Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dr_sW_004_M07 (836 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q9FUN0|HMT1_MAIZE Homocysteine S-methyltransferase 1 (S-... 135 2e-31 sp|Q8LAX0|HMT3_ARATH Homocysteine S-methyltransferase 3 (S-... 132 1e-30 sp|Q9SDL7|HMT1_ARATH Homocysteine S-methyltransferase 1 (S-... 130 4e-30 sp|Q9FUM9|HMT2_MAIZE Homocysteine S-methyltransferase 2 (S-... 125 1e-28 sp|Q9FUM8|HMT3_MAIZE Homocysteine S-methyltransferase 3 (S-... 124 4e-28 sp|Q9FUM7|HMT4_MAIZE Homocysteine S-methyltransferase 4 (S-... 122 1e-27 sp|Q47690|MMUM_ECOLI Homocysteine S-methyltransferase (S-me... 119 1e-26 sp|Q9M1W4|HMT2_ARATH Homocysteine S-methyltransferase 2 (S-... 113 6e-25 sp|P56707|SMTA_ASTBI Selenocysteine methyltransferase (SECY... 110 5e-24 sp|Q12525|MHT1_YEAST Homocysteine S-methyltransferase 1 (S-... 80 5e-15
>sp|Q9FUN0|HMT1_MAIZE Homocysteine S-methyltransferase 1 (S-methylmethionine:homocysteine methyltransferase 1) (SMM:Hcy S-methyltransferase 1) (ZmHMT-1) Length = 323 Score = 135 bits (339), Expect = 2e-31 Identities = 92/268 (34%), Positives = 151/268 (56%), Gaps = 6/268 (2%) Frame = +2 Query: 14 ILDGGSGFEAIQLCKGKIDISNHICWSSRLLHDDQLIVREIYKRFLCAGAEVITSLSYQA 193 ++DGG A QL DI++ + WS+ L +V+E++ ++L AGA+VI S SYQA Sbjct: 16 VIDGGF---ATQLEALGADINDPL-WSAACLITRPHLVKEVHMQYLEAGADVIISSSYQA 71 Query: 194 CPITLSSSFNMSIEDAKQLMVDSVLLAN---DEILK--YQSSKVERTSIMSAASIGSYGA 358 I + MS+ +A+ L+ SV LAN DE K + SK + AASIGSYGA Sbjct: 72 T-IPGFIARGMSVAEAEDLLRTSVKLANEARDEFWKSTLRKSKPIYNRALVAASIGSYGA 130 Query: 359 HLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAFETMPAMLDVELIIDLMRE 538 +L+D SEY+GSY ++ LK ++ ++ L PD++AFE +P ++ + +++L+ E Sbjct: 131 YLADGSEYSGSYGADITAEKLKDFHRRRLQVLASAGPDLIAFEAIPNQMEAQALVELLEE 190 Query: 539 YP-NTSAWISMTSLDGIHTAHGELLDDVIEYINQYSTKNVIGFGLNCVIPLMVVKDTVCK 715 +WI +S+DG + GE D ++ +N +++ V G+NC P ++ +C+ Sbjct: 191 EKVQIPSWICFSSVDGKNLCSGESFADCLKILN--ASEKVAVVGVNCT-PPQFIEGIICE 247 Query: 716 IRSRLNPDKIIVLYPNTGEVLNSLNRHW 799 R + K I +YPN+GEV + + W Sbjct: 248 FRKQTK--KAIAVYPNSGEVWDGRAKRW 273
>sp|Q8LAX0|HMT3_ARATH Homocysteine S-methyltransferase 3 (S-methylmethionine:homocysteine methyltransferase 3) (SMM:Hcy S-methyltransferase 3) (AtHMT-3) Length = 347 Score = 132 bits (332), Expect = 1e-30 Identities = 96/276 (34%), Positives = 147/276 (53%), Gaps = 14/276 (5%) Frame = +2 Query: 14 ILDGGSGFEAIQLCKGKIDISNHICWSSRLLHDDQLIVREIYKRFLCAGAEVITSLSYQA 193 ++DGG A +L + DI++ + WS++ L +V +++ +L +GA +I + SYQA Sbjct: 25 VVDGGF---ATELQRHGADINDPL-WSAKCLITSPHLVTKVHLDYLESGANIIITASYQA 80 Query: 194 CPITLSSSFNMSIEDAKQLMVDSVLLAND--EILKYQ----------SSKVERTSIMSAA 337 I + +S+ +A+ L+ SV + + EI + + K R I+ AA Sbjct: 81 T-IQGFVAKGLSVGEAENLLRRSVEITYEAREIFYNRCTKGSWDFAYAGKASRRPILVAA 139 Query: 338 SIGSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAFETMPAMLDVEL 517 S+GSYGA+L+D SEY+G Y D VSK LK ++ ++ L D++AFET+P L+ E Sbjct: 140 SVGSYGAYLADGSEYSGIYGDSVSKETLKDFHRRRVQILAKSGADLIAFETIPNKLEAEA 199 Query: 518 IIDLMREYP-NTSAWISMTSLDGIHTAHGELLDDVIEYIN-QYSTKNVIGFGLNCVIPLM 691 DL+ E + AW S TS DG+ G D V+E S KNV+ G+NC P Sbjct: 200 YADLLEEEDIDIPAWFSFTSKDGVSVPRG---DSVVECAKVADSCKNVVAIGINCTAPRY 256 Query: 692 VVKDTVCKIRSRLNPDKIIVLYPNTGEVLNSLNRHW 799 + I R K IV+YPN+GEV + LN+ W Sbjct: 257 I---HALIISLRQMTRKPIVVYPNSGEVYDGLNKKW 289
>sp|Q9SDL7|HMT1_ARATH Homocysteine S-methyltransferase 1 (S-methylmethionine:homocysteine methyltransferase 1) (SMM:Hcy S-methyltransferase 1) (AtHMT-1) Length = 326 Score = 130 bits (327), Expect = 4e-30 Identities = 85/247 (34%), Positives = 142/247 (57%), Gaps = 6/247 (2%) Frame = +2 Query: 77 NHICWSSRLLHDDQLIVREIYKRFLCAGAEVITSLSYQACPITLSSSFNMSIEDAKQLMV 256 N WS+ L + +++ ++ +L AGA+++ + SYQA I S +SIE+++ L+ Sbjct: 39 NDPLWSAVSLIKNPELIKRVHMEYLEAGADIVVTSSYQAT-IPGFLSRGLSIEESESLLQ 97 Query: 257 DSVLLANDEILKY--QSSKVERTSI---MSAASIGSYGAHLSDLSEYTGSYVDKVSKFDL 421 SV LA + ++ + SKV S + AASIGSYGA+L+D SEY+G Y + VS L Sbjct: 98 KSVELAVEARDRFWEKVSKVSGHSYNRALVAASIGSYGAYLADGSEYSGHYGENVSLDKL 157 Query: 422 KTYYEEQISTLLIGKPDILAFETMPAMLDVELIIDLMREYP-NTSAWISMTSLDGIHTAH 598 K ++ ++ L+ PD+LAFET+P L+ + ++L+ E AWI TS+DG Sbjct: 158 KDFHRRRLQVLVEAGPDLLAFETIPNKLEAQACVELLEEEKVQIPAWICFTSVDGEKAPS 217 Query: 599 GELLDDVIEYINQYSTKNVIGFGLNCVIPLMVVKDTVCKIRSRLNPDKIIVLYPNTGEVL 778 GE ++ +E +N+ + N+ G+NC P + + + + ++L K IV+YPN+GEV Sbjct: 218 GESFEECLEPLNK--SNNIYAVGINCAPPQFI--ENLIRKFAKLT-KKAIVVYPNSGEVW 272 Query: 779 NSLNRHW 799 + + W Sbjct: 273 DGKAKQW 279
>sp|Q9FUM9|HMT2_MAIZE Homocysteine S-methyltransferase 2 (S-methylmethionine:homocysteine methyltransferase 2) (SMM:Hcy S-methyltransferase 2) (ZmHMT-2) Length = 339 Score = 125 bits (314), Expect = 1e-28 Identities = 84/268 (31%), Positives = 144/268 (53%), Gaps = 6/268 (2%) Frame = +2 Query: 14 ILDGGSGFEAIQLCKGKIDISNHICWSSRLLHDDQLIVREIYKRFLCAGAEVITSLSYQA 193 +LDGG A +L D+++ + WS++ L ++R+++ +L AGA +I + SYQA Sbjct: 25 VLDGGL---ATELEANGADLNDPL-WSAKCLLSSPHLIRKVHMDYLEAGANIIITASYQA 80 Query: 194 CPITLSSSFNMSIEDAKQLMVDSVLLANDEILKYQSSKVERTS-----IMSAASIGSYGA 358 I S S E ++ L+ SV +A + + +E+++ ++ AAS+GSYGA Sbjct: 81 T-IQGFESKGFSKEQSENLLTKSVEIALEAREMFLKEHLEKSTPIQHPVLVAASLGSYGA 139 Query: 359 HLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAFETMPAMLDVELIIDLMRE 538 +L+D SEY+G Y + +K LK ++ ++ L PD++AFET+P L+ E ++L+ E Sbjct: 140 YLADGSEYSGDYGEAGTKEFLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAEAYVELLEE 199 Query: 539 YP-NTSAWISMTSLDGIHTAHGELLDDVIEYINQYSTKNVIGFGLNCVIPLMVVKDTVCK 715 N AW S S DG+H G+ L + ++ + + G+NC P + + Sbjct: 200 CNINIPAWFSFNSKDGVHIVSGDSLIECTTIADKCAKVGAV--GINCT-PPRFIHGLILS 256 Query: 716 IRSRLNPDKIIVLYPNTGEVLNSLNRHW 799 IR DK I++YPN+GE + + W Sbjct: 257 IRK--VTDKPILIYPNSGERYDGEKKEW 282
>sp|Q9FUM8|HMT3_MAIZE Homocysteine S-methyltransferase 3 (S-methylmethionine:homocysteine methyltransferase 3) (SMM:Hcy S-methyltransferase 3) (ZmHMT-3) Length = 338 Score = 124 bits (310), Expect = 4e-28 Identities = 82/268 (30%), Positives = 145/268 (54%), Gaps = 6/268 (2%) Frame = +2 Query: 14 ILDGGSGFEAIQLCKGKIDISNHICWSSRLLHDDQLIVREIYKRFLCAGAEVITSLSYQA 193 +LDGG A +L D+++ + WS++ L ++R+++ +L AGA +I + SYQA Sbjct: 25 VLDGGL---ATELEANGADLNDPL-WSAKCLLSSPHLIRKVHMDYLEAGANIIITASYQA 80 Query: 194 CPITLSSSFNMSIEDAKQLMVDSVLLANDEILKYQSSKVERTS-----IMSAASIGSYGA 358 I S S E ++ L+ SV +A + + +E+++ I+ AA++GSYGA Sbjct: 81 T-IQGFESKGFSKEQSENLLTKSVQIALEAREMFLKEHLEKSTPIQHPILVAAALGSYGA 139 Query: 359 HLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAFETMPAMLDVELIIDLMRE 538 +L+D SEY+G Y + +K LK ++ ++ L PD++AFET+P L+ + ++L+ E Sbjct: 140 YLADGSEYSGDYGEAGTKEFLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEE 199 Query: 539 YP-NTSAWISMTSLDGIHTAHGELLDDVIEYINQYSTKNVIGFGLNCVIPLMVVKDTVCK 715 N +W+S S DG+H G+ L + ++ + + G+NC P + + Sbjct: 200 CNINIPSWLSFNSKDGVHVVSGDSLIECATIADKCAKVGAV--GINCT-PPRFIHGLILS 256 Query: 716 IRSRLNPDKIIVLYPNTGEVLNSLNRHW 799 IR DK I++YPN+GE + + W Sbjct: 257 IRK--VTDKPILIYPNSGERYDGEKKEW 282
>sp|Q9FUM7|HMT4_MAIZE Homocysteine S-methyltransferase 4 (S-methylmethionine:homocysteine methyltransferase 4) (SMM:Hcy S-methyltransferase 4) (ZmHMT-4) Length = 342 Score = 122 bits (306), Expect = 1e-27 Identities = 87/270 (32%), Positives = 147/270 (54%), Gaps = 8/270 (2%) Frame = +2 Query: 14 ILDGGSGFEAIQLCKGKIDISNHICWSSRLLHDDQLIVREIYKRFLCAGAEVITSLSYQA 193 ++DGG G E L D+ + + WS++ L ++R+++ +L AGA+VI S SYQA Sbjct: 26 VVDGGLGTE---LEAHGADLHDAL-WSAKCLASAPHLIRKVHLDYLEAGADVIISASYQA 81 Query: 194 CPITLSSSFNMSIEDAKQLMVDSVLLANDEILKY-----QSSKVERTSIMSAASIGSYGA 358 I S S +++++L+ SV +A + + +SS+ R + AAS+GSYGA Sbjct: 82 T-IEGFQSRGFSRDESEELLRRSVHVAQEARRVFAAEGDRSSRRGRPPALVAASVGSYGA 140 Query: 359 HLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAFETMPAMLDVELIIDLMRE 538 + +D SEY+G Y ++K DLK ++ ++ L PD++AFET+P L+ ++ +L+ E Sbjct: 141 YRADGSEYSGDYGKSMTKEDLKNFHRRRLQVLAGAGPDLIAFETIPNKLEAQVYAELLEE 200 Query: 539 YP-NTSAWISMTSLDGIHTAHGELLDDVIEYINQYSTKNVIGFGLNCVIPLMV--VKDTV 709 AW S TS DG++ A G+ +++ + S V G+NC P + + ++ Sbjct: 201 NGIRIPAWFSFTSKDGVNAASGDPINECAAVAD--SCPRVDAVGVNCTAPRFIHGLILSI 258 Query: 710 CKIRSRLNPDKIIVLYPNTGEVLNSLNRHW 799 K+ S K IV+YPN+GE + W Sbjct: 259 KKVTS-----KPIVVYPNSGETYVAETNEW 283
>sp|Q47690|MMUM_ECOLI Homocysteine S-methyltransferase (S-methylmethionine:homocysteine methyltransferase) Length = 310 Score = 119 bits (298), Expect = 1e-26 Identities = 73/255 (28%), Positives = 131/255 (51%), Gaps = 13/255 (5%) Frame = +2 Query: 89 WSSRLLHDDQLIVREIYKRFLCAGAEVITSLSYQACPITLSSSFNMSIEDAKQLMVDSVL 268 WS+++L ++ ++RE++ + AGA+ + SYQA P ++ + +K L+ SV Sbjct: 39 WSAKVLVENPELIREVHLDYYRAGAQCAITASYQATPAGFAAR-GLDEAQSKALIGKSVE 97 Query: 269 LANDEILKYQSSKVERTSIMSAASIGSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQIS 448 LA Y + + +++ A S+G YGA+L+D SEY G Y V F + ++ ++ Sbjct: 98 LARKAREAYLAENPQAGTLLVAGSVGPYGAYLADGSEYRGDYHCSVEAF--QAFHRPRVE 155 Query: 449 TLLIGKPDILAFETMPAMLDVELIIDLMREYPNTSAWISMTSLDGIHTAHGELLDDVIEY 628 LL D+LA ET+P ++E + +L+ YP AW S T D H + G L DV+ Sbjct: 156 ALLDAGADLLACETLPNFSEIEALAELLTAYPRARAWFSFTLRDSEHLSDGTPLRDVVAL 215 Query: 629 INQYSTKNVIGFGLNCVIPLMVVKDTVCKIRSRLNPDKI-IVLYPNTGEVLNSLNRHW-- 799 + Y V+ G+NC+ +++T ++ + +V+YPN+GE +++++ W Sbjct: 216 LAGY--PQVVALGINCI----ALENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTWHH 269 Query: 800 ----------YFPEW 814 Y P+W Sbjct: 270 HGEHCAQLADYLPQW 284
>sp|Q9M1W4|HMT2_ARATH Homocysteine S-methyltransferase 2 (S-methylmethionine:homocysteine methyltransferase 2) (SMM:Hcy S-methyltransferase 2) (AtHMT-2) Length = 333 Score = 113 bits (283), Expect = 6e-25 Identities = 79/273 (28%), Positives = 144/273 (52%), Gaps = 11/273 (4%) Frame = +2 Query: 14 ILDGGSGFEAIQLCKGKIDISNHICWSSRLLHDDQLIVREIYKRFLCAGAEVITSLSYQA 193 ++DGG A + + D+++ + WS++ L ++ ++ +L AGA++I+S SYQA Sbjct: 21 VIDGGL---ATEFERHGADLNDPL-WSAKCLVTSPHLIHTVHLDYLEAGADIISSASYQA 76 Query: 194 CPITLSSSFNMSIEDAKQLMVDSVLLANDEILKYQ-----SSKVE-----RTSIMSAASI 343 I + S E+++ L+ SV +A + Y SS ++ + I+ AAS+ Sbjct: 77 T-IQGFEAKGFSREESESLLKKSVEIATEARNSYYDKCGTSSSMDDKILKKRPILVAASV 135 Query: 344 GSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAFETMPAMLDVELII 523 GSYGA+L+D SEY+G Y D ++ LK ++ ++ L D++AFET+P ++ + Sbjct: 136 GSYGAYLADGSEYSGIYGDSITLEKLKDFHRRRLQVLAESGADLIAFETIPNKIEAQAFA 195 Query: 524 DLMREYP-NTSAWISMTSLDGIHTAHGELLDDVIEYINQYSTKNVIGFGLNCVIPLMVVK 700 DL+ E W S S DG++ G+ + + I + + V+ G+NC P ++ Sbjct: 196 DLLEEGDVKIPGWFSFNSKDGVNVVSGDSIKECISIAE--NCEKVVAVGINCT-PPRFIE 252 Query: 701 DTVCKIRSRLNPDKIIVLYPNTGEVLNSLNRHW 799 V +I + K I++YPN+GE ++ + W Sbjct: 253 GLVLEIEKVTS--KPILVYPNSGESYDADRKEW 283
>sp|P56707|SMTA_ASTBI Selenocysteine methyltransferase (SECYS-methyltransferase) (SECYS-MT) Length = 338 Score = 110 bits (275), Expect = 5e-24 Identities = 80/276 (28%), Positives = 140/276 (50%), Gaps = 14/276 (5%) Frame = +2 Query: 14 ILDGGSGFEAIQLCKGKIDISNHICWSSRLLHDDQLIVREIYKRFLCAGAEVITSLSYQA 193 ++ GG G E L + D+++ + WS++ L ++R+++ +L GA++I + SYQA Sbjct: 18 VIAGGLGTE---LQRHGADLNDPL-WSAKCLLSCPHLIRQVHLDYLENGADIIITASYQA 73 Query: 194 CPITLSSSFNMSIEDAKQLMVDSVLLANDEILKYQSSKVERTS-------------IMSA 334 I + S E+ + L+ SV +A + Y E +S I+ A Sbjct: 74 T-IQGFKAKGFSDEEGEALLRRSVEIAREARDLYYQRCAESSSDNGDDSRILKQRPILIA 132 Query: 335 ASIGSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAFETMPAMLDVE 514 S+GSYGA+L+D SE++G+Y D + LK ++ ++ L D+LAFE +P L+ + Sbjct: 133 GSVGSYGAYLADGSEFSGNYGDAIKSETLKDFHRRKVQILADSGVDLLAFEAVPNKLEAQ 192 Query: 515 LIIDLMREYP-NTSAWISMTSLDGIHTAHGELLDDVIEYINQYSTKNVIGFGLNCVIPLM 691 DL+ E T AW + TS DG + G+ +++ S V+ G+NC P Sbjct: 193 AYADLLEEENIITPAWFAFTSKDGNNVVSGDSIEECGSIAE--SCDKVVAVGINCT-PPR 249 Query: 692 VVKDTVCKIRSRLNPDKIIVLYPNTGEVLNSLNRHW 799 + D + ++ K IV+YPN+GE +++ + W Sbjct: 250 FIHDLILLLKK--VTAKPIVIYPNSGETYDAIRKEW 283
>sp|Q12525|MHT1_YEAST Homocysteine S-methyltransferase 1 (S-methylmethionine:homocysteine methyltransferase 1) (SMM:Hcy S-methyltransferase 1) Length = 324 Score = 80.5 bits (197), Expect = 5e-15 Identities = 66/280 (23%), Positives = 130/280 (46%), Gaps = 13/280 (4%) Frame = +2 Query: 8 IKILDGGSGFEAIQLCKGKIDISNHICWSSRLLHDDQL---------IVREIYKRFLCAG 160 + ILDGG G E L I+I++ + WS+ + +V E+Y+ F+ AG Sbjct: 17 VLILDGGQGTE---LENRGININSPV-WSAAPFTSESFWEPSSQERKVVEEMYRDFMIAG 72 Query: 161 AEVITSLSYQACPITLSSSFNMSIEDAKQLMVDSVLLANDEILKYQSSKVERTSIMSAAS 340 A ++ +++YQA ++S + ++ A + +D ++ E + + + S Sbjct: 73 ANILMTITYQANFQSISENTSIKTLAAYKRFLDKIVSFTREFIGEERYLI--------GS 124 Query: 341 IGSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKP-DILAFETMPAMLDVEL 517 IG + AH+S EYTG Y D +++ Q+ + D++ FET+P +++ Sbjct: 125 IGPWAAHVS--CEYTGDYGPHPENIDYYGFFKPQLENFNQNRDIDLIGFETIPNFHELKA 182 Query: 518 IIDLMREYPNTSAWISMTSLDGIHTAHGELLDDV---IEYINQYSTKNVIGFGLNCVIPL 688 I+ + + +I ++ D G L+++ I+ + KN++ G+NCV Sbjct: 183 ILSWDEDIISKPFYIGLSVDDNSLLRDGTTLEEISVHIKGLGNKINKNLLLMGVNCV--S 240 Query: 689 MVVKDTVCKIRSRLNPDKIIVLYPNTGEVLNSLNRHWYFP 808 + K+ P +++YPN+GE+ N + W+ P Sbjct: 241 FNQSALILKMLHEHLPGMPLLVYPNSGEIYNPKEKTWHRP 280
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,979,325 Number of Sequences: 369166 Number of extensions: 1926995 Number of successful extensions: 5415 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 5207 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5384 length of database: 68,354,980 effective HSP length: 109 effective length of database: 48,218,865 effective search space used: 8148988185 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)