Planarian EST Database


Dr_sW_004_M07

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_004_M07
         (836 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FUN0|HMT1_MAIZE  Homocysteine S-methyltransferase 1 (S-...   135   2e-31
sp|Q8LAX0|HMT3_ARATH  Homocysteine S-methyltransferase 3 (S-...   132   1e-30
sp|Q9SDL7|HMT1_ARATH  Homocysteine S-methyltransferase 1 (S-...   130   4e-30
sp|Q9FUM9|HMT2_MAIZE  Homocysteine S-methyltransferase 2 (S-...   125   1e-28
sp|Q9FUM8|HMT3_MAIZE  Homocysteine S-methyltransferase 3 (S-...   124   4e-28
sp|Q9FUM7|HMT4_MAIZE  Homocysteine S-methyltransferase 4 (S-...   122   1e-27
sp|Q47690|MMUM_ECOLI  Homocysteine S-methyltransferase (S-me...   119   1e-26
sp|Q9M1W4|HMT2_ARATH  Homocysteine S-methyltransferase 2 (S-...   113   6e-25
sp|P56707|SMTA_ASTBI  Selenocysteine methyltransferase (SECY...   110   5e-24
sp|Q12525|MHT1_YEAST  Homocysteine S-methyltransferase 1 (S-...    80   5e-15
>sp|Q9FUN0|HMT1_MAIZE Homocysteine S-methyltransferase 1 (S-methylmethionine:homocysteine
           methyltransferase 1) (SMM:Hcy S-methyltransferase 1)
           (ZmHMT-1)
          Length = 323

 Score =  135 bits (339), Expect = 2e-31
 Identities = 92/268 (34%), Positives = 151/268 (56%), Gaps = 6/268 (2%)
 Frame = +2

Query: 14  ILDGGSGFEAIQLCKGKIDISNHICWSSRLLHDDQLIVREIYKRFLCAGAEVITSLSYQA 193
           ++DGG    A QL     DI++ + WS+  L     +V+E++ ++L AGA+VI S SYQA
Sbjct: 16  VIDGGF---ATQLEALGADINDPL-WSAACLITRPHLVKEVHMQYLEAGADVIISSSYQA 71

Query: 194 CPITLSSSFNMSIEDAKQLMVDSVLLAN---DEILK--YQSSKVERTSIMSAASIGSYGA 358
             I    +  MS+ +A+ L+  SV LAN   DE  K   + SK      + AASIGSYGA
Sbjct: 72  T-IPGFIARGMSVAEAEDLLRTSVKLANEARDEFWKSTLRKSKPIYNRALVAASIGSYGA 130

Query: 359 HLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAFETMPAMLDVELIIDLMRE 538
           +L+D SEY+GSY   ++   LK ++  ++  L    PD++AFE +P  ++ + +++L+ E
Sbjct: 131 YLADGSEYSGSYGADITAEKLKDFHRRRLQVLASAGPDLIAFEAIPNQMEAQALVELLEE 190

Query: 539 YP-NTSAWISMTSLDGIHTAHGELLDDVIEYINQYSTKNVIGFGLNCVIPLMVVKDTVCK 715
                 +WI  +S+DG +   GE   D ++ +N  +++ V   G+NC  P   ++  +C+
Sbjct: 191 EKVQIPSWICFSSVDGKNLCSGESFADCLKILN--ASEKVAVVGVNCT-PPQFIEGIICE 247

Query: 716 IRSRLNPDKIIVLYPNTGEVLNSLNRHW 799
            R +    K I +YPN+GEV +   + W
Sbjct: 248 FRKQTK--KAIAVYPNSGEVWDGRAKRW 273
>sp|Q8LAX0|HMT3_ARATH Homocysteine S-methyltransferase 3 (S-methylmethionine:homocysteine
           methyltransferase 3) (SMM:Hcy S-methyltransferase 3)
           (AtHMT-3)
          Length = 347

 Score =  132 bits (332), Expect = 1e-30
 Identities = 96/276 (34%), Positives = 147/276 (53%), Gaps = 14/276 (5%)
 Frame = +2

Query: 14  ILDGGSGFEAIQLCKGKIDISNHICWSSRLLHDDQLIVREIYKRFLCAGAEVITSLSYQA 193
           ++DGG    A +L +   DI++ + WS++ L     +V +++  +L +GA +I + SYQA
Sbjct: 25  VVDGGF---ATELQRHGADINDPL-WSAKCLITSPHLVTKVHLDYLESGANIIITASYQA 80

Query: 194 CPITLSSSFNMSIEDAKQLMVDSVLLAND--EILKYQ----------SSKVERTSIMSAA 337
             I    +  +S+ +A+ L+  SV +  +  EI   +          + K  R  I+ AA
Sbjct: 81  T-IQGFVAKGLSVGEAENLLRRSVEITYEAREIFYNRCTKGSWDFAYAGKASRRPILVAA 139

Query: 338 SIGSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAFETMPAMLDVEL 517
           S+GSYGA+L+D SEY+G Y D VSK  LK ++  ++  L     D++AFET+P  L+ E 
Sbjct: 140 SVGSYGAYLADGSEYSGIYGDSVSKETLKDFHRRRVQILAKSGADLIAFETIPNKLEAEA 199

Query: 518 IIDLMREYP-NTSAWISMTSLDGIHTAHGELLDDVIEYIN-QYSTKNVIGFGLNCVIPLM 691
             DL+ E   +  AW S TS DG+    G   D V+E      S KNV+  G+NC  P  
Sbjct: 200 YADLLEEEDIDIPAWFSFTSKDGVSVPRG---DSVVECAKVADSCKNVVAIGINCTAPRY 256

Query: 692 VVKDTVCKIRSRLNPDKIIVLYPNTGEVLNSLNRHW 799
           +       I  R    K IV+YPN+GEV + LN+ W
Sbjct: 257 I---HALIISLRQMTRKPIVVYPNSGEVYDGLNKKW 289
>sp|Q9SDL7|HMT1_ARATH Homocysteine S-methyltransferase 1 (S-methylmethionine:homocysteine
           methyltransferase 1) (SMM:Hcy S-methyltransferase 1)
           (AtHMT-1)
          Length = 326

 Score =  130 bits (327), Expect = 4e-30
 Identities = 85/247 (34%), Positives = 142/247 (57%), Gaps = 6/247 (2%)
 Frame = +2

Query: 77  NHICWSSRLLHDDQLIVREIYKRFLCAGAEVITSLSYQACPITLSSSFNMSIEDAKQLMV 256
           N   WS+  L  +  +++ ++  +L AGA+++ + SYQA  I    S  +SIE+++ L+ 
Sbjct: 39  NDPLWSAVSLIKNPELIKRVHMEYLEAGADIVVTSSYQAT-IPGFLSRGLSIEESESLLQ 97

Query: 257 DSVLLANDEILKY--QSSKVERTSI---MSAASIGSYGAHLSDLSEYTGSYVDKVSKFDL 421
            SV LA +   ++  + SKV   S    + AASIGSYGA+L+D SEY+G Y + VS   L
Sbjct: 98  KSVELAVEARDRFWEKVSKVSGHSYNRALVAASIGSYGAYLADGSEYSGHYGENVSLDKL 157

Query: 422 KTYYEEQISTLLIGKPDILAFETMPAMLDVELIIDLMREYP-NTSAWISMTSLDGIHTAH 598
           K ++  ++  L+   PD+LAFET+P  L+ +  ++L+ E      AWI  TS+DG     
Sbjct: 158 KDFHRRRLQVLVEAGPDLLAFETIPNKLEAQACVELLEEEKVQIPAWICFTSVDGEKAPS 217

Query: 599 GELLDDVIEYINQYSTKNVIGFGLNCVIPLMVVKDTVCKIRSRLNPDKIIVLYPNTGEVL 778
           GE  ++ +E +N+  + N+   G+NC  P  +  + + +  ++L   K IV+YPN+GEV 
Sbjct: 218 GESFEECLEPLNK--SNNIYAVGINCAPPQFI--ENLIRKFAKLT-KKAIVVYPNSGEVW 272

Query: 779 NSLNRHW 799
           +   + W
Sbjct: 273 DGKAKQW 279
>sp|Q9FUM9|HMT2_MAIZE Homocysteine S-methyltransferase 2 (S-methylmethionine:homocysteine
           methyltransferase 2) (SMM:Hcy S-methyltransferase 2)
           (ZmHMT-2)
          Length = 339

 Score =  125 bits (314), Expect = 1e-28
 Identities = 84/268 (31%), Positives = 144/268 (53%), Gaps = 6/268 (2%)
 Frame = +2

Query: 14  ILDGGSGFEAIQLCKGKIDISNHICWSSRLLHDDQLIVREIYKRFLCAGAEVITSLSYQA 193
           +LDGG    A +L     D+++ + WS++ L     ++R+++  +L AGA +I + SYQA
Sbjct: 25  VLDGGL---ATELEANGADLNDPL-WSAKCLLSSPHLIRKVHMDYLEAGANIIITASYQA 80

Query: 194 CPITLSSSFNMSIEDAKQLMVDSVLLANDEILKYQSSKVERTS-----IMSAASIGSYGA 358
             I    S   S E ++ L+  SV +A +    +    +E+++     ++ AAS+GSYGA
Sbjct: 81  T-IQGFESKGFSKEQSENLLTKSVEIALEAREMFLKEHLEKSTPIQHPVLVAASLGSYGA 139

Query: 359 HLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAFETMPAMLDVELIIDLMRE 538
           +L+D SEY+G Y +  +K  LK ++  ++  L    PD++AFET+P  L+ E  ++L+ E
Sbjct: 140 YLADGSEYSGDYGEAGTKEFLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAEAYVELLEE 199

Query: 539 YP-NTSAWISMTSLDGIHTAHGELLDDVIEYINQYSTKNVIGFGLNCVIPLMVVKDTVCK 715
              N  AW S  S DG+H   G+ L +     ++ +    +  G+NC  P   +   +  
Sbjct: 200 CNINIPAWFSFNSKDGVHIVSGDSLIECTTIADKCAKVGAV--GINCT-PPRFIHGLILS 256

Query: 716 IRSRLNPDKIIVLYPNTGEVLNSLNRHW 799
           IR     DK I++YPN+GE  +   + W
Sbjct: 257 IRK--VTDKPILIYPNSGERYDGEKKEW 282
>sp|Q9FUM8|HMT3_MAIZE Homocysteine S-methyltransferase 3 (S-methylmethionine:homocysteine
           methyltransferase 3) (SMM:Hcy S-methyltransferase 3)
           (ZmHMT-3)
          Length = 338

 Score =  124 bits (310), Expect = 4e-28
 Identities = 82/268 (30%), Positives = 145/268 (54%), Gaps = 6/268 (2%)
 Frame = +2

Query: 14  ILDGGSGFEAIQLCKGKIDISNHICWSSRLLHDDQLIVREIYKRFLCAGAEVITSLSYQA 193
           +LDGG    A +L     D+++ + WS++ L     ++R+++  +L AGA +I + SYQA
Sbjct: 25  VLDGGL---ATELEANGADLNDPL-WSAKCLLSSPHLIRKVHMDYLEAGANIIITASYQA 80

Query: 194 CPITLSSSFNMSIEDAKQLMVDSVLLANDEILKYQSSKVERTS-----IMSAASIGSYGA 358
             I    S   S E ++ L+  SV +A +    +    +E+++     I+ AA++GSYGA
Sbjct: 81  T-IQGFESKGFSKEQSENLLTKSVQIALEAREMFLKEHLEKSTPIQHPILVAAALGSYGA 139

Query: 359 HLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAFETMPAMLDVELIIDLMRE 538
           +L+D SEY+G Y +  +K  LK ++  ++  L    PD++AFET+P  L+ +  ++L+ E
Sbjct: 140 YLADGSEYSGDYGEAGTKEFLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEE 199

Query: 539 YP-NTSAWISMTSLDGIHTAHGELLDDVIEYINQYSTKNVIGFGLNCVIPLMVVKDTVCK 715
              N  +W+S  S DG+H   G+ L +     ++ +    +  G+NC  P   +   +  
Sbjct: 200 CNINIPSWLSFNSKDGVHVVSGDSLIECATIADKCAKVGAV--GINCT-PPRFIHGLILS 256

Query: 716 IRSRLNPDKIIVLYPNTGEVLNSLNRHW 799
           IR     DK I++YPN+GE  +   + W
Sbjct: 257 IRK--VTDKPILIYPNSGERYDGEKKEW 282
>sp|Q9FUM7|HMT4_MAIZE Homocysteine S-methyltransferase 4 (S-methylmethionine:homocysteine
           methyltransferase 4) (SMM:Hcy S-methyltransferase 4)
           (ZmHMT-4)
          Length = 342

 Score =  122 bits (306), Expect = 1e-27
 Identities = 87/270 (32%), Positives = 147/270 (54%), Gaps = 8/270 (2%)
 Frame = +2

Query: 14  ILDGGSGFEAIQLCKGKIDISNHICWSSRLLHDDQLIVREIYKRFLCAGAEVITSLSYQA 193
           ++DGG G E   L     D+ + + WS++ L     ++R+++  +L AGA+VI S SYQA
Sbjct: 26  VVDGGLGTE---LEAHGADLHDAL-WSAKCLASAPHLIRKVHLDYLEAGADVIISASYQA 81

Query: 194 CPITLSSSFNMSIEDAKQLMVDSVLLANDEILKY-----QSSKVERTSIMSAASIGSYGA 358
             I    S   S +++++L+  SV +A +    +     +SS+  R   + AAS+GSYGA
Sbjct: 82  T-IEGFQSRGFSRDESEELLRRSVHVAQEARRVFAAEGDRSSRRGRPPALVAASVGSYGA 140

Query: 359 HLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAFETMPAMLDVELIIDLMRE 538
           + +D SEY+G Y   ++K DLK ++  ++  L    PD++AFET+P  L+ ++  +L+ E
Sbjct: 141 YRADGSEYSGDYGKSMTKEDLKNFHRRRLQVLAGAGPDLIAFETIPNKLEAQVYAELLEE 200

Query: 539 YP-NTSAWISMTSLDGIHTAHGELLDDVIEYINQYSTKNVIGFGLNCVIPLMV--VKDTV 709
                 AW S TS DG++ A G+ +++     +  S   V   G+NC  P  +  +  ++
Sbjct: 201 NGIRIPAWFSFTSKDGVNAASGDPINECAAVAD--SCPRVDAVGVNCTAPRFIHGLILSI 258

Query: 710 CKIRSRLNPDKIIVLYPNTGEVLNSLNRHW 799
            K+ S     K IV+YPN+GE   +    W
Sbjct: 259 KKVTS-----KPIVVYPNSGETYVAETNEW 283
>sp|Q47690|MMUM_ECOLI Homocysteine S-methyltransferase (S-methylmethionine:homocysteine
           methyltransferase)
          Length = 310

 Score =  119 bits (298), Expect = 1e-26
 Identities = 73/255 (28%), Positives = 131/255 (51%), Gaps = 13/255 (5%)
 Frame = +2

Query: 89  WSSRLLHDDQLIVREIYKRFLCAGAEVITSLSYQACPITLSSSFNMSIEDAKQLMVDSVL 268
           WS+++L ++  ++RE++  +  AGA+   + SYQA P   ++   +    +K L+  SV 
Sbjct: 39  WSAKVLVENPELIREVHLDYYRAGAQCAITASYQATPAGFAAR-GLDEAQSKALIGKSVE 97

Query: 269 LANDEILKYQSSKVERTSIMSAASIGSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQIS 448
           LA      Y +   +  +++ A S+G YGA+L+D SEY G Y   V  F  + ++  ++ 
Sbjct: 98  LARKAREAYLAENPQAGTLLVAGSVGPYGAYLADGSEYRGDYHCSVEAF--QAFHRPRVE 155

Query: 449 TLLIGKPDILAFETMPAMLDVELIIDLMREYPNTSAWISMTSLDGIHTAHGELLDDVIEY 628
            LL    D+LA ET+P   ++E + +L+  YP   AW S T  D  H + G  L DV+  
Sbjct: 156 ALLDAGADLLACETLPNFSEIEALAELLTAYPRARAWFSFTLRDSEHLSDGTPLRDVVAL 215

Query: 629 INQYSTKNVIGFGLNCVIPLMVVKDTVCKIRSRLNPDKI-IVLYPNTGEVLNSLNRHW-- 799
           +  Y    V+  G+NC+     +++T   ++       + +V+YPN+GE  +++++ W  
Sbjct: 216 LAGY--PQVVALGINCI----ALENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTWHH 269

Query: 800 ----------YFPEW 814
                     Y P+W
Sbjct: 270 HGEHCAQLADYLPQW 284
>sp|Q9M1W4|HMT2_ARATH Homocysteine S-methyltransferase 2 (S-methylmethionine:homocysteine
           methyltransferase 2) (SMM:Hcy S-methyltransferase 2)
           (AtHMT-2)
          Length = 333

 Score =  113 bits (283), Expect = 6e-25
 Identities = 79/273 (28%), Positives = 144/273 (52%), Gaps = 11/273 (4%)
 Frame = +2

Query: 14  ILDGGSGFEAIQLCKGKIDISNHICWSSRLLHDDQLIVREIYKRFLCAGAEVITSLSYQA 193
           ++DGG    A +  +   D+++ + WS++ L     ++  ++  +L AGA++I+S SYQA
Sbjct: 21  VIDGGL---ATEFERHGADLNDPL-WSAKCLVTSPHLIHTVHLDYLEAGADIISSASYQA 76

Query: 194 CPITLSSSFNMSIEDAKQLMVDSVLLANDEILKYQ-----SSKVE-----RTSIMSAASI 343
             I    +   S E+++ L+  SV +A +    Y      SS ++     +  I+ AAS+
Sbjct: 77  T-IQGFEAKGFSREESESLLKKSVEIATEARNSYYDKCGTSSSMDDKILKKRPILVAASV 135

Query: 344 GSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAFETMPAMLDVELII 523
           GSYGA+L+D SEY+G Y D ++   LK ++  ++  L     D++AFET+P  ++ +   
Sbjct: 136 GSYGAYLADGSEYSGIYGDSITLEKLKDFHRRRLQVLAESGADLIAFETIPNKIEAQAFA 195

Query: 524 DLMREYP-NTSAWISMTSLDGIHTAHGELLDDVIEYINQYSTKNVIGFGLNCVIPLMVVK 700
           DL+ E       W S  S DG++   G+ + + I      + + V+  G+NC  P   ++
Sbjct: 196 DLLEEGDVKIPGWFSFNSKDGVNVVSGDSIKECISIAE--NCEKVVAVGINCT-PPRFIE 252

Query: 701 DTVCKIRSRLNPDKIIVLYPNTGEVLNSLNRHW 799
             V +I    +  K I++YPN+GE  ++  + W
Sbjct: 253 GLVLEIEKVTS--KPILVYPNSGESYDADRKEW 283
>sp|P56707|SMTA_ASTBI Selenocysteine methyltransferase (SECYS-methyltransferase)
           (SECYS-MT)
          Length = 338

 Score =  110 bits (275), Expect = 5e-24
 Identities = 80/276 (28%), Positives = 140/276 (50%), Gaps = 14/276 (5%)
 Frame = +2

Query: 14  ILDGGSGFEAIQLCKGKIDISNHICWSSRLLHDDQLIVREIYKRFLCAGAEVITSLSYQA 193
           ++ GG G E   L +   D+++ + WS++ L     ++R+++  +L  GA++I + SYQA
Sbjct: 18  VIAGGLGTE---LQRHGADLNDPL-WSAKCLLSCPHLIRQVHLDYLENGADIIITASYQA 73

Query: 194 CPITLSSSFNMSIEDAKQLMVDSVLLANDEILKYQSSKVERTS-------------IMSA 334
             I    +   S E+ + L+  SV +A +    Y     E +S             I+ A
Sbjct: 74  T-IQGFKAKGFSDEEGEALLRRSVEIAREARDLYYQRCAESSSDNGDDSRILKQRPILIA 132

Query: 335 ASIGSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAFETMPAMLDVE 514
            S+GSYGA+L+D SE++G+Y D +    LK ++  ++  L     D+LAFE +P  L+ +
Sbjct: 133 GSVGSYGAYLADGSEFSGNYGDAIKSETLKDFHRRKVQILADSGVDLLAFEAVPNKLEAQ 192

Query: 515 LIIDLMREYP-NTSAWISMTSLDGIHTAHGELLDDVIEYINQYSTKNVIGFGLNCVIPLM 691
              DL+ E    T AW + TS DG +   G+ +++        S   V+  G+NC  P  
Sbjct: 193 AYADLLEEENIITPAWFAFTSKDGNNVVSGDSIEECGSIAE--SCDKVVAVGINCT-PPR 249

Query: 692 VVKDTVCKIRSRLNPDKIIVLYPNTGEVLNSLNRHW 799
            + D +  ++      K IV+YPN+GE  +++ + W
Sbjct: 250 FIHDLILLLKK--VTAKPIVIYPNSGETYDAIRKEW 283
>sp|Q12525|MHT1_YEAST Homocysteine S-methyltransferase 1 (S-methylmethionine:homocysteine
           methyltransferase 1) (SMM:Hcy S-methyltransferase 1)
          Length = 324

 Score = 80.5 bits (197), Expect = 5e-15
 Identities = 66/280 (23%), Positives = 130/280 (46%), Gaps = 13/280 (4%)
 Frame = +2

Query: 8   IKILDGGSGFEAIQLCKGKIDISNHICWSSRLLHDDQL---------IVREIYKRFLCAG 160
           + ILDGG G E   L    I+I++ + WS+     +           +V E+Y+ F+ AG
Sbjct: 17  VLILDGGQGTE---LENRGININSPV-WSAAPFTSESFWEPSSQERKVVEEMYRDFMIAG 72

Query: 161 AEVITSLSYQACPITLSSSFNMSIEDAKQLMVDSVLLANDEILKYQSSKVERTSIMSAAS 340
           A ++ +++YQA   ++S + ++    A +  +D ++    E +  +   +         S
Sbjct: 73  ANILMTITYQANFQSISENTSIKTLAAYKRFLDKIVSFTREFIGEERYLI--------GS 124

Query: 341 IGSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKP-DILAFETMPAMLDVEL 517
           IG + AH+S   EYTG Y       D   +++ Q+      +  D++ FET+P   +++ 
Sbjct: 125 IGPWAAHVS--CEYTGDYGPHPENIDYYGFFKPQLENFNQNRDIDLIGFETIPNFHELKA 182

Query: 518 IIDLMREYPNTSAWISMTSLDGIHTAHGELLDDV---IEYINQYSTKNVIGFGLNCVIPL 688
           I+    +  +   +I ++  D      G  L+++   I+ +     KN++  G+NCV   
Sbjct: 183 ILSWDEDIISKPFYIGLSVDDNSLLRDGTTLEEISVHIKGLGNKINKNLLLMGVNCV--S 240

Query: 689 MVVKDTVCKIRSRLNPDKIIVLYPNTGEVLNSLNRHWYFP 808
                 + K+     P   +++YPN+GE+ N   + W+ P
Sbjct: 241 FNQSALILKMLHEHLPGMPLLVYPNSGEIYNPKEKTWHRP 280
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,979,325
Number of Sequences: 369166
Number of extensions: 1926995
Number of successful extensions: 5415
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5384
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8148988185
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)