGSK 361
VNDVFERIASEAS+LA YNKRSTISSREIQT+VRLILPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 64 VNDVFERIASEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSSK 123
>sp|P19374|H2B_PLADU Histone H2B
Length = 123
Score = 159 bits (402), Expect = 2e-39
Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 1/120 (0%)
Frame = +2
Query: 5 KVAAKSAKKITKDA-VLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSIMNSF 181
KVA+K AKK A Y IYIYKVL+QVHPDTGIS KAMSIMNSF
Sbjct: 4 KVASKGAKKAASKAKAARSGEKKKKRRRRESYSIYIYKVLKQVHPDTGISSKAMSIMNSF 63
Query: 182 VNDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKYTGSK 361
VND+FERIA+EAS+LA YNKRSTI+SREIQT+VRL+LPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 64 VNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
>sp|P35068|H2B1_TIGCA Histone H2B.1/H2B.2
Length = 123
Score = 159 bits (401), Expect = 3e-39
Identities = 85/120 (70%), Positives = 95/120 (79%), Gaps = 1/120 (0%)
Frame = +2
Query: 5 KVAAKSAKKITK-DAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSIMNSF 181
KV+ K+AKK K + Y IYIYKVL+QVHPDTGIS KAMSIMNSF
Sbjct: 4 KVSGKAAKKAGKAQKNITKGDKKKNRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSF 63
Query: 182 VNDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKYTGSK 361
VND+FERIASEAS+LA YNKRSTI+SREIQT+VRL+LPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 64 VNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
>sp|P35069|H2B3_TIGCA Histone H2B.3
Length = 123
Score = 159 bits (401), Expect = 3e-39
Identities = 85/120 (70%), Positives = 95/120 (79%), Gaps = 1/120 (0%)
Frame = +2
Query: 5 KVAAKSAKKITK-DAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSIMNSF 181
KV+ K+AKK K + Y IYIYKVL+QVHPDTGIS KAMSIMNSF
Sbjct: 4 KVSGKAAKKAGKAQKNISKGDKKKNRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSF 63
Query: 182 VNDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKYTGSK 361
VND+FERIASEAS+LA YNKRSTI+SREIQT+VRL+LPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 64 VNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
>sp|Q76FD7|H2B_DROSE Histone H2B
sp|P17271|H2B_DROHY Histone H2B
Length = 123
Score = 157 bits (398), Expect = 7e-39
Identities = 84/119 (70%), Positives = 94/119 (78%)
Frame = +2
Query: 5 KVAAKSAKKITKDAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSIMNSFV 184
K A K+ K ITK+ Y IYIYKVL+QVHPDTGIS KAMSIMNSFV
Sbjct: 11 KKAGKAQKNITKN------DKKKKRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFV 64
Query: 185 NDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKYTGSK 361
ND+FERIA+EAS+LA YNKRSTI+SREIQT+VRL+LPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 65 NDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
>sp|P02289|H2BE_STRPU Histone H2B, embryonic
Length = 124
Score = 157 bits (398), Expect = 7e-39
Identities = 83/119 (69%), Positives = 93/119 (78%)
Frame = +2
Query: 5 KVAAKSAKKITKDAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSIMNSFV 184
+VA K +KK K YGIYIYKVL+QVHPDTGIS +AM IMNSFV
Sbjct: 6 QVAKKGSKKAVKGTKTAXGGKKRNRKRKESYGIYIYKVLKQVHPDTGISSRAMVIMNSFV 65
Query: 185 NDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKYTGSK 361
ND+FERIA E+S+LA YNK+STISSREIQT+VRLILPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 66 NDIFERIAGESSRLAQYNKKSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTTSK 124
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,925,693
Number of Sequences: 369166
Number of extensions: 707129
Number of successful extensions: 1832
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1830
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2102781030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)