Planaria EST Database

DrC_00772

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00772
         (1026 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8LAX0|HMT3_ARATH  Homocysteine S-methyltransferase 3 (S-...   153   7e-37
sp|Q9FUN0|HMT1_MAIZE  Homocysteine S-methyltransferase 1 (S-...   149   2e-35
sp|Q9SDL7|HMT1_ARATH  Homocysteine S-methyltransferase 1 (S-...   144   5e-34
sp|Q9FUM9|HMT2_MAIZE  Homocysteine S-methyltransferase 2 (S-...   140   8e-33
sp|Q9FUM8|HMT3_MAIZE  Homocysteine S-methyltransferase 3 (S-...   139   2e-32
sp|P56707|SMTA_ASTBI  Selenocysteine methyltransferase (SECY...   135   2e-31
sp|Q9FUM7|HMT4_MAIZE  Homocysteine S-methyltransferase 4 (S-...   134   3e-31
sp|Q9M1W4|HMT2_ARATH  Homocysteine S-methyltransferase 2 (S-...   134   4e-31
sp|Q47690|MMUM_ECOLI  Homocysteine S-methyltransferase (S-me...   127   7e-29
sp|Q12525|MHT1_YEAST  Homocysteine S-methyltransferase 1 (S-...    87   8e-17

>sp|Q8LAX0|HMT3_ARATH Homocysteine S-methyltransferase 3 (S-methylmethionine:homocysteine
           methyltransferase 3) (SMM:Hcy S-methyltransferase 3)
           (AtHMT-3)
          Length = 347

 Score =  153 bits (387), Expect = 7e-37
 Identities = 99/276 (35%), Positives = 147/276 (53%), Gaps = 14/276 (5%)
 Frame = +3

Query: 192 FLCAGAEVITSLSYQACPITLSSSFNMSIEDAKQLMVDSVLLAND--EILKYQ------- 344
           +L +GA +I + SYQA  I    +  +S+ +A+ L+  SV +  +  EI   +       
Sbjct: 65  YLESGANIIITASYQAT-IQGFVAKGLSVGEAENLLRRSVEITYEAREIFYNRCTKGSWD 123

Query: 345 ---SSKVERTSIMSAASIGSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKP 515
              + K  R  I+ AAS+GSYGA+L+D SEY+G Y D VSK  LK ++  ++  L     
Sbjct: 124 FAYAGKASRRPILVAASVGSYGAYLADGSEYSGIYGDSVSKETLKDFHRRRVQILAKSGA 183

Query: 516 DILAFETMPAMLDVELIIDLMREYP-NTSAWISMTSLDGIHTAHGELLDDVIEYIN-QYS 689
           D++AFET+P  L+ E   DL+ E   +  AW S TS DG+    G   D V+E      S
Sbjct: 184 DLIAFETIPNKLEAEAYADLLEEEDIDIPAWFSFTSKDGVSVPRG---DSVVECAKVADS 240

Query: 690 TKNVIGFGLNCVIPLMVVKDTVCKIRSRLNPDKIIVLYPNTGEVLNSLNRHWYFPEGVTE 869
            KNV+  G+NC  P  +       I  R    K IV+YPN+GEV + LN+ W   EG +E
Sbjct: 241 CKNVVAIGINCTAPRYI---HALIISLRQMTRKPIVVYPNSGEVYDGLNKKWIKSEGESE 297

Query: 870 NTFYEYIPSWIEAGAEWIGGCCRMSADRMIRVSDII 977
             F  Y+  W +AGA   GGCCR + + +  ++ ++
Sbjct: 298 EDFVSYVSKWRDAGASLFGGCCRTTPNTIRAIAKVL 333

>sp|Q9FUN0|HMT1_MAIZE Homocysteine S-methyltransferase 1 (S-methylmethionine:homocysteine
           methyltransferase 1) (SMM:Hcy S-methyltransferase 1)
           (ZmHMT-1)
          Length = 323

 Score =  149 bits (375), Expect = 2e-35
 Identities = 95/271 (35%), Positives = 151/271 (55%), Gaps = 6/271 (2%)
 Frame = +3

Query: 186 VRFLCAGAEVITSLSYQACPITLSSSFNMSIEDAKQLMVDSVLLAN---DEILK--YQSS 350
           +++L AGA+VI S SYQA  I    +  MS+ +A+ L+  SV LAN   DE  K   + S
Sbjct: 54  MQYLEAGADVIISSSYQAT-IPGFIARGMSVAEAEDLLRTSVKLANEARDEFWKSTLRKS 112

Query: 351 KVERTSIMSAASIGSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAF 530
           K      + AASIGSYGA+L+D SEY+GSY   ++   LK ++  ++  L    PD++AF
Sbjct: 113 KPIYNRALVAASIGSYGAYLADGSEYSGSYGADITAEKLKDFHRRRLQVLASAGPDLIAF 172

Query: 531 ETMPAMLDVELIIDLMREYP-NTSAWISMTSLDGIHTAHGELLDDVIEYINQYSTKNVIG 707
           E +P  ++ + +++L+ E      +WI  +S+DG +   GE   D ++ +N  +++ V  
Sbjct: 173 EAIPNQMEAQALVELLEEEKVQIPSWICFSSVDGKNLCSGESFADCLKILN--ASEKVAV 230

Query: 708 FGLNCVIPLMVVKDTVCKIRSRLNPDKIIVLYPNTGEVLNSLNRHWYFPEGVTENTFYEY 887
            G+NC  P   ++  +C+ R +    K I +YPN+GEV +   + W   E +   +F   
Sbjct: 231 VGVNCT-PPQFIEGIICEFRKQTK--KAIAVYPNSGEVWDGRAKRWLPVECLGHKSFDAL 287

Query: 888 IPSWIEAGAEWIGGCCRMSADRMIRVSDIIR 980
              W EAGA  IGGCCR +   +  VS I++
Sbjct: 288 AKRWQEAGASLIGGCCRTTPSTIRAVSKILK 318

>sp|Q9SDL7|HMT1_ARATH Homocysteine S-methyltransferase 1 (S-methylmethionine:homocysteine
           methyltransferase 1) (SMM:Hcy S-methyltransferase 1)
           (AtHMT-1)
          Length = 326

 Score =  144 bits (362), Expect = 5e-34
 Identities = 92/267 (34%), Positives = 152/267 (56%), Gaps = 6/267 (2%)
 Frame = +3

Query: 186 VRFLCAGAEVITSLSYQACPITLSSSFNMSIEDAKQLMVDSVLLANDEILKY--QSSKVE 359
           + +L AGA+++ + SYQA  I    S  +SIE+++ L+  SV LA +   ++  + SKV 
Sbjct: 60  MEYLEAGADIVVTSSYQAT-IPGFLSRGLSIEESESLLQKSVELAVEARDRFWEKVSKVS 118

Query: 360 RTSI---MSAASIGSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAF 530
             S    + AASIGSYGA+L+D SEY+G Y + VS   LK ++  ++  L+   PD+LAF
Sbjct: 119 GHSYNRALVAASIGSYGAYLADGSEYSGHYGENVSLDKLKDFHRRRLQVLVEAGPDLLAF 178

Query: 531 ETMPAMLDVELIIDLMREYP-NTSAWISMTSLDGIHTAHGELLDDVIEYINQYSTKNVIG 707
           ET+P  L+ +  ++L+ E      AWI  TS+DG     GE  ++ +E +N+  + N+  
Sbjct: 179 ETIPNKLEAQACVELLEEEKVQIPAWICFTSVDGEKAPSGESFEECLEPLNK--SNNIYA 236

Query: 708 FGLNCVIPLMVVKDTVCKIRSRLNPDKIIVLYPNTGEVLNSLNRHWYFPEGVTENTFYEY 887
            G+NC  P  +  + + +  ++L   K IV+YPN+GEV +   + W   +   ++ F  +
Sbjct: 237 VGINCAPPQFI--ENLIRKFAKLT-KKAIVVYPNSGEVWDGKAKQWLPSQCFGDDEFEMF 293

Query: 888 IPSWIEAGAEWIGGCCRMSADRMIRVS 968
              W + GA+ IGGCCR +   +  +S
Sbjct: 294 ATKWRDLGAKLIGGCCRTTPSTINAIS 320

>sp|Q9FUM9|HMT2_MAIZE Homocysteine S-methyltransferase 2 (S-methylmethionine:homocysteine
           methyltransferase 2) (SMM:Hcy S-methyltransferase 2)
           (ZmHMT-2)
          Length = 339

 Score =  140 bits (352), Expect = 8e-33
 Identities = 86/255 (33%), Positives = 137/255 (53%), Gaps = 6/255 (2%)
 Frame = +3

Query: 192 FLCAGAEVITSLSYQACPITLSSSFNMSIEDAKQLMVDSVLLANDEILKYQSSKVERTS- 368
           +L AGA +I + SYQA  I    S   S E ++ L+  SV +A +    +    +E+++ 
Sbjct: 65  YLEAGANIIITASYQAT-IQGFESKGFSKEQSENLLTKSVEIALEAREMFLKEHLEKSTP 123

Query: 369 ----IMSAASIGSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAFET 536
               ++ AAS+GSYGA+L+D SEY+G Y +  +K  LK ++  ++  L    PD++AFET
Sbjct: 124 IQHPVLVAASLGSYGAYLADGSEYSGDYGEAGTKEFLKDFHRRRLQVLAEAGPDLIAFET 183

Query: 537 MPAMLDVELIIDLMREYP-NTSAWISMTSLDGIHTAHGELLDDVIEYINQYSTKNVIGFG 713
           +P  L+ E  ++L+ E   N  AW S  S DG+H   G+ L +     ++ +    +  G
Sbjct: 184 IPNKLEAEAYVELLEECNINIPAWFSFNSKDGVHIVSGDSLIECTTIADKCAKVGAV--G 241

Query: 714 LNCVIPLMVVKDTVCKIRSRLNPDKIIVLYPNTGEVLNSLNRHWYFPEGVTENTFYEYIP 893
           +NC  P   +   +  IR     DK I++YPN+GE  +   + W    GV++  F  Y+ 
Sbjct: 242 INCT-PPRFIHGLILSIRK--VTDKPILIYPNSGERYDGEKKEWVESTGVSDGDFVSYVN 298

Query: 894 SWIEAGAEWIGGCCR 938
            W + GA  IGGCCR
Sbjct: 299 EWCKDGAVLIGGCCR 313

>sp|Q9FUM8|HMT3_MAIZE Homocysteine S-methyltransferase 3 (S-methylmethionine:homocysteine
           methyltransferase 3) (SMM:Hcy S-methyltransferase 3)
           (ZmHMT-3)
          Length = 338

 Score =  139 bits (349), Expect = 2e-32
 Identities = 84/255 (32%), Positives = 138/255 (54%), Gaps = 6/255 (2%)
 Frame = +3

Query: 192 FLCAGAEVITSLSYQACPITLSSSFNMSIEDAKQLMVDSVLLANDEILKYQSSKVERTS- 368
           +L AGA +I + SYQA  I    S   S E ++ L+  SV +A +    +    +E+++ 
Sbjct: 65  YLEAGANIIITASYQAT-IQGFESKGFSKEQSENLLTKSVQIALEAREMFLKEHLEKSTP 123

Query: 369 ----IMSAASIGSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAFET 536
               I+ AA++GSYGA+L+D SEY+G Y +  +K  LK ++  ++  L    PD++AFET
Sbjct: 124 IQHPILVAAALGSYGAYLADGSEYSGDYGEAGTKEFLKDFHRRRLQVLAEAGPDLIAFET 183

Query: 537 MPAMLDVELIIDLMREYP-NTSAWISMTSLDGIHTAHGELLDDVIEYINQYSTKNVIGFG 713
           +P  L+ +  ++L+ E   N  +W+S  S DG+H   G+ L +     ++ +    +  G
Sbjct: 184 IPNKLEAQAYVELLEECNINIPSWLSFNSKDGVHVVSGDSLIECATIADKCAKVGAV--G 241

Query: 714 LNCVIPLMVVKDTVCKIRSRLNPDKIIVLYPNTGEVLNSLNRHWYFPEGVTENTFYEYIP 893
           +NC  P   +   +  IR     DK I++YPN+GE  +   + W    GV++  F  Y+ 
Sbjct: 242 INCT-PPRFIHGLILSIRK--VTDKPILIYPNSGERYDGEKKEWVESTGVSDGDFVSYVN 298

Query: 894 SWIEAGAEWIGGCCR 938
            W + GA  IGGCCR
Sbjct: 299 EWCKDGAALIGGCCR 313

>sp|P56707|SMTA_ASTBI Selenocysteine methyltransferase (SECYS-methyltransferase)
           (SECYS-MT)
          Length = 338

 Score =  135 bits (340), Expect = 2e-31
 Identities = 87/278 (31%), Positives = 141/278 (50%), Gaps = 14/278 (5%)
 Frame = +3

Query: 192 FLCAGAEVITSLSYQACPITLSSSFNMSIEDAKQLMVDSVLLANDEILKYQSSKVERTS- 368
           +L  GA++I + SYQA  I    +   S E+ + L+  SV +A +    Y     E +S 
Sbjct: 58  YLENGADIIITASYQAT-IQGFKAKGFSDEEGEALLRRSVEIAREARDLYYQRCAESSSD 116

Query: 369 ------------IMSAASIGSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGK 512
                       I+ A S+GSYGA+L+D SE++G+Y D +    LK ++  ++  L    
Sbjct: 117 NGDDSRILKQRPILIAGSVGSYGAYLADGSEFSGNYGDAIKSETLKDFHRRKVQILADSG 176

Query: 513 PDILAFETMPAMLDVELIIDLMREYPN-TSAWISMTSLDGIHTAHGELLDDVIEYINQYS 689
            D+LAFE +P  L+ +   DL+ E    T AW + TS DG +   G+ +++        S
Sbjct: 177 VDLLAFEAVPNKLEAQAYADLLEEENIITPAWFAFTSKDGNNVVSGDSIEECGSIAE--S 234

Query: 690 TKNVIGFGLNCVIPLMVVKDTVCKIRSRLNPDKIIVLYPNTGEVLNSLNRHWYFPEGVTE 869
              V+  G+NC  P  +  D +  ++      K IV+YPN+GE  +++ + W    GVT+
Sbjct: 235 CDKVVAVGINCTPPRFI-HDLILLLKKVTA--KPIVIYPNSGETYDAIRKEWGQNSGVTD 291

Query: 870 NTFYEYIPSWIEAGAEWIGGCCRMSADRMIRVSDIIRS 983
             F  Y+  W E+GA  +GGCCR + D +  +  I+ S
Sbjct: 292 EDFVSYVDKWCESGASLVGGCCRTTPDTIRGIYKILSS 329

>sp|Q9FUM7|HMT4_MAIZE Homocysteine S-methyltransferase 4 (S-methylmethionine:homocysteine
           methyltransferase 4) (SMM:Hcy S-methyltransferase 4)
           (ZmHMT-4)
          Length = 342

 Score =  134 bits (338), Expect = 3e-31
 Identities = 91/272 (33%), Positives = 146/272 (53%), Gaps = 9/272 (3%)
 Frame = +3

Query: 192 FLCAGAEVITSLSYQACPITLSSSFNMSIEDAKQLMVDSVLLANDEILKY-----QSSKV 356
           +L AGA+VI S SYQA  I    S   S +++++L+  SV +A +    +     +SS+ 
Sbjct: 66  YLEAGADVIISASYQAT-IEGFQSRGFSRDESEELLRRSVHVAQEARRVFAAEGDRSSRR 124

Query: 357 ERTSIMSAASIGSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAFET 536
            R   + AAS+GSYGA+ +D SEY+G Y   ++K DLK ++  ++  L    PD++AFET
Sbjct: 125 GRPPALVAASVGSYGAYRADGSEYSGDYGKSMTKEDLKNFHRRRLQVLAGAGPDLIAFET 184

Query: 537 MPAMLDVELIIDLMREYP-NTSAWISMTSLDGIHTAHGELLDDVIEYINQYSTKNVIGFG 713
           +P  L+ ++  +L+ E      AW S TS DG++ A G+ +++     +  S   V   G
Sbjct: 185 IPNKLEAQVYAELLEENGIRIPAWFSFTSKDGVNAASGDPINECAAVAD--SCPRVDAVG 242

Query: 714 LNCVIPLMV--VKDTVCKIRSRLNPDKIIVLYPNTGEVLNSLNRHWYFPEGVT-ENTFYE 884
           +NC  P  +  +  ++ K+ S     K IV+YPN+GE   +    W   +G T  + F  
Sbjct: 243 VNCTAPRFIHGLILSIKKVTS-----KPIVVYPNSGETYVAETNEWVDSDGATGTDDFVS 297

Query: 885 YIPSWIEAGAEWIGGCCRMSADRMIRVSDIIR 980
            +  W  AGA  IGGCCR S   +  ++  +R
Sbjct: 298 RVGEWRRAGAALIGGCCRTSPATVRAIARAVR 329

>sp|Q9M1W4|HMT2_ARATH Homocysteine S-methyltransferase 2 (S-methylmethionine:homocysteine
           methyltransferase 2) (SMM:Hcy S-methyltransferase 2)
           (AtHMT-2)
          Length = 333

 Score =  134 bits (337), Expect = 4e-31
 Identities = 83/260 (31%), Positives = 139/260 (53%), Gaps = 11/260 (4%)
 Frame = +3

Query: 192 FLCAGAEVITSLSYQACPITLSSSFNMSIEDAKQLMVDSVLLANDEILKYQ-----SSKV 356
           +L AGA++I+S SYQA  I    +   S E+++ L+  SV +A +    Y      SS +
Sbjct: 61  YLEAGADIISSASYQAT-IQGFEAKGFSREESESLLKKSVEIATEARNSYYDKCGTSSSM 119

Query: 357 E-----RTSIMSAASIGSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDI 521
           +     +  I+ AAS+GSYGA+L+D SEY+G Y D ++   LK ++  ++  L     D+
Sbjct: 120 DDKILKKRPILVAASVGSYGAYLADGSEYSGIYGDSITLEKLKDFHRRRLQVLAESGADL 179

Query: 522 LAFETMPAMLDVELIIDLMREYP-NTSAWISMTSLDGIHTAHGELLDDVIEYINQYSTKN 698
           +AFET+P  ++ +   DL+ E       W S  S DG++   G+ + + I      + + 
Sbjct: 180 IAFETIPNKIEAQAFADLLEEGDVKIPGWFSFNSKDGVNVVSGDSIKECISIAE--NCEK 237

Query: 699 VIGFGLNCVIPLMVVKDTVCKIRSRLNPDKIIVLYPNTGEVLNSLNRHWYFPEGVTENTF 878
           V+  G+NC  P   ++  V +I    +  K I++YPN+GE  ++  + W    GV +  F
Sbjct: 238 VVAVGINCT-PPRFIEGLVLEIEKVTS--KPILVYPNSGESYDADRKEWVENTGVGDEDF 294

Query: 879 YEYIPSWIEAGAEWIGGCCR 938
             Y+  W++AG   +GGCCR
Sbjct: 295 VSYVEKWMDAGVSLLGGCCR 314

>sp|Q47690|MMUM_ECOLI Homocysteine S-methyltransferase (S-methylmethionine:homocysteine
           methyltransferase)
          Length = 310

 Score =  127 bits (318), Expect = 7e-29
 Identities = 78/247 (31%), Positives = 128/247 (51%), Gaps = 1/247 (0%)
 Frame = +3

Query: 201 AGAEVITSLSYQACPITLSSSFNMSIEDAKQLMVDSVLLANDEILKYQSSKVERTSIMSA 380
           AGA+   + SYQA P   ++   +    +K L+  SV LA      Y +   +  +++ A
Sbjct: 61  AGAQCAITASYQATPAGFAAR-GLDEAQSKALIGKSVELARKAREAYLAENPQAGTLLVA 119

Query: 381 ASIGSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAFETMPAMLDVE 560
            S+G YGA+L+D SEY G Y   V  F  + ++  ++  LL    D+LA ET+P   ++E
Sbjct: 120 GSVGPYGAYLADGSEYRGDYHCSVEAF--QAFHRPRVEALLDAGADLLACETLPNFSEIE 177

Query: 561 LIIDLMREYPNTSAWISMTSLDGIHTAHGELLDDVIEYINQYSTKNVIGFGLNCVIPLMV 740
            + +L+  YP   AW S T  D  H + G  L DV+  +  Y    V+  G+NC+     
Sbjct: 178 ALAELLTAYPRARAWFSFTLRDSEHLSDGTPLRDVVALLAGY--PQVVALGINCI----A 231

Query: 741 VKDTVCKIRSRLNPDKI-IVLYPNTGEVLNSLNRHWYFPEGVTENTFYEYIPSWIEAGAE 917
           +++T   ++       + +V+YPN+GE  +++++ W+   G       +Y+P W  AGA 
Sbjct: 232 LENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTWHH-HGEHCAQLADYLPQWQAAGAR 290

Query: 918 WIGGCCR 938
            IGGCCR
Sbjct: 291 LIGGCCR 297

>sp|Q12525|MHT1_YEAST Homocysteine S-methyltransferase 1 (S-methylmethionine:homocysteine
           methyltransferase 1) (SMM:Hcy S-methyltransferase 1)
          Length = 324

 Score = 87.0 bits (214), Expect = 8e-17
 Identities = 64/286 (22%), Positives = 133/286 (46%), Gaps = 4/286 (1%)
 Frame = +3

Query: 141 QKVIEKLLNSTSKGIVRFLCAGAEVITSLSYQACPITLSSSFNMSIEDAKQLMVDSVLLA 320
           +KV+E++          F+ AGA ++ +++YQA   ++S + ++    A +  +D ++  
Sbjct: 58  RKVVEEMYRD-------FMIAGANILMTITYQANFQSISENTSIKTLAAYKRFLDKIVSF 110

Query: 321 NDEILKYQSSKVERTSIMSAASIGSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQISTL 500
             E +  +   +         SIG + AH+S   EYTG Y       D   +++ Q+   
Sbjct: 111 TREFIGEERYLI--------GSIGPWAAHVS--CEYTGDYGPHPENIDYYGFFKPQLENF 160

Query: 501 LIGKP-DILAFETMPAMLDVELIIDLMREYPNTSAWISMTSLDGIHTAHGELLDDV---I 668
              +  D++ FET+P   +++ I+    +  +   +I ++  D      G  L+++   I
Sbjct: 161 NQNRDIDLIGFETIPNFHELKAILSWDEDIISKPFYIGLSVDDNSLLRDGTTLEEISVHI 220

Query: 669 EYINQYSTKNVIGFGLNCVIPLMVVKDTVCKIRSRLNPDKIIVLYPNTGEVLNSLNRHWY 848
           + +     KN++  G+NCV         + K+     P   +++YPN+GE+ N   + W+
Sbjct: 221 KGLGNKINKNLLLMGVNCVS--FNQSALILKMLHEHLPGMPLLVYPNSGEIYNPKEKTWH 278

Query: 849 FPEGVTENTFYEYIPSWIEAGAEWIGGCCRMSADRMIRVSDIIRSY 986
            P    ++ +   +  +++ GA  IGGCCR S   +  ++  +  Y
Sbjct: 279 RPTNKLDD-WETTVKKFVDNGARIIGGCCRTSPKDIAEIASAVDKY 323

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,782,802
Number of Sequences: 369166
Number of extensions: 2394143
Number of successful extensions: 6969
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6934
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 11005360850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00772

  1. Dr_sW_019_P12
  2. Dr_sW_013_D05
  3. Dr_sW_004_M07
  4. Dr_sW_003_C21