Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_D20
(330 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P02399|RLA2_ARTSA 60S acidic ribosomal protein P2 (EL12) 64 8e-11
sp|Q9C3Z5|RLA2_PODAN 60S acidic ribosomal protein P2 57 1e-08
sp|P42038|RLA3_CLAHE 60S acidic ribosomal protein P2 (Aller... 55 4e-08
sp|P42039|RLA4_CLAHE 60S acidic ribosomal protein P2 (Minor... 55 4e-08
sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha ... 55 5e-08
sp|O61463|RLA2_CRYST 60S acidic ribosomal protein P2 54 1e-07
sp|Q9UUZ6|RLA2_ASPFU 60S acidic ribosomal protein P2 (Aller... 54 1e-07
sp|P05389|RLA2_DROME 60S acidic ribosomal protein P2 (Acidi... 52 3e-07
sp|P42037|RLA2_ALTAL 60S acidic ribosomal protein P2 (Minor... 52 4e-07
sp|P05387|RLA2_HUMAN 60S acidic ribosomal protein P2 52 5e-07
>sp|P02399|RLA2_ARTSA 60S acidic ribosomal protein P2 (EL12)
Length = 111
Score = 64.3 bits (155), Expect = 8e-11
Identities = 41/104 (39%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Frame = +1
Query: 1 LYLLSGKT-PKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVPTG 177
L LSG P ADIE ILSSVG+EC+ + + ++ N +K + +E+LI G +KLAS+PTG
Sbjct: 9 LAALSGNADPSTADIEKILSSVGIECNPSQLQKVMNELKGKDLEALIAEGQTKLASMPTG 68
Query: 178 GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 309
G DE DMGFGLFD
Sbjct: 69 GAPAAAAGGAATAPAAEAKEAKKEEKKEESEEEDE-DMGFGLFD 111
>sp|Q9C3Z5|RLA2_PODAN 60S acidic ribosomal protein P2
Length = 111
Score = 57.0 bits (136), Expect = 1e-08
Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Frame = +1
Query: 1 LYLLSGK-TPKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVPTG 177
L L GK TP AD++ +L SVG+E D + + +L + ++ + + LI G SKLASVP+G
Sbjct: 9 LLTLGGKATPSAADVKAVLESVGIEADSDRLDKLISELEGKDVNELIAEGSSKLASVPSG 68
Query: 178 GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 309
G D+ DMGFGLFD
Sbjct: 69 GAGGAAAAGGAAAAGGAAEAAPEEAKEEEKEESDD-DMGFGLFD 111
>sp|P42038|RLA3_CLAHE 60S acidic ribosomal protein P2 (Allergen Cla h 3) (Cla h III)
Length = 111
Score = 55.5 bits (132), Expect = 4e-08
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Frame = +1
Query: 4 YLLSG----KTPKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVP 171
YLL G +P DI+ +LSSVG++ D+ ++ L ++ + I LI++G KLASVP
Sbjct: 7 YLLLGLAGNSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSQKLASVP 66
Query: 172 TGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 309
+GG D+ DMGFGLFD
Sbjct: 67 SGGSGAAPSAGGAAAAGGATEAAPEAAKEEEKEESDD-DMGFGLFD 111
>sp|P42039|RLA4_CLAHE 60S acidic ribosomal protein P2 (Minor allergen Cla h 4) (Cla h IV)
Length = 111
Score = 55.5 bits (132), Expect = 4e-08
Identities = 33/103 (32%), Positives = 48/103 (46%)
Frame = +1
Query: 1 LYLLSGKTPKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVPTGG 180
L L +P DI+ +LSSVG++ D+ ++ L ++ + I LI++G KLASVP+GG
Sbjct: 10 LGLAGNSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSEKLASVPSGG 69
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 309
D+ DMGFGLFD
Sbjct: 70 AGAASAGGAAAAGGAAEAAPEAERAEEEKEESDD-DMGFGLFD 111
>sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha (A2) (L40C) (L12EI)
Length = 110
Score = 55.1 bits (131), Expect = 5e-08
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Frame = +1
Query: 1 LYLLSGK-TPKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVPTG 177
L + GK +P +DIE++LS+VG+E + + L N + + I+ LI AG KLA+VPTG
Sbjct: 9 LLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVPTG 68
Query: 178 GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 309
G + DMGFGLFD
Sbjct: 69 G--AASAAPAAAAGGAAPAAEEAAKEEAKEEEESDEDMGFGLFD 110
>sp|O61463|RLA2_CRYST 60S acidic ribosomal protein P2
Length = 110
Score = 53.9 bits (128), Expect = 1e-07
Identities = 31/95 (32%), Positives = 47/95 (49%)
Frame = +1
Query: 25 PKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVPTGGXXXXXXXX 204
P +D++ IL SVG+E +K+ +T++ N +K ++++ +I G KLASVP+GG
Sbjct: 18 PSESDLKKILDSVGIEVEKDQLTKVINELKGKNLDEVIAEGEKKLASVPSGGGVAAAAPA 77
Query: 205 XXXXXXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 309
D DMGFGLFD
Sbjct: 78 AGGGGADPAEAKEEKKEEPEEESDD--DMGFGLFD 110
>sp|Q9UUZ6|RLA2_ASPFU 60S acidic ribosomal protein P2 (Allergen Asp f 8)
Length = 111
Score = 53.5 bits (127), Expect = 1e-07
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Frame = +1
Query: 1 LYLLSGKT-PKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVPTG 177
L L+G T P D++ +LSSVG++ D+ + +L ++ + ++ LI G +KLASVP+G
Sbjct: 9 LLALAGNTSPSSEDVKAVLSSVGIDADEERLNKLIAELEGKDLQELIAEGSTKLASVPSG 68
Query: 178 GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 309
G DE DMGFGLFD
Sbjct: 69 GAAAAAPAAAGAAAGGAAAPAAKEKNEEEKEESDE-DMGFGLFD 111
>sp|P05389|RLA2_DROME 60S acidic ribosomal protein P2 (Acidic ribosomal protein RPA1)
Length = 113
Score = 52.4 bits (124), Expect = 3e-07
Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +1
Query: 1 LYLLSGK-TPKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVPTG 177
L +L GK +P +D+E ILSSVGVE D +T++ + +SI+ LI G KL+S+P G
Sbjct: 9 LAVLGGKDSPANSDLEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGREKLSSMPVG 68
Query: 178 G 180
G
Sbjct: 69 G 69
>sp|P42037|RLA2_ALTAL 60S acidic ribosomal protein P2 (Minor allergen Alt a 6) (Alt a VI)
Length = 113
Score = 52.0 bits (123), Expect = 4e-07
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Frame = +1
Query: 4 YLLSG----KTPKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVP 171
YLL G +P AD++ +L SVG+E D + + +L + ++ + I LI +G KLASVP
Sbjct: 7 YLLLGLGGNTSPSAADVKAVLESVGIEADSDRLDKLISELEGKDINELIASGSEKLASVP 66
Query: 172 TGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-EGDMGFGLFD 309
+GG + + DMGFGLFD
Sbjct: 67 SGGAGGAAASGGAAAAGGSAQAEAAPEAAKEEEKEESDEDMGFGLFD 113
>sp|P05387|RLA2_HUMAN 60S acidic ribosomal protein P2
Length = 115
Score = 51.6 bits (122), Expect = 5e-07
Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 7/109 (6%)
Frame = +1
Query: 4 YLLSG----KTPKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVP 171
YLL+ +P DI+ IL SVG+E D + + ++ + + ++IE +I GI KLASVP
Sbjct: 7 YLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVP 66
Query: 172 TGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDE---GDMGFGLFD 309
GG E DMGFGLFD
Sbjct: 67 AGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD 115
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,696,988
Number of Sequences: 369166
Number of extensions: 217301
Number of successful extensions: 841
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 68,354,980
effective HSP length: 78
effective length of database: 53,945,650
effective search space used: 1672315150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)