Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_F01
(762 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O00401|WASL_HUMAN Neural Wiskott-Aldrich syndrome protei... 33 0.84
sp|Q91YD9|WASL_MOUSE Neural Wiskott-Aldrich syndrome protei... 33 0.84
sp|Q95107|WASL_BOVIN Neural Wiskott-Aldrich syndrome protei... 33 0.84
sp|O08816|WASL_RAT Neural Wiskott-Aldrich syndrome protein ... 33 0.84
sp|P42768|WASP_HUMAN Wiskott-Aldrich syndrome protein (WASp) 32 2.4
sp|P70315|WASP_MOUSE Wiskott-Aldrich syndrome protein homol... 32 2.4
sp|O14604|TYBY_HUMAN Thymosin beta-4, Y-chromosomal 31 4.2
sp|P20065|TYB4_MOUSE Thymosin beta-4 (T beta 4) [Contains: ... 30 5.4
sp|P62329|TYB4_RAT Thymosin beta-4 (T beta 4) [Contains: He... 30 5.4
sp|P34032|TYB4_RABIT Thymosin beta-4 (T beta 4) 30 5.4
>sp|O00401|WASL_HUMAN Neural Wiskott-Aldrich syndrome protein (N-WASP)
Length = 505
Score = 33.1 bits (74), Expect = 0.84
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +2
Query: 8 LEDKNNMKDIYDFVEKHGGMSKLETEMKQKENKERRAPAIP 130
L+D+ K IYDF+EK GG+ ++ E++ R+AP P
Sbjct: 246 LKDRETSKVIYDFIEKTGGVEAVKNELR------RQAPPPP 280
>sp|Q91YD9|WASL_MOUSE Neural Wiskott-Aldrich syndrome protein (N-WASP)
Length = 501
Score = 33.1 bits (74), Expect = 0.84
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +2
Query: 8 LEDKNNMKDIYDFVEKHGGMSKLETEMKQKENKERRAPAIP 130
L+D+ K IYDF+EK GG+ ++ E++ R+AP P
Sbjct: 243 LKDRETSKVIYDFIEKTGGVEAVKNELR------RQAPPPP 277
>sp|Q95107|WASL_BOVIN Neural Wiskott-Aldrich syndrome protein (N-WASP)
Length = 505
Score = 33.1 bits (74), Expect = 0.84
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +2
Query: 8 LEDKNNMKDIYDFVEKHGGMSKLETEMKQKENKERRAPAIP 130
L+D+ K IYDF+EK GG+ ++ E++ R+AP P
Sbjct: 246 LKDRETSKVIYDFIEKTGGVEAVKNELR------RQAPPPP 280
>sp|O08816|WASL_RAT Neural Wiskott-Aldrich syndrome protein (N-WASP)
Length = 501
Score = 33.1 bits (74), Expect = 0.84
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +2
Query: 8 LEDKNNMKDIYDFVEKHGGMSKLETEMKQKENKERRAPAIP 130
L+D+ K IYDF+EK GG+ ++ E++ R+AP P
Sbjct: 243 LKDRETSKVIYDFIEKTGGVEAVKNELR------RQAPPPP 277
>sp|P42768|WASP_HUMAN Wiskott-Aldrich syndrome protein (WASp)
Length = 502
Score = 31.6 bits (70), Expect = 2.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 8 LEDKNNMKDIYDFVEKHGGMSKLETEMKQKE 100
L D K IYDF+E GG+ + EM+++E
Sbjct: 281 LTDAETSKLIYDFIEDQGGLEAVRQEMRRQE 311
>sp|P70315|WASP_MOUSE Wiskott-Aldrich syndrome protein homolog (WASp)
Length = 520
Score = 31.6 bits (70), Expect = 2.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 8 LEDKNNMKDIYDFVEKHGGMSKLETEMKQKE 100
L D K IYDF+E GG+ + EM+++E
Sbjct: 283 LTDAETSKLIYDFIEDQGGLEAVRQEMRRQE 313
>sp|O14604|TYBY_HUMAN Thymosin beta-4, Y-chromosomal
Length = 44
Score = 30.8 bits (68), Expect = 4.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 374 LSEIVKFDTKKLKNNQNNPRPPLKSKEANE 463
++EI KFD KLK + + PL SKE E
Sbjct: 7 MAEIEKFDKSKLKKTETQEKNPLSSKETIE 36
>sp|P20065|TYB4_MOUSE Thymosin beta-4 (T beta 4) [Contains: Hematopoietic system
regulatory peptide (Seraspenide)]
Length = 50
Score = 30.4 bits (67), Expect = 5.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 374 LSEIVKFDTKKLKNNQNNPRPPLKSKEANE 463
++EI KFD KLK + + PL SKE E
Sbjct: 13 MAEIEKFDKSKLKKTETQEKNPLPSKETIE 42
>sp|P62329|TYB4_RAT Thymosin beta-4 (T beta 4) [Contains: Hematopoietic system
regulatory peptide (Seraspenide)]
sp|P62328|TYB4_HUMAN Thymosin beta-4 (T beta 4) (Fx) [Contains: Hematopoietic system
regulatory peptide (Seraspenide)]
Length = 44
Score = 30.4 bits (67), Expect = 5.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 374 LSEIVKFDTKKLKNNQNNPRPPLKSKEANE 463
++EI KFD KLK + + PL SKE E
Sbjct: 7 MAEIEKFDKSKLKKTETQEKNPLPSKETIE 36
>sp|P34032|TYB4_RABIT Thymosin beta-4 (T beta 4)
Length = 43
Score = 30.4 bits (67), Expect = 5.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 374 LSEIVKFDTKKLKNNQNNPRPPLKSKEANE 463
++EI KFD KLK + + PL SKE E
Sbjct: 6 MAEIEKFDKSKLKKTETQEKNPLPSKETIE 35
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,040,601
Number of Sequences: 369166
Number of extensions: 882214
Number of successful extensions: 2370
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2367
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7018522000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)