Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_N11
(301 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P02399|RLA2_ARTSA 60S acidic ribosomal protein P2 (EL12) 61 9e-10
sp|P42038|RLA3_CLAHE 60S acidic ribosomal protein P2 (Aller... 52 5e-07
sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha ... 52 5e-07
sp|O61463|RLA2_CRYST 60S acidic ribosomal protein P2 52 5e-07
sp|P42039|RLA4_CLAHE 60S acidic ribosomal protein P2 (Minor... 52 5e-07
sp|Q9C3Z5|RLA2_PODAN 60S acidic ribosomal protein P2 51 9e-07
sp|Q9UUZ6|RLA2_ASPFU 60S acidic ribosomal protein P2 (Aller... 49 3e-06
sp|P05387|RLA2_HUMAN 60S acidic ribosomal protein P2 49 4e-06
sp|P99027|RLA2_MOUSE 60S acidic ribosomal protein P2 49 5e-06
sp|P42899|RLA2_BOVIN 60S acidic ribosomal protein P2 49 5e-06
>sp|P02399|RLA2_ARTSA 60S acidic ribosomal protein P2 (EL12)
Length = 111
Score = 60.8 bits (146), Expect = 9e-10
Identities = 36/92 (39%), Positives = 48/92 (52%)
Frame = +2
Query: 5 ADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVPTGGXXXXXXXXXXX 184
ADIE ILSSVG+EC+ + + ++ N +K + +E+LI G +KLAS+PTGG
Sbjct: 21 ADIEKILSSVGIECNPSQLQKVMNELKGKDLEALIAEGQTKLASMPTGGAPAAAAGGAAT 80
Query: 185 XXXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 280
DE DMGFGLFD
Sbjct: 81 APAAEAKEAKKEEKKEESEEEDE-DMGFGLFD 111
>sp|P42038|RLA3_CLAHE 60S acidic ribosomal protein P2 (Allergen Cla h 3) (Cla h III)
Length = 111
Score = 51.6 bits (122), Expect = 5e-07
Identities = 30/91 (32%), Positives = 44/91 (48%)
Frame = +2
Query: 8 DIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVPTGGXXXXXXXXXXXX 187
DI+ +LSSVG++ D+ ++ L ++ + I LI++G KLASVP+GG
Sbjct: 22 DIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSQKLASVPSGGSGAAPSAGGAAA 81
Query: 188 XXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 280
D+ DMGFGLFD
Sbjct: 82 AGGATEAAPEAAKEEEKEESDD-DMGFGLFD 111
>sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha (A2) (L40C) (L12EI)
Length = 110
Score = 51.6 bits (122), Expect = 5e-07
Identities = 31/92 (33%), Positives = 43/92 (46%)
Frame = +2
Query: 5 ADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVPTGGXXXXXXXXXXX 184
+DIE++LS+VG+E + + L N + + I+ LI AG KLA+VPTGG
Sbjct: 21 SDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVPTGG--AASAAPAAA 78
Query: 185 XXXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 280
+ DMGFGLFD
Sbjct: 79 AGGAAPAAEEAAKEEAKEEEESDEDMGFGLFD 110
>sp|O61463|RLA2_CRYST 60S acidic ribosomal protein P2
Length = 110
Score = 51.6 bits (122), Expect = 5e-07
Identities = 30/92 (32%), Positives = 46/92 (50%)
Frame = +2
Query: 5 ADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVPTGGXXXXXXXXXXX 184
+D++ IL SVG+E +K+ +T++ N +K ++++ +I G KLASVP+GG
Sbjct: 21 SDLKKILDSVGIEVEKDQLTKVINELKGKNLDEVIAEGEKKLASVPSGGGVAAAAPAAGG 80
Query: 185 XXXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 280
D DMGFGLFD
Sbjct: 81 GGADPAEAKEEKKEEPEEESDD--DMGFGLFD 110
>sp|P42039|RLA4_CLAHE 60S acidic ribosomal protein P2 (Minor allergen Cla h 4) (Cla h IV)
Length = 111
Score = 51.6 bits (122), Expect = 5e-07
Identities = 30/91 (32%), Positives = 44/91 (48%)
Frame = +2
Query: 8 DIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVPTGGXXXXXXXXXXXX 187
DI+ +LSSVG++ D+ ++ L ++ + I LI++G KLASVP+GG
Sbjct: 22 DIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSEKLASVPSGGAGAASAGGAAAA 81
Query: 188 XXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 280
D+ DMGFGLFD
Sbjct: 82 GGAAEAAPEAERAEEEKEESDD-DMGFGLFD 111
>sp|Q9C3Z5|RLA2_PODAN 60S acidic ribosomal protein P2
Length = 111
Score = 50.8 bits (120), Expect = 9e-07
Identities = 30/92 (32%), Positives = 44/92 (47%)
Frame = +2
Query: 5 ADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVPTGGXXXXXXXXXXX 184
AD++ +L SVG+E D + + +L + ++ + + LI G SKLASVP+GG
Sbjct: 21 ADVKAVLESVGIEADSDRLDKLISELEGKDVNELIAEGSSKLASVPSGGAGGAAAAGGAA 80
Query: 185 XXXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 280
D+ DMGFGLFD
Sbjct: 81 AAGGAAEAAPEEAKEEEKEESDD-DMGFGLFD 111
>sp|Q9UUZ6|RLA2_ASPFU 60S acidic ribosomal protein P2 (Allergen Asp f 8)
Length = 111
Score = 49.3 bits (116), Expect = 3e-06
Identities = 29/91 (31%), Positives = 44/91 (48%)
Frame = +2
Query: 8 DIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVPTGGXXXXXXXXXXXX 187
D++ +LSSVG++ D+ + +L ++ + ++ LI G +KLASVP+GG
Sbjct: 22 DVKAVLSSVGIDADEERLNKLIAELEGKDLQELIAEGSTKLASVPSGGAAAAAPAAAGAA 81
Query: 188 XXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 280
DE DMGFGLFD
Sbjct: 82 AGGAAAPAAKEKNEEEKEESDE-DMGFGLFD 111
>sp|P05387|RLA2_HUMAN 60S acidic ribosomal protein P2
Length = 115
Score = 48.9 bits (115), Expect = 4e-06
Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Frame = +2
Query: 8 DIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVPTGGXXXXXXXXXXXX 187
DI+ IL SVG+E D + + ++ + + ++IE +I GI KLASVP GG
Sbjct: 22 DIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGGAVAVSAAPGSAA 81
Query: 188 XXXXXXXXXXXXXXXXXXXXDE---GDMGFGLFD 280
E DMGFGLFD
Sbjct: 82 PAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD 115
>sp|P99027|RLA2_MOUSE 60S acidic ribosomal protein P2
Length = 115
Score = 48.5 bits (114), Expect = 5e-06
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Frame = +2
Query: 8 DIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVPTGGXXXXXXXXXXXX 187
DI+ IL SVG+E D + + ++ + + ++IE +I G+ KLASVP GG
Sbjct: 22 DIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGVGKLASVPAGGAVAVSAAPGSAA 81
Query: 188 XXXXXXXXXXXXXXXXXXXXDE---GDMGFGLFD 280
E DMGFGLFD
Sbjct: 82 PAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD 115
>sp|P42899|RLA2_BOVIN 60S acidic ribosomal protein P2
Length = 115
Score = 48.5 bits (114), Expect = 5e-06
Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Frame = +2
Query: 8 DIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVPTGGXXXXXXXXXXXX 187
DI+ IL SVG+E D + + ++ + + ++IE +I GI KLASVP GG
Sbjct: 22 DIKKILDSVGIEADDDRLNKVISELHGKNIEDVIAQGIGKLASVPAGGAVAVSAAPGSAA 81
Query: 188 XXXXXXXXXXXXXXXXXXXXDE---GDMGFGLFD 280
E DMGFGLFD
Sbjct: 82 PAAGSAPAAAEEKKEEKKEESEESDDDMGFGLFD 115
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,114,608
Number of Sequences: 369166
Number of extensions: 152846
Number of successful extensions: 634
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1668247950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)