Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_I18
(244 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P02399|RLA2_ARTSA 60S acidic ribosomal protein P2 (EL12) 37 0.014
sp|O61463|RLA2_CRYST 60S acidic ribosomal protein P2 34 0.12
sp|P42038|RLA3_CLAHE 60S acidic ribosomal protein P2 (Aller... 33 0.16
sp|P42039|RLA4_CLAHE 60S acidic ribosomal protein P2 (Minor... 33 0.16
sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha ... 33 0.20
sp|Q9C3Z5|RLA2_PODAN 60S acidic ribosomal protein P2 33 0.27
sp|Q9UUZ6|RLA2_ASPFU 60S acidic ribosomal protein P2 (Aller... 32 0.35
sp|Q29315|RLA2_PIG 60S acidic ribosomal protein P2 32 0.59
sp|P05387|RLA2_HUMAN 60S acidic ribosomal protein P2 31 0.78
sp|P99027|RLA2_MOUSE 60S acidic ribosomal protein P2 31 1.0
>sp|P02399|RLA2_ARTSA 60S acidic ribosomal protein P2 (EL12)
Length = 111
Score = 37.0 bits (84), Expect = 0.014
Identities = 24/72 (33%), Positives = 32/72 (44%)
Frame = +2
Query: 8 ELFNAIKEQSIESLINAGISKLASVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 187
++ N +K + +E+LI G +KLAS+PTGG
Sbjct: 41 KVMNELKGKDLEALIAEGQTKLASMPTGGAPAAAAGGAATAPAAEAKEAKKEEKKEESEE 100
Query: 188 XDEGDMGFGLFD 223
DE DMGFGLFD
Sbjct: 101 EDE-DMGFGLFD 111
>sp|O61463|RLA2_CRYST 60S acidic ribosomal protein P2
Length = 110
Score = 33.9 bits (76), Expect = 0.12
Identities = 22/74 (29%), Positives = 32/74 (43%)
Frame = +2
Query: 2 VTELFNAIKEQSIESLINAGISKLASVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 181
+T++ N +K ++++ +I G KLASVP+GG
Sbjct: 39 LTKVINELKGKNLDEVIAEGEKKLASVPSGGGVAAAAPAAGGGGADPAEAKEEKKEEPEE 98
Query: 182 XXXDEGDMGFGLFD 223
D DMGFGLFD
Sbjct: 99 ESDD--DMGFGLFD 110
>sp|P42038|RLA3_CLAHE 60S acidic ribosomal protein P2 (Allergen Cla h 3) (Cla h III)
Length = 111
Score = 33.5 bits (75), Expect = 0.16
Identities = 22/74 (29%), Positives = 31/74 (41%)
Frame = +2
Query: 2 VTELFNAIKEQSIESLINAGISKLASVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 181
++ L ++ + I LI++G KLASVP+GG
Sbjct: 39 LSSLLKELEGKDINELISSGSQKLASVPSGGSGAAPSAGGAAAAGGATEAAPEAAKEEEK 98
Query: 182 XXXDEGDMGFGLFD 223
D+ DMGFGLFD
Sbjct: 99 EESDD-DMGFGLFD 111
>sp|P42039|RLA4_CLAHE 60S acidic ribosomal protein P2 (Minor allergen Cla h 4) (Cla h IV)
Length = 111
Score = 33.5 bits (75), Expect = 0.16
Identities = 22/74 (29%), Positives = 31/74 (41%)
Frame = +2
Query: 2 VTELFNAIKEQSIESLINAGISKLASVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 181
++ L ++ + I LI++G KLASVP+GG
Sbjct: 39 LSSLLKELEGKDINELISSGSEKLASVPSGGAGAASAGGAAAAGGAAEAAPEAERAEEEK 98
Query: 182 XXXDEGDMGFGLFD 223
D+ DMGFGLFD
Sbjct: 99 EESDD-DMGFGLFD 111
>sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha (A2) (L40C) (L12EI)
Length = 110
Score = 33.1 bits (74), Expect = 0.20
Identities = 23/74 (31%), Positives = 29/74 (39%)
Frame = +2
Query: 2 VTELFNAIKEQSIESLINAGISKLASVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 181
+ L N + + I+ LI AG KLA+VPTGG
Sbjct: 39 IETLINELNGKDIDELIAAGNEKLATVPTGG--AASAAPAAAAGGAAPAAEEAAKEEAKE 96
Query: 182 XXXDEGDMGFGLFD 223
+ DMGFGLFD
Sbjct: 97 EEESDEDMGFGLFD 110
>sp|Q9C3Z5|RLA2_PODAN 60S acidic ribosomal protein P2
Length = 111
Score = 32.7 bits (73), Expect = 0.27
Identities = 22/72 (30%), Positives = 30/72 (41%)
Frame = +2
Query: 8 ELFNAIKEQSIESLINAGISKLASVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 187
+L + ++ + + LI G SKLASVP+GG
Sbjct: 41 KLISELEGKDVNELIAEGSSKLASVPSGGAGGAAAAGGAAAAGGAAEAAPEEAKEEEKEE 100
Query: 188 XDEGDMGFGLFD 223
D+ DMGFGLFD
Sbjct: 101 SDD-DMGFGLFD 111
>sp|Q9UUZ6|RLA2_ASPFU 60S acidic ribosomal protein P2 (Allergen Asp f 8)
Length = 111
Score = 32.3 bits (72), Expect = 0.35
Identities = 22/74 (29%), Positives = 31/74 (41%)
Frame = +2
Query: 2 VTELFNAIKEQSIESLINAGISKLASVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 181
+ +L ++ + ++ LI G +KLASVP+GG
Sbjct: 39 LNKLIAELEGKDLQELIAEGSTKLASVPSGGAAAAAPAAAGAAAGGAAAPAAKEKNEEEK 98
Query: 182 XXXDEGDMGFGLFD 223
DE DMGFGLFD
Sbjct: 99 EESDE-DMGFGLFD 111
>sp|Q29315|RLA2_PIG 60S acidic ribosomal protein P2
Length = 115
Score = 31.6 bits (70), Expect = 0.59
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = +2
Query: 2 VTELFNAIKEQSIESLINAGISKLASVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 181
+ ++ + + ++IE +I GI KLASVP+GG
Sbjct: 39 LNKVISELNGKNIEDVIAQGIGKLASVPSGGAXAVAAAPGSXAPAAGSAPAAAEEKKEEK 98
Query: 182 XXXDE---GDMGFGLFD 223
E DMGFGLFD
Sbjct: 99 KEESEESDDDMGFGLFD 115
>sp|P05387|RLA2_HUMAN 60S acidic ribosomal protein P2
Length = 115
Score = 31.2 bits (69), Expect = 0.78
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Frame = +2
Query: 2 VTELFNAIKEQSIESLINAGISKLASVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 181
+ ++ + + ++IE +I GI KLASVP GG
Sbjct: 39 LNKVISELNGKNIEDVIAQGIGKLASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEK 98
Query: 182 XXXDE---GDMGFGLFD 223
E DMGFGLFD
Sbjct: 99 KEESEESDDDMGFGLFD 115
>sp|P99027|RLA2_MOUSE 60S acidic ribosomal protein P2
Length = 115
Score = 30.8 bits (68), Expect = 1.0
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Frame = +2
Query: 2 VTELFNAIKEQSIESLINAGISKLASVPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 181
+ ++ + + ++IE +I G+ KLASVP GG
Sbjct: 39 LNKVISELNGKNIEDVIAQGVGKLASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEK 98
Query: 182 XXXDE---GDMGFGLFD 223
E DMGFGLFD
Sbjct: 99 KEESEESDDDMGFGLFD 115
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,284,229
Number of Sequences: 369166
Number of extensions: 83403
Number of successful extensions: 280
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 68,354,980
effective HSP length: 51
effective length of database: 58,933,495
effective search space used: 1709071355
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)