DrC_00729
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00729 (348 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P02399|RLA2_ARTSA 60S acidic ribosomal protein P2 (EL12) 74 1e-13 sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha ... 64 1e-10 sp|O61463|RLA2_CRYST 60S acidic ribosomal protein P2 64 1e-10 sp|Q9C3Z5|RLA2_PODAN 60S acidic ribosomal protein P2 64 1e-10 sp|P42038|RLA3_CLAHE 60S acidic ribosomal protein P2 (Aller... 62 5e-10 sp|P05389|RLA2_DROME 60S acidic ribosomal protein P2 (Acidi... 62 5e-10 sp|Q9UUZ6|RLA2_ASPFU 60S acidic ribosomal protein P2 (Aller... 61 9e-10 sp|P42039|RLA4_CLAHE 60S acidic ribosomal protein P2 (Minor... 60 1e-09 sp|P05387|RLA2_HUMAN 60S acidic ribosomal protein P2 59 3e-09 sp|P17478|RLA4_SCHPO 60S acidic ribosomal protein P2-beta (A4) 59 3e-09
>sp|P02399|RLA2_ARTSA 60S acidic ribosomal protein P2 (EL12) Length = 111 Score = 73.6 bits (179), Expect = 1e-13 Identities = 44/110 (40%), Positives = 59/110 (53%), Gaps = 1/110 (0%) Frame = +1 Query: 1 YISAYMLYLLSGKT-PKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKL 177 Y++AY+L LSG P ADIE ILSSVG+EC+ + + ++ N +K + +E+LI G +KL Sbjct: 3 YVAAYLLAALSGNADPSTADIEKILSSVGIECNPSQLQKVMNELKGKDLEALIAEGQTKL 62 Query: 178 ASVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 327 AS+PTGG DE DMGFGLFD Sbjct: 63 ASMPTGGAPAAAAGGAATAPAAEAKEAKKEEKKEESEEEDE-DMGFGLFD 111
>sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha (A2) (L40C) (L12EI) Length = 110 Score = 63.9 bits (154), Expect = 1e-10 Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 1/110 (0%) Frame = +1 Query: 1 YISAYMLYLLSGK-TPKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKL 177 Y++AY+L + GK +P +DIE++LS+VG+E + + L N + + I+ LI AG KL Sbjct: 3 YLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKL 62 Query: 178 ASVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 327 A+VPTGG + DMGFGLFD Sbjct: 63 ATVPTGG--AASAAPAAAAGGAAPAAEEAAKEEAKEEEESDEDMGFGLFD 110
>sp|O61463|RLA2_CRYST 60S acidic ribosomal protein P2 Length = 110 Score = 63.9 bits (154), Expect = 1e-10 Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 1/110 (0%) Frame = +1 Query: 1 YISAYMLYLLSG-KTPKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKL 177 Y++AYML L G + P +D++ IL SVG+E +K+ +T++ N +K ++++ +I G KL Sbjct: 3 YVAAYMLATLGGNEKPSESDLKKILDSVGIEVEKDQLTKVINELKGKNLDEVIAEGEKKL 62 Query: 178 ASVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 327 ASVP+GG D DMGFGLFD Sbjct: 63 ASVPSGGGVAAAAPAAGGGGADPAEAKEEKKEEPEEESDD--DMGFGLFD 110
>sp|Q9C3Z5|RLA2_PODAN 60S acidic ribosomal protein P2 Length = 111 Score = 63.9 bits (154), Expect = 1e-10 Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 1/110 (0%) Frame = +1 Query: 1 YISAYMLYLLSGK-TPKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKL 177 +++AY+L L GK TP AD++ +L SVG+E D + + +L + ++ + + LI G SKL Sbjct: 3 HLAAYLLLTLGGKATPSAADVKAVLESVGIEADSDRLDKLISELEGKDVNELIAEGSSKL 62 Query: 178 ASVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 327 ASVP+GG D+ DMGFGLFD Sbjct: 63 ASVPSGGAGGAAAAGGAAAAGGAAEAAPEEAKEEEKEESDD-DMGFGLFD 111
>sp|P42038|RLA3_CLAHE 60S acidic ribosomal protein P2 (Allergen Cla h 3) (Cla h III) Length = 111 Score = 61.6 bits (148), Expect = 5e-10 Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 1/110 (0%) Frame = +1 Query: 1 YISAYMLYLLSGKT-PKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKL 177 Y++AY+L L+G + P DI+ +LSSVG++ D+ ++ L ++ + I LI++G KL Sbjct: 3 YMAAYLLLGLAGNSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSQKL 62 Query: 178 ASVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 327 ASVP+GG D+ DMGFGLFD Sbjct: 63 ASVPSGGSGAAPSAGGAAAAGGATEAAPEAAKEEEKEESDD-DMGFGLFD 111
>sp|P05389|RLA2_DROME 60S acidic ribosomal protein P2 (Acidic ribosomal protein RPA1) Length = 113 Score = 61.6 bits (148), Expect = 5e-10 Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 1/67 (1%) Frame = +1 Query: 1 YISAYMLYLLSGK-TPKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKL 177 Y++AY+L +L GK +P +D+E ILSSVGVE D +T++ + +SI+ LI G KL Sbjct: 3 YVAAYLLAVLGGKDSPANSDLEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGREKL 62 Query: 178 ASVPTGG 198 +S+P GG Sbjct: 63 SSMPVGG 69
>sp|Q9UUZ6|RLA2_ASPFU 60S acidic ribosomal protein P2 (Allergen Asp f 8) Length = 111 Score = 60.8 bits (146), Expect = 9e-10 Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 1/110 (0%) Frame = +1 Query: 1 YISAYMLYLLSGKT-PKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKL 177 Y++A++L L+G T P D++ +LSSVG++ D+ + +L ++ + ++ LI G +KL Sbjct: 3 YLAAFLLLALAGNTSPSSEDVKAVLSSVGIDADEERLNKLIAELEGKDLQELIAEGSTKL 62 Query: 178 ASVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 327 ASVP+GG DE DMGFGLFD Sbjct: 63 ASVPSGGAAAAAPAAAGAAAGGAAAPAAKEKNEEEKEESDE-DMGFGLFD 111
>sp|P42039|RLA4_CLAHE 60S acidic ribosomal protein P2 (Minor allergen Cla h 4) (Cla h IV) Length = 111 Score = 60.5 bits (145), Expect = 1e-09 Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 1/110 (0%) Frame = +1 Query: 1 YISAYMLYLLSGKT-PKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKL 177 Y++A++L L+G + P DI+ +LSSVG++ D+ ++ L ++ + I LI++G KL Sbjct: 3 YLAAFLLLGLAGNSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSEKL 62 Query: 178 ASVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 327 ASVP+GG D+ DMGFGLFD Sbjct: 63 ASVPSGGAGAASAGGAAAAGGAAEAAPEAERAEEEKEESDD-DMGFGLFD 111
>sp|P05387|RLA2_HUMAN 60S acidic ribosomal protein P2 Length = 115 Score = 58.9 bits (141), Expect = 3e-09 Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 4/113 (3%) Frame = +1 Query: 1 YISAYMLYLLSGKT-PKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKL 177 Y+++Y+L L G + P DI+ IL SVG+E D + + ++ + + ++IE +I GI KL Sbjct: 3 YVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKL 62 Query: 178 ASVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDE---GDMGFGLFD 327 ASVP GG E DMGFGLFD Sbjct: 63 ASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD 115
>sp|P17478|RLA4_SCHPO 60S acidic ribosomal protein P2-beta (A4) Length = 110 Score = 58.9 bits (141), Expect = 3e-09 Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 1/110 (0%) Frame = +1 Query: 1 YISAYMLYLLSGK-TPKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKL 177 Y++AY+L + GK +P +DIE++LS+VG+E + V L + + ++IE LI AG KL Sbjct: 3 YLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKL 62 Query: 178 ASVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 327 ++VP+ G + DMGFGLFD Sbjct: 63 STVPSAG--AVATPAAGGAAGAEATSAAEEAKEEEAAEESDEDMGFGLFD 110
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,379,886
Number of Sequences: 369166
Number of extensions: 263354
Number of successful extensions: 922
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 68,354,980
effective HSP length: 83
effective length of database: 53,021,975
effective search space used: 1696703200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
