Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_B13
(733 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O14604|TYBY_HUMAN Thymosin beta-4, Y-chromosomal 31 3.9
sp|P20065|TYB4_MOUSE Thymosin beta-4 (T beta 4) [Contains: ... 30 5.1
sp|P62329|TYB4_RAT Thymosin beta-4 (T beta 4) [Contains: He... 30 5.1
sp|P34032|TYB4_RABIT Thymosin beta-4 (T beta 4) 30 5.1
sp|Q9DET5|TYBN_COTJA Thymosin beta 30 6.6
sp|P18758|TYB4_XENLA Thymosin beta-4 (T beta 4) (Thymosin b... 30 6.6
sp|P33248|TYB12_LATJA Thymosin beta-12 30 8.6
>sp|O14604|TYBY_HUMAN Thymosin beta-4, Y-chromosomal
Length = 44
Score = 30.8 bits (68), Expect = 3.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 345 LSEIVKFDTKKLKNNQNNPRPPLKSKEANE 434
++EI KFD KLK + + PL SKE E
Sbjct: 7 MAEIEKFDKSKLKKTETQEKNPLSSKETIE 36
>sp|P20065|TYB4_MOUSE Thymosin beta-4 (T beta 4) [Contains: Hematopoietic system
regulatory peptide (Seraspenide)]
Length = 50
Score = 30.4 bits (67), Expect = 5.1
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 345 LSEIVKFDTKKLKNNQNNPRPPLKSKEANE 434
++EI KFD KLK + + PL SKE E
Sbjct: 13 MAEIEKFDKSKLKKTETQEKNPLPSKETIE 42
>sp|P62329|TYB4_RAT Thymosin beta-4 (T beta 4) [Contains: Hematopoietic system
regulatory peptide (Seraspenide)]
sp|P62328|TYB4_HUMAN Thymosin beta-4 (T beta 4) (Fx) [Contains: Hematopoietic system
regulatory peptide (Seraspenide)]
Length = 44
Score = 30.4 bits (67), Expect = 5.1
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 345 LSEIVKFDTKKLKNNQNNPRPPLKSKEANE 434
++EI KFD KLK + + PL SKE E
Sbjct: 7 MAEIEKFDKSKLKKTETQEKNPLPSKETIE 36
>sp|P34032|TYB4_RABIT Thymosin beta-4 (T beta 4)
Length = 43
Score = 30.4 bits (67), Expect = 5.1
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 345 LSEIVKFDTKKLKNNQNNPRPPLKSKEANE 434
++EI KFD KLK + + PL SKE E
Sbjct: 6 MAEIEKFDKSKLKKTETQEKNPLPSKETIE 35
>sp|Q9DET5|TYBN_COTJA Thymosin beta
Length = 45
Score = 30.0 bits (66), Expect = 6.6
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 345 LSEIVKFDTKKLKNNQNNPRPPLKSKEANE 434
LSE+ KFD KKLK + L SKE E
Sbjct: 7 LSEVEKFDKKKLKKTNTEEKNTLPSKETIE 36
>sp|P18758|TYB4_XENLA Thymosin beta-4 (T beta 4) (Thymosin beta 4Xen)
Length = 44
Score = 30.0 bits (66), Expect = 6.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 345 LSEIVKFDTKKLKNNQNNPRPPLKSKEANE 434
++EI KFD KLK + + PL SKE E
Sbjct: 7 MAEIEKFDKAKLKKTETQEKNPLPSKETIE 36
>sp|P33248|TYB12_LATJA Thymosin beta-12
Length = 43
Score = 29.6 bits (65), Expect = 8.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 345 LSEIVKFDTKKLKNNQNNPRPPLKSKEANE 434
+SE+ FD KLK + + PL SKE E
Sbjct: 6 ISEVTSFDKTKLKKTETQEKNPLPSKETIE 35
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,712,229
Number of Sequences: 369166
Number of extensions: 810428
Number of successful extensions: 1994
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1991
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6534486000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)