Planaria EST Database

DrC_00768

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00768
         (939 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O00401|WASL_HUMAN  Neural Wiskott-Aldrich syndrome protei...    56   1e-07
sp|Q91YD9|WASL_MOUSE  Neural Wiskott-Aldrich syndrome protei...    56   1e-07
sp|Q95107|WASL_BOVIN  Neural Wiskott-Aldrich syndrome protei...    56   1e-07
sp|O08816|WASL_RAT  Neural Wiskott-Aldrich syndrome protein ...    56   1e-07
sp|P42768|WASP_HUMAN  Wiskott-Aldrich syndrome protein (WASp)      54   5e-07
sp|P70315|WASP_MOUSE  Wiskott-Aldrich syndrome protein homol...    54   5e-07
sp|Q12599|NOR2_CYLTO  Cytochrome P450 55A3 (Cytochrome P450N...    32   3.4  
sp|P55308|CATA2_HORVU  Catalase isozyme 2                          31   4.4  
sp|O13731|UBR11_SCHPO  Ubiquitin-protein ligase E3 component...    31   4.4  
sp|O14604|TYBY_HUMAN  Thymosin beta-4, Y-chromosomal               31   5.8  

>sp|O00401|WASL_HUMAN Neural Wiskott-Aldrich syndrome protein (N-WASP)
          Length = 505

 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
 Frame = +2

Query: 44  RKITKNDISIPTNFQHLDHMGL--NDHFFTSENDENLKKYFKGTQF-EHLLEDKNNLKDI 214
           +++TK DI  P+NFQH+ H+G   N  F  +  D  LK  F      E  L+D+   K I
Sbjct: 196 KRLTKADIGTPSNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCGISEAQLKDRETSKVI 255

Query: 215 YDFVEKHGGMSKLETEMKQKENKERRAPAIP 307
           YDF+EK GG+  ++ E++      R+AP  P
Sbjct: 256 YDFIEKTGGVEAVKNELR------RQAPPPP 280

>sp|Q91YD9|WASL_MOUSE Neural Wiskott-Aldrich syndrome protein (N-WASP)
          Length = 501

 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
 Frame = +2

Query: 44  RKITKNDISIPTNFQHLDHMGL--NDHFFTSENDENLKKYFKGTQF-EHLLEDKNNLKDI 214
           +++TK DI  P+NFQH+ H+G   N  F  +  D  LK  F      E  L+D+   K I
Sbjct: 193 KRLTKADIGTPSNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCGISEAQLKDRETSKVI 252

Query: 215 YDFVEKHGGMSKLETEMKQKENKERRAPAIP 307
           YDF+EK GG+  ++ E++      R+AP  P
Sbjct: 253 YDFIEKTGGVEAVKNELR------RQAPPPP 277

>sp|Q95107|WASL_BOVIN Neural Wiskott-Aldrich syndrome protein (N-WASP)
          Length = 505

 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
 Frame = +2

Query: 44  RKITKNDISIPTNFQHLDHMGL--NDHFFTSENDENLKKYFKGTQF-EHLLEDKNNLKDI 214
           +++TK DI  P+NFQH+ H+G   N  F  +  D  LK  F      E  L+D+   K I
Sbjct: 196 KRLTKADIGTPSNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCGISEAQLKDRETSKVI 255

Query: 215 YDFVEKHGGMSKLETEMKQKENKERRAPAIP 307
           YDF+EK GG+  ++ E++      R+AP  P
Sbjct: 256 YDFIEKTGGVEAVKNELR------RQAPPPP 280

>sp|O08816|WASL_RAT Neural Wiskott-Aldrich syndrome protein (N-WASP)
          Length = 501

 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
 Frame = +2

Query: 44  RKITKNDISIPTNFQHLDHMGL--NDHFFTSENDENLKKYFKGTQF-EHLLEDKNNLKDI 214
           +++TK DI  P+NFQH+ H+G   N  F  +  D  LK  F      E  L+D+   K I
Sbjct: 193 KRLTKADIGTPSNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCGISEAQLKDRETSKVI 252

Query: 215 YDFVEKHGGMSKLETEMKQKENKERRAPAIP 307
           YDF+EK GG+  ++ E++      R+AP  P
Sbjct: 253 YDFIEKTGGVEAVKNELR------RQAPPPP 277

>sp|P42768|WASP_HUMAN Wiskott-Aldrich syndrome protein (WASp)
          Length = 502

 Score = 54.3 bits (129), Expect = 5e-07
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
 Frame = +2

Query: 35  SGPRKITKNDISIPTNFQHLDHMGLN--DHFFTSENDENLKKYFKGTQF-EHLLEDKNNL 205
           SG +KI+K DI  P+ F+H+ H+G +  + F  +  D +L+  F      E  L D    
Sbjct: 228 SGKKKISKADIGAPSGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAGISEAQLTDAETS 287

Query: 206 KDIYDFVEKHGGMSKLETEMKQKE 277
           K IYDF+E  GG+  +  EM+++E
Sbjct: 288 KLIYDFIEDQGGLEAVRQEMRRQE 311

>sp|P70315|WASP_MOUSE Wiskott-Aldrich syndrome protein homolog (WASp)
          Length = 520

 Score = 54.3 bits (129), Expect = 5e-07
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
 Frame = +2

Query: 35  SGPRKITKNDISIPTNFQHLDHMGLN--DHFFTSENDENLKKYFKGTQF-EHLLEDKNNL 205
           SG +KI+K DI  P+ F+H+ H+G +  + F  +  D +L+  F      E  L D    
Sbjct: 230 SGKKKISKADIGAPSGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAGISEAQLTDAETS 289

Query: 206 KDIYDFVEKHGGMSKLETEMKQKE 277
           K IYDF+E  GG+  +  EM+++E
Sbjct: 290 KLIYDFIEDQGGLEAVRQEMRRQE 313

>sp|Q12599|NOR2_CYLTO Cytochrome P450 55A3 (Cytochrome P450NOR2)
          Length = 408

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
 Frame = +2

Query: 32  SSGPRKITKN-----DISIPTNFQHLDHMGLNDHFFTSENDENLKKYFKGTQFEHLLED- 193
           S+G +   KN     D+  P    H++   + + FFT ++ ENL+ Y K T  + LL D 
Sbjct: 79  SAGGKAAAKNKPTFVDMDAPA---HMNQRSMVEPFFTEDHVENLRPYIKET-VQGLLNDM 134

Query: 194 -KNNLKDIYDFVEK 232
             N  ++  D +EK
Sbjct: 135 VANGCEEPVDLIEK 148

>sp|P55308|CATA2_HORVU Catalase isozyme 2
          Length = 494

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 20  HHAYSSGPRKITKNDISIPTNFQHLDHMGLNDHFFTS 130
           HH  S        +D+ IPT+++H+D  G+N + F S
Sbjct: 178 HHPESLHTFFFLFDDVGIPTDYRHMDGFGVNTYTFVS 214

>sp|O13731|UBR11_SCHPO Ubiquitin-protein ligase E3 component N-recognin-11
           (N-end-recognizing protein 11)
          Length = 2052

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +2

Query: 173 FEHLLEDKNNLKDIYDFVEKHGGMSKLETE-MKQKENKERRA--PAIPKNT 316
           F+H L+D N++ D+ DF  +   +  L  E M+ +EN+   A  P + +NT
Sbjct: 435 FDHPLDDDNDVNDLLDFETEREDIDDLTDEVMETEENEAAEADYPGVNRNT 485

>sp|O14604|TYBY_HUMAN Thymosin beta-4, Y-chromosomal
          Length = 44

 Score = 30.8 bits (68), Expect = 5.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 551 LSEIVKFDTKKLKNNQNNPRPPLKSKEANE 640
           ++EI KFD  KLK  +   + PL SKE  E
Sbjct: 7   MAEIEKFDKSKLKKTETQEKNPLSSKETIE 36

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,951,492
Number of Sequences: 369166
Number of extensions: 1309599
Number of successful extensions: 3689
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3680
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9702894260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00768

  1. Dr_sW_020_M23
  2. Dr_sW_019_O12
  3. Dr_sW_014_F01
  4. Dr_sW_026_B13