Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_F23
(484 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q27484|H2B3_CAEEL Probable histone H2B 3 163 2e-40
sp|P02289|H2BE_STRPU Histone H2B, embryonic 163 2e-40
sp|Q27894|H2B2_CAEEL Histone H2B 2 163 2e-40
sp|P04255|H2B1_CAEEL Histone H2B 1 162 5e-40
sp|P02284|H2B_PATGR Histone H2B, gonadal 161 8e-40
sp|Q27876|H2B4_CAEEL Probable histone H2B 4 160 1e-39
sp|P02288|H2B2_PSAMI Histone H2B.2, embryonic 160 1e-39
sp|P02287|H2B1_PSAMI Histone H2B.1, embryonic 159 2e-39
sp|P19374|H2B_PLADU Histone H2B 159 3e-39
sp|P35068|H2B1_TIGCA Histone H2B.1/H2B.2 159 4e-39
>sp|Q27484|H2B3_CAEEL Probable histone H2B 3
Length = 123
Score = 163 bits (413), Expect = 2e-40
Identities = 88/124 (70%), Positives = 96/124 (77%)
Frame = +1
Query: 46 MAPKGKVAAKSAKKITKDAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSI 225
MAP K +AK AKK K Y +YIY+VL+QVHPDTG+S KAMSI
Sbjct: 1 MAPP-KPSAKGAKKAAKTVSKPKDGKKRKHARKESYSVYIYRVLKQVHPDTGVSSKAMSI 59
Query: 226 MNSFVNDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKY 405
MNSFVNDVFERIASEAS+LA YNKRSTISSREIQT+VRLILPGEL+KHAVSEGTKAVTKY
Sbjct: 60 MNSFVNDVFERIASEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKY 119
Query: 406 TGSK 417
T SK
Sbjct: 120 TSSK 123
>sp|P02289|H2BE_STRPU Histone H2B, embryonic
Length = 124
Score = 163 bits (413), Expect = 2e-40
Identities = 86/124 (69%), Positives = 96/124 (77%)
Frame = +1
Query: 46 MAPKGKVAAKSAKKITKDAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSI 225
MAP +VA K +KK K YGIYIYKVL+QVHPDTGIS +AM I
Sbjct: 1 MAPTAQVAKKGSKKAVKGTKTAXGGKKRNRKRKESYGIYIYKVLKQVHPDTGISSRAMVI 60
Query: 226 MNSFVNDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKY 405
MNSFVND+FERIA E+S+LA YNK+STISSREIQT+VRLILPGEL+KHAVSEGTKAVTKY
Sbjct: 61 MNSFVNDIFERIAGESSRLAQYNKKSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKY 120
Query: 406 TGSK 417
T SK
Sbjct: 121 TTSK 124
>sp|Q27894|H2B2_CAEEL Histone H2B 2
Length = 123
Score = 163 bits (412), Expect = 2e-40
Identities = 87/124 (70%), Positives = 96/124 (77%)
Frame = +1
Query: 46 MAPKGKVAAKSAKKITKDAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSI 225
MAP K +AK AKK K Y +YIY+VL+QVHPDTG+S KAMSI
Sbjct: 1 MAPP-KPSAKGAKKAAKTVTKPKDGKKRRHARKESYSVYIYRVLKQVHPDTGVSSKAMSI 59
Query: 226 MNSFVNDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKY 405
MNSFVNDVFERIA+EAS+LA YNKRSTISSREIQT+VRLILPGEL+KHAVSEGTKAVTKY
Sbjct: 60 MNSFVNDVFERIAAEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKY 119
Query: 406 TGSK 417
T SK
Sbjct: 120 TSSK 123
>sp|P04255|H2B1_CAEEL Histone H2B 1
Length = 122
Score = 162 bits (409), Expect = 5e-40
Identities = 84/119 (70%), Positives = 93/119 (78%)
Frame = +1
Query: 61 KVAAKSAKKITKDAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSIMNSFV 240
K +AK AKK K Y +YIY+VL+QVHPDTG+S KAMSIMNSFV
Sbjct: 4 KPSAKGAKKAAKTVTKPKDGKKRRHARKESYSVYIYRVLKQVHPDTGVSSKAMSIMNSFV 63
Query: 241 NDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKYTGSK 417
NDVFERIA+EAS+LA YNKRSTISSREIQT+VRLILPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 64 NDVFERIAAEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSSK 122
>sp|P02284|H2B_PATGR Histone H2B, gonadal
Length = 121
Score = 161 bits (407), Expect = 8e-40
Identities = 83/119 (69%), Positives = 94/119 (78%)
Frame = +1
Query: 61 KVAAKSAKKITKDAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSIMNSFV 240
KV++K AKK K Y IYIYKVL+QVHPDTG+S KAMSIMNSFV
Sbjct: 3 KVSSKGAKKAGKAKAARSGDKKRKRRRKESYSIYIYKVLKQVHPDTGVSSKAMSIMNSFV 62
Query: 241 NDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKYTGSK 417
ND+FERIA+EAS+LA YNKRSTI+SREIQT+VRL+LPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 63 NDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 121
>sp|Q27876|H2B4_CAEEL Probable histone H2B 4
Length = 123
Score = 160 bits (405), Expect = 1e-39
Identities = 86/120 (71%), Positives = 94/120 (78%), Gaps = 1/120 (0%)
Frame = +1
Query: 61 KVAAKSAKKITKDAVLXXXXXXXXXXXXXX-YGIYIYKVLRQVHPDTGISGKAMSIMNSF 237
K +AK AKK K V Y +YIY+VL+QVHPDTG+S KAMSIMNSF
Sbjct: 4 KPSAKGAKKAAKTVVAKPKDGKKRRHARKESYSVYIYRVLKQVHPDTGVSSKAMSIMNSF 63
Query: 238 VNDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKYTGSK 417
VNDVFERIASEAS+LA YNKRSTISSREIQT+VRLILPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 64 VNDVFERIASEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSSK 123
>sp|P02288|H2B2_PSAMI Histone H2B.2, embryonic
Length = 123
Score = 160 bits (405), Expect = 1e-39
Identities = 86/124 (69%), Positives = 96/124 (77%)
Frame = +1
Query: 46 MAPKGKVAAKSAKKITKDAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSI 225
MAP +VA K +KK K A YGIYIYKVL+QVHPDTGIS +AM I
Sbjct: 1 MAPTAQVAKKGSKKAVK-APRPSGGKKRNRKRKESYGIYIYKVLKQVHPDTGISSRAMII 59
Query: 226 MNSFVNDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKY 405
MNSFVND+FERIA E+S+LA YNK+STISSREIQT+VRLILPGEL+KHAVSEGTKAVTKY
Sbjct: 60 MNSFVNDIFERIAGESSRLAQYNKKSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKY 119
Query: 406 TGSK 417
T SK
Sbjct: 120 TTSK 123
>sp|P02287|H2B1_PSAMI Histone H2B.1, embryonic
Length = 123
Score = 159 bits (403), Expect = 2e-39
Identities = 83/124 (66%), Positives = 96/124 (77%)
Frame = +1
Query: 46 MAPKGKVAAKSAKKITKDAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSI 225
MAP G+VA K +KK K YGIYIYKVL+QVHPDTG+S +AM+I
Sbjct: 1 MAPTGQVAKKGSKKAVKPP-RASGGKKRHRKRKESYGIYIYKVLKQVHPDTGVSSRAMTI 59
Query: 226 MNSFVNDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKY 405
MNSFVND+FERIA EAS+L YNK+STISSREIQT+VRL+LPGEL+KHAVSEGTKAVTKY
Sbjct: 60 MNSFVNDIFERIAGEASRLTQYNKKSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKY 119
Query: 406 TGSK 417
T +K
Sbjct: 120 TTAK 123
>sp|P19374|H2B_PLADU Histone H2B
Length = 123
Score = 159 bits (402), Expect = 3e-39
Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 1/120 (0%)
Frame = +1
Query: 61 KVAAKSAKKITKDA-VLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSIMNSF 237
KVA+K AKK A Y IYIYKVL+QVHPDTGIS KAMSIMNSF
Sbjct: 4 KVASKGAKKAASKAKAARSGEKKKKRRRRESYSIYIYKVLKQVHPDTGISSKAMSIMNSF 63
Query: 238 VNDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKYTGSK 417
VND+FERIA+EAS+LA YNKRSTI+SREIQT+VRL+LPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 64 VNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
>sp|P35068|H2B1_TIGCA Histone H2B.1/H2B.2
Length = 123
Score = 159 bits (401), Expect = 4e-39
Identities = 85/120 (70%), Positives = 95/120 (79%), Gaps = 1/120 (0%)
Frame = +1
Query: 61 KVAAKSAKKITK-DAVLXXXXXXXXXXXXXXYGIYIYKVLRQVHPDTGISGKAMSIMNSF 237
KV+ K+AKK K + Y IYIYKVL+QVHPDTGIS KAMSIMNSF
Sbjct: 4 KVSGKAAKKAGKAQKNITKGDKKKNRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSF 63
Query: 238 VNDVFERIASEASKLAAYNKRSTISSREIQTSVRLILPGELSKHAVSEGTKAVTKYTGSK 417
VND+FERIASEAS+LA YNKRSTI+SREIQT+VRL+LPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 64 VNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,566,275
Number of Sequences: 369166
Number of extensions: 816685
Number of successful extensions: 2187
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2185
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2871696580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)