Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_D05
(856 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8LAX0|HMT3_ARATH Homocysteine S-methyltransferase 3 (S-... 146 6e-35
sp|Q9FUN0|HMT1_MAIZE Homocysteine S-methyltransferase 1 (S-... 138 2e-32
sp|Q9FUM9|HMT2_MAIZE Homocysteine S-methyltransferase 2 (S-... 134 2e-31
sp|Q9FUM8|HMT3_MAIZE Homocysteine S-methyltransferase 3 (S-... 133 7e-31
sp|Q9SDL7|HMT1_ARATH Homocysteine S-methyltransferase 1 (S-... 132 1e-30
sp|Q9FUM7|HMT4_MAIZE Homocysteine S-methyltransferase 4 (S-... 132 1e-30
sp|Q9M1W4|HMT2_ARATH Homocysteine S-methyltransferase 2 (S-... 124 3e-28
sp|P56707|SMTA_ASTBI Selenocysteine methyltransferase (SECY... 124 3e-28
sp|Q47690|MMUM_ECOLI Homocysteine S-methyltransferase (S-me... 120 5e-27
sp|Q12525|MHT1_YEAST Homocysteine S-methyltransferase 1 (S-... 87 5e-17
>sp|Q8LAX0|HMT3_ARATH Homocysteine S-methyltransferase 3 (S-methylmethionine:homocysteine
methyltransferase 3) (SMM:Hcy S-methyltransferase 3)
(AtHMT-3)
Length = 347
Score = 146 bits (369), Expect = 6e-35
Identities = 105/295 (35%), Positives = 156/295 (52%), Gaps = 14/295 (4%)
Frame = +2
Query: 14 GNIKILDGGSGFEAIQLCKGKIDISNHICWSSRLLHDDQLLVREIYKRFLCAGAEVITSL 193
G ++DGG A +L + DI++ + WS++ L LV +++ +L +GA +I +
Sbjct: 21 GGYAVVDGGF---ATELQRHGADINDPL-WSAKCLITSPHLVTKVHLDYLESGANIIITA 76
Query: 194 SYQACPITLSSSFNISIEEAKQLMVDSVLLAND--EILKYQ----------SSKAERTSI 337
SYQA I + +S+ EA+ L+ SV + + EI + + KA R I
Sbjct: 77 SYQAT-IQGFVAKGLSVGEAENLLRRSVEITYEAREIFYNRCTKGSWDFAYAGKASRRPI 135
Query: 338 MSAASIGSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAFETMPAML 517
+ AAS+GSYGA+L+D SEY+G Y D VSK LK ++ ++ L D++AFET+P L
Sbjct: 136 LVAASVGSYGAYLADGSEYSGIYGDSVSKETLKDFHRRRVQILAKSGADLIAFETIPNKL 195
Query: 518 DVELIIDLMREYP-NTSAWISMTSLDGIHTAHGELLDDVIEYIN-QYSTKNVIGFGLNCV 691
+ E DL+ E + AW S TS DG+ G D V+E S KNV+ G+NC
Sbjct: 196 EAEAYADLLEEEDIDIPAWFSFTSKDGVSVPRG---DSVVECAKVADSCKNVVAIGINCT 252
Query: 692 IPLMVVKDTVCKIRSRLNPDKIIVLYPNTGEVLNSLNRHWYFPEGVTENTFYEYI 856
P + I R K IV+YPN+GEV + LN+ W EG +E F Y+
Sbjct: 253 APRYI---HALIISLRQMTRKPIVVYPNSGEVYDGLNKKWIKSEGESEEDFVSYV 304
>sp|Q9FUN0|HMT1_MAIZE Homocysteine S-methyltransferase 1 (S-methylmethionine:homocysteine
methyltransferase 1) (SMM:Hcy S-methyltransferase 1)
(ZmHMT-1)
Length = 323
Score = 138 bits (347), Expect = 2e-32
Identities = 96/287 (33%), Positives = 157/287 (54%), Gaps = 6/287 (2%)
Frame = +2
Query: 2 IRHEGNIKILDGGSGFEAIQLCKGKIDISNHICWSSRLLHDDQLLVREIYKRFLCAGAEV 181
+ G ++DGG A QL DI++ + WS+ L LV+E++ ++L AGA+V
Sbjct: 8 VARAGGCAVIDGGF---ATQLEALGADINDPL-WSAACLITRPHLVKEVHMQYLEAGADV 63
Query: 182 ITSLSYQACPITLSSSFNISIEEAKQLMVDSVLLAN---DEILK--YQSSKAERTSIMSA 346
I S SYQA I + +S+ EA+ L+ SV LAN DE K + SK + A
Sbjct: 64 IISSSYQAT-IPGFIARGMSVAEAEDLLRTSVKLANEARDEFWKSTLRKSKPIYNRALVA 122
Query: 347 ASIGSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAFETMPAMLDVE 526
ASIGSYGA+L+D SEY+GSY ++ LK ++ ++ L PD++AFE +P ++ +
Sbjct: 123 ASIGSYGAYLADGSEYSGSYGADITAEKLKDFHRRRLQVLASAGPDLIAFEAIPNQMEAQ 182
Query: 527 LIIDLMREYP-NTSAWISMTSLDGIHTAHGELLDDVIEYINQYSTKNVIGFGLNCVIPLM 703
+++L+ E +WI +S+DG + GE D ++ +N +++ V G+NC P
Sbjct: 183 ALVELLEEEKVQIPSWICFSSVDGKNLCSGESFADCLKILN--ASEKVAVVGVNCT-PPQ 239
Query: 704 VVKDTVCKIRSRLNPDKIIVLYPNTGEVLNSLNRHWYFPEGVTENTF 844
++ +C+ R + K I +YPN+GEV + + W E + +F
Sbjct: 240 FIEGIICEFRKQTK--KAIAVYPNSGEVWDGRAKRWLPVECLGHKSF 284
>sp|Q9FUM9|HMT2_MAIZE Homocysteine S-methyltransferase 2 (S-methylmethionine:homocysteine
methyltransferase 2) (SMM:Hcy S-methyltransferase 2)
(ZmHMT-2)
Length = 339
Score = 134 bits (338), Expect = 2e-31
Identities = 90/287 (31%), Positives = 152/287 (52%), Gaps = 6/287 (2%)
Frame = +2
Query: 14 GNIKILDGGSGFEAIQLCKGKIDISNHICWSSRLLHDDQLLVREIYKRFLCAGAEVITSL 193
G +LDGG A +L D+++ + WS++ L L+R+++ +L AGA +I +
Sbjct: 21 GGRLVLDGGL---ATELEANGADLNDPL-WSAKCLLSSPHLIRKVHMDYLEAGANIIITA 76
Query: 194 SYQACPITLSSSFNISIEEAKQLMVDSVLLANDEILKYQSSKAERTS-----IMSAASIG 358
SYQA I S S E+++ L+ SV +A + + E+++ ++ AAS+G
Sbjct: 77 SYQAT-IQGFESKGFSKEQSENLLTKSVEIALEAREMFLKEHLEKSTPIQHPVLVAASLG 135
Query: 359 SYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAFETMPAMLDVELIID 538
SYGA+L+D SEY+G Y + +K LK ++ ++ L PD++AFET+P L+ E ++
Sbjct: 136 SYGAYLADGSEYSGDYGEAGTKEFLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAEAYVE 195
Query: 539 LMREYP-NTSAWISMTSLDGIHTAHGELLDDVIEYINQYSTKNVIGFGLNCVIPLMVVKD 715
L+ E N AW S S DG+H G+ L + ++ + + G+NC P +
Sbjct: 196 LLEECNINIPAWFSFNSKDGVHIVSGDSLIECTTIADKCAKVGAV--GINCT-PPRFIHG 252
Query: 716 TVCKIRSRLNPDKIIVLYPNTGEVLNSLNRHWYFPEGVTENTFYEYI 856
+ IR DK I++YPN+GE + + W GV++ F Y+
Sbjct: 253 LILSIRK--VTDKPILIYPNSGERYDGEKKEWVESTGVSDGDFVSYV 297
>sp|Q9FUM8|HMT3_MAIZE Homocysteine S-methyltransferase 3 (S-methylmethionine:homocysteine
methyltransferase 3) (SMM:Hcy S-methyltransferase 3)
(ZmHMT-3)
Length = 338
Score = 133 bits (334), Expect = 7e-31
Identities = 88/287 (30%), Positives = 153/287 (53%), Gaps = 6/287 (2%)
Frame = +2
Query: 14 GNIKILDGGSGFEAIQLCKGKIDISNHICWSSRLLHDDQLLVREIYKRFLCAGAEVITSL 193
G +LDGG A +L D+++ + WS++ L L+R+++ +L AGA +I +
Sbjct: 21 GGRLVLDGGL---ATELEANGADLNDPL-WSAKCLLSSPHLIRKVHMDYLEAGANIIITA 76
Query: 194 SYQACPITLSSSFNISIEEAKQLMVDSVLLANDEILKYQSSKAERTS-----IMSAASIG 358
SYQA I S S E+++ L+ SV +A + + E+++ I+ AA++G
Sbjct: 77 SYQAT-IQGFESKGFSKEQSENLLTKSVQIALEAREMFLKEHLEKSTPIQHPILVAAALG 135
Query: 359 SYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAFETMPAMLDVELIID 538
SYGA+L+D SEY+G Y + +K LK ++ ++ L PD++AFET+P L+ + ++
Sbjct: 136 SYGAYLADGSEYSGDYGEAGTKEFLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVE 195
Query: 539 LMREYP-NTSAWISMTSLDGIHTAHGELLDDVIEYINQYSTKNVIGFGLNCVIPLMVVKD 715
L+ E N +W+S S DG+H G+ L + ++ + + G+NC P +
Sbjct: 196 LLEECNINIPSWLSFNSKDGVHVVSGDSLIECATIADKCAKVGAV--GINCT-PPRFIHG 252
Query: 716 TVCKIRSRLNPDKIIVLYPNTGEVLNSLNRHWYFPEGVTENTFYEYI 856
+ IR DK I++YPN+GE + + W GV++ F Y+
Sbjct: 253 LILSIRK--VTDKPILIYPNSGERYDGEKKEWVESTGVSDGDFVSYV 297
>sp|Q9SDL7|HMT1_ARATH Homocysteine S-methyltransferase 1 (S-methylmethionine:homocysteine
methyltransferase 1) (SMM:Hcy S-methyltransferase 1)
(AtHMT-1)
Length = 326
Score = 132 bits (332), Expect = 1e-30
Identities = 91/278 (32%), Positives = 152/278 (54%), Gaps = 8/278 (2%)
Frame = +2
Query: 2 IRHEGNIKILDGGSGFEAIQLCKGKIDISNHICWSSRLLHDDQLLVREIYKRFLCAGAEV 181
I+ G ++DGG + +++ I N WS+ L + L++ ++ +L AGA++
Sbjct: 14 IKKCGGCAVVDGGFATQ-LEIHGAAI---NDPLWSAVSLIKNPELIKRVHMEYLEAGADI 69
Query: 182 ITSLSYQACPITLSSSFNISIEEAKQLMVDSVLLAND-------EILKYQSSKAERTSIM 340
+ + SYQA I S +SIEE++ L+ SV LA + ++ K R +
Sbjct: 70 VVTSSYQAT-IPGFLSRGLSIEESESLLQKSVELAVEARDRFWEKVSKVSGHSYNRALV- 127
Query: 341 SAASIGSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAFETMPAMLD 520
AASIGSYGA+L+D SEY+G Y + VS LK ++ ++ L+ PD+LAFET+P L+
Sbjct: 128 -AASIGSYGAYLADGSEYSGHYGENVSLDKLKDFHRRRLQVLVEAGPDLLAFETIPNKLE 186
Query: 521 VELIIDLMREYP-NTSAWISMTSLDGIHTAHGELLDDVIEYINQYSTKNVIGFGLNCVIP 697
+ ++L+ E AWI TS+DG GE ++ +E +N+ + N+ G+NC P
Sbjct: 187 AQACVELLEEEKVQIPAWICFTSVDGEKAPSGESFEECLEPLNK--SNNIYAVGINCAPP 244
Query: 698 LMVVKDTVCKIRSRLNPDKIIVLYPNTGEVLNSLNRHW 811
+ + + + ++L K IV+YPN+GEV + + W
Sbjct: 245 QFI--ENLIRKFAKLT-KKAIVVYPNSGEVWDGKAKQW 279
>sp|Q9FUM7|HMT4_MAIZE Homocysteine S-methyltransferase 4 (S-methylmethionine:homocysteine
methyltransferase 4) (SMM:Hcy S-methyltransferase 4)
(ZmHMT-4)
Length = 342
Score = 132 bits (332), Expect = 1e-30
Identities = 93/285 (32%), Positives = 153/285 (53%), Gaps = 8/285 (2%)
Frame = +2
Query: 2 IRHEGNIKILDGGSGFEAIQLCKGKIDISNHICWSSRLLHDDQLLVREIYKRFLCAGAEV 181
+R G ++DGG G E L D+ + + WS++ L L+R+++ +L AGA+V
Sbjct: 18 VREAGGCAVVDGGLGTE---LEAHGADLHDAL-WSAKCLASAPHLIRKVHLDYLEAGADV 73
Query: 182 ITSLSYQACPITLSSSFNISIEEAKQLMVDSVLLANDEILKY-----QSSKAERTSIMSA 346
I S SYQA I S S +E+++L+ SV +A + + +SS+ R + A
Sbjct: 74 IISASYQAT-IEGFQSRGFSRDESEELLRRSVHVAQEARRVFAAEGDRSSRRGRPPALVA 132
Query: 347 ASIGSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAFETMPAMLDVE 526
AS+GSYGA+ +D SEY+G Y ++K DLK ++ ++ L PD++AFET+P L+ +
Sbjct: 133 ASVGSYGAYRADGSEYSGDYGKSMTKEDLKNFHRRRLQVLAGAGPDLIAFETIPNKLEAQ 192
Query: 527 LIIDLMREYP-NTSAWISMTSLDGIHTAHGELLDDVIEYINQYSTKNVIGFGLNCVIPLM 703
+ +L+ E AW S TS DG++ A G+ +++ + S V G+NC P
Sbjct: 193 VYAELLEENGIRIPAWFSFTSKDGVNAASGDPINECAAVAD--SCPRVDAVGVNCTAPRF 250
Query: 704 V--VKDTVCKIRSRLNPDKIIVLYPNTGEVLNSLNRHWYFPEGVT 832
+ + ++ K+ S K IV+YPN+GE + W +G T
Sbjct: 251 IHGLILSIKKVTS-----KPIVVYPNSGETYVAETNEWVDSDGAT 290
>sp|Q9M1W4|HMT2_ARATH Homocysteine S-methyltransferase 2 (S-methylmethionine:homocysteine
methyltransferase 2) (SMM:Hcy S-methyltransferase 2)
(AtHMT-2)
Length = 333
Score = 124 bits (312), Expect = 3e-28
Identities = 85/296 (28%), Positives = 150/296 (50%), Gaps = 11/296 (3%)
Frame = +2
Query: 2 IRHEGNIKILDGGSGFEAIQLCKGKIDISNHICWSSRLLHDDQLLVREIYKRFLCAGAEV 181
++ G ++DGG A + + D+++ + WS++ L L+ ++ +L AGA++
Sbjct: 13 LKQTGGYAVIDGGL---ATEFERHGADLNDPL-WSAKCLVTSPHLIHTVHLDYLEAGADI 68
Query: 182 ITSLSYQACPITLSSSFNISIEEAKQLMVDSVLLANDEILKYQSSKAERTS--------- 334
I+S SYQA I + S EE++ L+ SV +A + Y +S
Sbjct: 69 ISSASYQAT-IQGFEAKGFSREESESLLKKSVEIATEARNSYYDKCGTSSSMDDKILKKR 127
Query: 335 -IMSAASIGSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAFETMPA 511
I+ AAS+GSYGA+L+D SEY+G Y D ++ LK ++ ++ L D++AFET+P
Sbjct: 128 PILVAASVGSYGAYLADGSEYSGIYGDSITLEKLKDFHRRRLQVLAESGADLIAFETIPN 187
Query: 512 MLDVELIIDLMREYP-NTSAWISMTSLDGIHTAHGELLDDVIEYINQYSTKNVIGFGLNC 688
++ + DL+ E W S S DG++ G+ + + I + + V+ G+NC
Sbjct: 188 KIEAQAFADLLEEGDVKIPGWFSFNSKDGVNVVSGDSIKECISIAE--NCEKVVAVGINC 245
Query: 689 VIPLMVVKDTVCKIRSRLNPDKIIVLYPNTGEVLNSLNRHWYFPEGVTENTFYEYI 856
P ++ V +I + K I++YPN+GE ++ + W GV + F Y+
Sbjct: 246 T-PPRFIEGLVLEIEKVTS--KPILVYPNSGESYDADRKEWVENTGVGDEDFVSYV 298
>sp|P56707|SMTA_ASTBI Selenocysteine methyltransferase (SECYS-methyltransferase)
(SECYS-MT)
Length = 338
Score = 124 bits (312), Expect = 3e-28
Identities = 89/299 (29%), Positives = 150/299 (50%), Gaps = 14/299 (4%)
Frame = +2
Query: 2 IRHEGNIKILDGGSGFEAIQLCKGKIDISNHICWSSRLLHDDQLLVREIYKRFLCAGAEV 181
+ G ++ GG G E L + D+++ + WS++ L L+R+++ +L GA++
Sbjct: 10 LHQAGRAAVIAGGLGTE---LQRHGADLNDPL-WSAKCLLSCPHLIRQVHLDYLENGADI 65
Query: 182 ITSLSYQACPITLSSSFNISIEEAKQLMVDSVLLANDEILKYQSSKAERTS--------- 334
I + SYQA I + S EE + L+ SV +A + Y AE +S
Sbjct: 66 IITASYQAT-IQGFKAKGFSDEEGEALLRRSVEIAREARDLYYQRCAESSSDNGDDSRIL 124
Query: 335 ----IMSAASIGSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKPDILAFET 502
I+ A S+GSYGA+L+D SE++G+Y D + LK ++ ++ L D+LAFE
Sbjct: 125 KQRPILIAGSVGSYGAYLADGSEFSGNYGDAIKSETLKDFHRRKVQILADSGVDLLAFEA 184
Query: 503 MPAMLDVELIIDLMREYP-NTSAWISMTSLDGIHTAHGELLDDVIEYINQYSTKNVIGFG 679
+P L+ + DL+ E T AW + TS DG + G+ +++ S V+ G
Sbjct: 185 VPNKLEAQAYADLLEEENIITPAWFAFTSKDGNNVVSGDSIEECGSIAE--SCDKVVAVG 242
Query: 680 LNCVIPLMVVKDTVCKIRSRLNPDKIIVLYPNTGEVLNSLNRHWYFPEGVTENTFYEYI 856
+NC P + D + ++ K IV+YPN+GE +++ + W GVT+ F Y+
Sbjct: 243 INCT-PPRFIHDLILLLKK--VTAKPIVIYPNSGETYDAIRKEWGQNSGVTDEDFVSYV 298
>sp|Q47690|MMUM_ECOLI Homocysteine S-methyltransferase (S-methylmethionine:homocysteine
methyltransferase)
Length = 310
Score = 120 bits (301), Expect = 5e-27
Identities = 71/239 (29%), Positives = 129/239 (53%), Gaps = 1/239 (0%)
Frame = +2
Query: 101 WSSRLLHDDQLLVREIYKRFLCAGAEVITSLSYQACPITLSSSFNISIEEAKQLMVDSVL 280
WS+++L ++ L+RE++ + AGA+ + SYQA P ++ + ++K L+ SV
Sbjct: 39 WSAKVLVENPELIREVHLDYYRAGAQCAITASYQATPAGFAAR-GLDEAQSKALIGKSVE 97
Query: 281 LANDEILKYQSSKAERTSIMSAASIGSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQIS 460
LA Y + + +++ A S+G YGA+L+D SEY G Y V F + ++ ++
Sbjct: 98 LARKAREAYLAENPQAGTLLVAGSVGPYGAYLADGSEYRGDYHCSVEAF--QAFHRPRVE 155
Query: 461 TLLIGKPDILAFETMPAMLDVELIIDLMREYPNTSAWISMTSLDGIHTAHGELLDDVIEY 640
LL D+LA ET+P ++E + +L+ YP AW S T D H + G L DV+
Sbjct: 156 ALLDAGADLLACETLPNFSEIEALAELLTAYPRARAWFSFTLRDSEHLSDGTPLRDVVAL 215
Query: 641 INQYSTKNVIGFGLNCVIPLMVVKDTVCKIRSRLNPDKI-IVLYPNTGEVLNSLNRHWY 814
+ Y V+ G+NC+ +++T ++ + +V+YPN+GE +++++ W+
Sbjct: 216 LAGY--PQVVALGINCI----ALENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTWH 268
>sp|Q12525|MHT1_YEAST Homocysteine S-methyltransferase 1 (S-methylmethionine:homocysteine
methyltransferase 1) (SMM:Hcy S-methyltransferase 1)
Length = 324
Score = 87.4 bits (215), Expect = 5e-17
Identities = 72/286 (25%), Positives = 134/286 (46%), Gaps = 13/286 (4%)
Frame = +2
Query: 2 IRHEGNIKILDGGSGFEAIQLCKGKIDISNHICWSSRLLHDDQL---------LVREIYK 154
+ H G + ILDGG G E L I+I++ + WS+ + +V E+Y+
Sbjct: 11 VEHPGKVLILDGGQGTE---LENRGININSPV-WSAAPFTSESFWEPSSQERKVVEEMYR 66
Query: 155 RFLCAGAEVITSLSYQACPITLSSSFNISIEEAKQLMVDSVLLANDEILKYQSSKAERTS 334
F+ AGA ++ +++YQA ++S + +I A + +D ++ E + ER
Sbjct: 67 DFMIAGANILMTITYQANFQSISENTSIKTLAAYKRFLDKIVSFTREFI-----GEERYL 121
Query: 335 IMSAASIGSYGAHLSDLSEYTGSYVDKVSKFDLKTYYEEQISTLLIGKP-DILAFETMPA 511
I SIG + AH+S EYTG Y D +++ Q+ + D++ FET+P
Sbjct: 122 I---GSIGPWAAHVS--CEYTGDYGPHPENIDYYGFFKPQLENFNQNRDIDLIGFETIPN 176
Query: 512 MLDVELIIDLMREYPNTSAWISMTSLDGIHTAHGELLDDV---IEYINQYSTKNVIGFGL 682
+++ I+ + + +I ++ D G L+++ I+ + KN++ G+
Sbjct: 177 FHELKAILSWDEDIISKPFYIGLSVDDNSLLRDGTTLEEISVHIKGLGNKINKNLLLMGV 236
Query: 683 NCVIPLMVVKDTVCKIRSRLNPDKIIVLYPNTGEVLNSLNRHWYFP 820
NCV + K+ P +++YPN+GE+ N + W+ P
Sbjct: 237 NCV--SFNQSALILKMLHEHLPGMPLLVYPNSGEIYNPKEKTWHRP 280
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,657,837
Number of Sequences: 369166
Number of extensions: 1978229
Number of successful extensions: 5535
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5504
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8438301375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)