Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_F16
(383 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q27876|H2B4_CAEEL Probable histone H2B 4 157 5e-39
sp|Q27484|H2B3_CAEEL Probable histone H2B 3 157 5e-39
sp|P07794|H2B3_PSAMI Late histone H2B.2.1 157 7e-39
sp|P35068|H2B1_TIGCA Histone H2B.1/H2B.2 157 7e-39
sp|P35069|H2B3_TIGCA Histone H2B.3 157 7e-39
sp|P16890|H2BO_STRPU Late histone H2B.L4 156 1e-38
sp|P04255|H2B1_CAEEL Histone H2B 1 156 1e-38
sp|Q27894|H2B2_CAEEL Histone H2B 2 156 1e-38
sp|P07795|H2B4_PSAMI Late histone H2B.2.2 156 1e-38
sp|P19374|H2B_PLADU Histone H2B 156 2e-38
>sp|Q27876|H2B4_CAEEL Probable histone H2B 4
Length = 123
Score = 157 bits (398), Expect = 5e-39
Identities = 78/89 (87%), Positives = 85/89 (95%)
Frame = +2
Query: 50 YGIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASKLAAYNKRSTISSREIQT 229
Y +YIY+VL+QVHPDTG+S KAMSIMNSFVNDVFERIASEAS+LA YNKRSTISSREIQT
Sbjct: 35 YSVYIYRVLKQVHPDTGVSSKAMSIMNSFVNDVFERIASEASRLAHYNKRSTISSREIQT 94
Query: 230 SVRLILPGELSKHAVSEGTKAVTKYTGSK 316
+VRLILPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 95 AVRLILPGELAKHAVSEGTKAVTKYTSSK 123
>sp|Q27484|H2B3_CAEEL Probable histone H2B 3
Length = 123
Score = 157 bits (398), Expect = 5e-39
Identities = 78/89 (87%), Positives = 85/89 (95%)
Frame = +2
Query: 50 YGIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASKLAAYNKRSTISSREIQT 229
Y +YIY+VL+QVHPDTG+S KAMSIMNSFVNDVFERIASEAS+LA YNKRSTISSREIQT
Sbjct: 35 YSVYIYRVLKQVHPDTGVSSKAMSIMNSFVNDVFERIASEASRLAHYNKRSTISSREIQT 94
Query: 230 SVRLILPGELSKHAVSEGTKAVTKYTGSK 316
+VRLILPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 95 AVRLILPGELAKHAVSEGTKAVTKYTSSK 123
>sp|P07794|H2B3_PSAMI Late histone H2B.2.1
Length = 124
Score = 157 bits (397), Expect = 7e-39
Identities = 78/89 (87%), Positives = 85/89 (95%)
Frame = +2
Query: 50 YGIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASKLAAYNKRSTISSREIQT 229
YGIYIYKVL+QVHPDTGIS KAMSIMNSFVNDVFERIA EAS+LA YNK+STISSRE+QT
Sbjct: 36 YGIYIYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKKSTISSREVQT 95
Query: 230 SVRLILPGELSKHAVSEGTKAVTKYTGSK 316
+VRL+LPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 96 AVRLLLPGELAKHAVSEGTKAVTKYTTSK 124
>sp|P35068|H2B1_TIGCA Histone H2B.1/H2B.2
Length = 123
Score = 157 bits (397), Expect = 7e-39
Identities = 78/89 (87%), Positives = 85/89 (95%)
Frame = +2
Query: 50 YGIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASKLAAYNKRSTISSREIQT 229
Y IYIYKVL+QVHPDTGIS KAMSIMNSFVND+FERIASEAS+LA YNKRSTI+SREIQT
Sbjct: 35 YAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQT 94
Query: 230 SVRLILPGELSKHAVSEGTKAVTKYTGSK 316
+VRL+LPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 95 AVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
>sp|P35069|H2B3_TIGCA Histone H2B.3
Length = 123
Score = 157 bits (397), Expect = 7e-39
Identities = 78/89 (87%), Positives = 85/89 (95%)
Frame = +2
Query: 50 YGIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASKLAAYNKRSTISSREIQT 229
Y IYIYKVL+QVHPDTGIS KAMSIMNSFVND+FERIASEAS+LA YNKRSTI+SREIQT
Sbjct: 35 YAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQT 94
Query: 230 SVRLILPGELSKHAVSEGTKAVTKYTGSK 316
+VRL+LPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 95 AVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
>sp|P16890|H2BO_STRPU Late histone H2B.L4
Length = 107
Score = 156 bits (395), Expect = 1e-38
Identities = 77/89 (86%), Positives = 85/89 (95%)
Frame = +2
Query: 50 YGIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASKLAAYNKRSTISSREIQT 229
YGIYIYKVL+QVHPDTGIS +AMSIMNSFVNDVFERIA EAS+LA YNK+STISSRE+QT
Sbjct: 19 YGIYIYKVLKQVHPDTGISSRAMSIMNSFVNDVFERIAGEASRLAQYNKKSTISSREVQT 78
Query: 230 SVRLILPGELSKHAVSEGTKAVTKYTGSK 316
+VRL+LPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 79 AVRLLLPGELAKHAVSEGTKAVTKYTTSK 107
>sp|P04255|H2B1_CAEEL Histone H2B 1
Length = 122
Score = 156 bits (395), Expect = 1e-38
Identities = 77/89 (86%), Positives = 85/89 (95%)
Frame = +2
Query: 50 YGIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASKLAAYNKRSTISSREIQT 229
Y +YIY+VL+QVHPDTG+S KAMSIMNSFVNDVFERIA+EAS+LA YNKRSTISSREIQT
Sbjct: 34 YSVYIYRVLKQVHPDTGVSSKAMSIMNSFVNDVFERIAAEASRLAHYNKRSTISSREIQT 93
Query: 230 SVRLILPGELSKHAVSEGTKAVTKYTGSK 316
+VRLILPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 94 AVRLILPGELAKHAVSEGTKAVTKYTSSK 122
>sp|Q27894|H2B2_CAEEL Histone H2B 2
Length = 123
Score = 156 bits (395), Expect = 1e-38
Identities = 77/89 (86%), Positives = 85/89 (95%)
Frame = +2
Query: 50 YGIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASKLAAYNKRSTISSREIQT 229
Y +YIY+VL+QVHPDTG+S KAMSIMNSFVNDVFERIA+EAS+LA YNKRSTISSREIQT
Sbjct: 35 YSVYIYRVLKQVHPDTGVSSKAMSIMNSFVNDVFERIAAEASRLAHYNKRSTISSREIQT 94
Query: 230 SVRLILPGELSKHAVSEGTKAVTKYTGSK 316
+VRLILPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 95 AVRLILPGELAKHAVSEGTKAVTKYTSSK 123
>sp|P07795|H2B4_PSAMI Late histone H2B.2.2
Length = 124
Score = 156 bits (395), Expect = 1e-38
Identities = 77/89 (86%), Positives = 85/89 (95%)
Frame = +2
Query: 50 YGIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASKLAAYNKRSTISSREIQT 229
YGIYIYKVL+QVHPDTGIS KAMSIMNSFVNDVFERIA EAS+L+ YNK+STISSRE+QT
Sbjct: 36 YGIYIYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLSQYNKKSTISSREVQT 95
Query: 230 SVRLILPGELSKHAVSEGTKAVTKYTGSK 316
+VRL+LPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 96 AVRLLLPGELAKHAVSEGTKAVTKYTTSK 124
>sp|P19374|H2B_PLADU Histone H2B
Length = 123
Score = 156 bits (394), Expect = 2e-38
Identities = 77/89 (86%), Positives = 85/89 (95%)
Frame = +2
Query: 50 YGIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASKLAAYNKRSTISSREIQT 229
Y IYIYKVL+QVHPDTGIS KAMSIMNSFVND+FERIA+EAS+LA YNKRSTI+SREIQT
Sbjct: 35 YSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQT 94
Query: 230 SVRLILPGELSKHAVSEGTKAVTKYTGSK 316
+VRL+LPGEL+KHAVSEGTKAVTKYT SK
Sbjct: 95 AVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,497,744
Number of Sequences: 369166
Number of extensions: 665663
Number of successful extensions: 1870
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1868
length of database: 68,354,980
effective HSP length: 94
effective length of database: 50,989,890
effective search space used: 1682666370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)