Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_O12
(935 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O00401|WASL_HUMAN Neural Wiskott-Aldrich syndrome protei... 56 1e-07
sp|Q91YD9|WASL_MOUSE Neural Wiskott-Aldrich syndrome protei... 56 1e-07
sp|Q95107|WASL_BOVIN Neural Wiskott-Aldrich syndrome protei... 56 1e-07
sp|O08816|WASL_RAT Neural Wiskott-Aldrich syndrome protein ... 56 1e-07
sp|P42768|WASP_HUMAN Wiskott-Aldrich syndrome protein (WASp) 54 5e-07
sp|P70315|WASP_MOUSE Wiskott-Aldrich syndrome protein homol... 54 5e-07
sp|Q12599|NOR2_CYLTO Cytochrome P450 55A3 (Cytochrome P450N... 32 3.4
sp|P55308|CATA2_HORVU Catalase isozyme 2 31 4.4
sp|O13731|UBR11_SCHPO Ubiquitin-protein ligase E3 component... 31 4.4
sp|O14604|TYBY_HUMAN Thymosin beta-4, Y-chromosomal 31 5.7
>sp|O00401|WASL_HUMAN Neural Wiskott-Aldrich syndrome protein (N-WASP)
Length = 505
Score = 56.2 bits (134), Expect = 1e-07
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Frame = +2
Query: 44 RKITKNDISIPTNFQHLDHMGL--NDHFFTSENDENLKKYFKGTQF-EHLLEDKNNLKDI 214
+++TK DI P+NFQH+ H+G N F + D LK F E L+D+ K I
Sbjct: 196 KRLTKADIGTPSNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCGISEAQLKDRETSKVI 255
Query: 215 YDFVEKHGGMSKLETEMKQKENKERRAPAIP 307
YDF+EK GG+ ++ E++ R+AP P
Sbjct: 256 YDFIEKTGGVEAVKNELR------RQAPPPP 280
>sp|Q91YD9|WASL_MOUSE Neural Wiskott-Aldrich syndrome protein (N-WASP)
Length = 501
Score = 56.2 bits (134), Expect = 1e-07
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Frame = +2
Query: 44 RKITKNDISIPTNFQHLDHMGL--NDHFFTSENDENLKKYFKGTQF-EHLLEDKNNLKDI 214
+++TK DI P+NFQH+ H+G N F + D LK F E L+D+ K I
Sbjct: 193 KRLTKADIGTPSNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCGISEAQLKDRETSKVI 252
Query: 215 YDFVEKHGGMSKLETEMKQKENKERRAPAIP 307
YDF+EK GG+ ++ E++ R+AP P
Sbjct: 253 YDFIEKTGGVEAVKNELR------RQAPPPP 277
>sp|Q95107|WASL_BOVIN Neural Wiskott-Aldrich syndrome protein (N-WASP)
Length = 505
Score = 56.2 bits (134), Expect = 1e-07
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Frame = +2
Query: 44 RKITKNDISIPTNFQHLDHMGL--NDHFFTSENDENLKKYFKGTQF-EHLLEDKNNLKDI 214
+++TK DI P+NFQH+ H+G N F + D LK F E L+D+ K I
Sbjct: 196 KRLTKADIGTPSNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCGISEAQLKDRETSKVI 255
Query: 215 YDFVEKHGGMSKLETEMKQKENKERRAPAIP 307
YDF+EK GG+ ++ E++ R+AP P
Sbjct: 256 YDFIEKTGGVEAVKNELR------RQAPPPP 280
>sp|O08816|WASL_RAT Neural Wiskott-Aldrich syndrome protein (N-WASP)
Length = 501
Score = 56.2 bits (134), Expect = 1e-07
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Frame = +2
Query: 44 RKITKNDISIPTNFQHLDHMGL--NDHFFTSENDENLKKYFKGTQF-EHLLEDKNNLKDI 214
+++TK DI P+NFQH+ H+G N F + D LK F E L+D+ K I
Sbjct: 193 KRLTKADIGTPSNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCGISEAQLKDRETSKVI 252
Query: 215 YDFVEKHGGMSKLETEMKQKENKERRAPAIP 307
YDF+EK GG+ ++ E++ R+AP P
Sbjct: 253 YDFIEKTGGVEAVKNELR------RQAPPPP 277
>sp|P42768|WASP_HUMAN Wiskott-Aldrich syndrome protein (WASp)
Length = 502
Score = 54.3 bits (129), Expect = 5e-07
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Frame = +2
Query: 35 SGPRKITKNDISIPTNFQHLDHMGLN--DHFFTSENDENLKKYFKGTQF-EHLLEDKNNL 205
SG +KI+K DI P+ F+H+ H+G + + F + D +L+ F E L D
Sbjct: 228 SGKKKISKADIGAPSGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAGISEAQLTDAETS 287
Query: 206 KDIYDFVEKHGGMSKLETEMKQKE 277
K IYDF+E GG+ + EM+++E
Sbjct: 288 KLIYDFIEDQGGLEAVRQEMRRQE 311
>sp|P70315|WASP_MOUSE Wiskott-Aldrich syndrome protein homolog (WASp)
Length = 520
Score = 54.3 bits (129), Expect = 5e-07
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Frame = +2
Query: 35 SGPRKITKNDISIPTNFQHLDHMGLN--DHFFTSENDENLKKYFKGTQF-EHLLEDKNNL 205
SG +KI+K DI P+ F+H+ H+G + + F + D +L+ F E L D
Sbjct: 230 SGKKKISKADIGAPSGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAGISEAQLTDAETS 289
Query: 206 KDIYDFVEKHGGMSKLETEMKQKE 277
K IYDF+E GG+ + EM+++E
Sbjct: 290 KLIYDFIEDQGGLEAVRQEMRRQE 313
>sp|Q12599|NOR2_CYLTO Cytochrome P450 55A3 (Cytochrome P450NOR2)
Length = 408
Score = 31.6 bits (70), Expect = 3.4
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Frame = +2
Query: 32 SSGPRKITKN-----DISIPTNFQHLDHMGLNDHFFTSENDENLKKYFKGTQFEHLLED- 193
S+G + KN D+ P H++ + + FFT ++ ENL+ Y K T + LL D
Sbjct: 79 SAGGKAAAKNKPTFVDMDAPA---HMNQRSMVEPFFTEDHVENLRPYIKET-VQGLLNDM 134
Query: 194 -KNNLKDIYDFVEK 232
N ++ D +EK
Sbjct: 135 VANGCEEPVDLIEK 148
>sp|P55308|CATA2_HORVU Catalase isozyme 2
Length = 494
Score = 31.2 bits (69), Expect = 4.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 20 HHAYSSGPRKITKNDISIPTNFQHLDHMGLNDHFFTS 130
HH S +D+ IPT+++H+D G+N + F S
Sbjct: 178 HHPESLHTFFFLFDDVGIPTDYRHMDGFGVNTYTFVS 214
>sp|O13731|UBR11_SCHPO Ubiquitin-protein ligase E3 component N-recognin-11
(N-end-recognizing protein 11)
Length = 2052
Score = 31.2 bits (69), Expect = 4.4
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +2
Query: 173 FEHLLEDKNNLKDIYDFVEKHGGMSKLETE-MKQKENKERRA--PAIPKNT 316
F+H L+D N++ D+ DF + + L E M+ +EN+ A P + +NT
Sbjct: 435 FDHPLDDDNDVNDLLDFETEREDIDDLTDEVMETEENEAAEADYPGVNRNT 485
>sp|O14604|TYBY_HUMAN Thymosin beta-4, Y-chromosomal
Length = 44
Score = 30.8 bits (68), Expect = 5.7
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 551 LSEIVKFDTKKLKNNQNNPRPPLKSKEANE 640
++EI KFD KLK + + PL SKE E
Sbjct: 7 MAEIEKFDKSKLKKTETQEKNPLSSKETIE 36
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,476,049
Number of Sequences: 369166
Number of extensions: 1301272
Number of successful extensions: 3681
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3672
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9654860130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)