Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_N22
(337 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P02399|RLA2_ARTSA 60S acidic ribosomal protein P2 (EL12) 68 8e-12
sp|Q9C3Z5|RLA2_PODAN 60S acidic ribosomal protein P2 60 1e-09
sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha ... 59 5e-09
sp|O61463|RLA2_CRYST 60S acidic ribosomal protein P2 58 6e-09
sp|P42038|RLA3_CLAHE 60S acidic ribosomal protein P2 (Aller... 57 2e-08
sp|P42039|RLA4_CLAHE 60S acidic ribosomal protein P2 (Minor... 56 2e-08
sp|P05389|RLA2_DROME 60S acidic ribosomal protein P2 (Acidi... 56 3e-08
sp|Q9UUZ6|RLA2_ASPFU 60S acidic ribosomal protein P2 (Aller... 55 4e-08
sp|Q9SLF7|RLA2A_ARATH 60S acidic ribosomal protein P2-A 55 5e-08
sp|P42037|RLA2_ALTAL 60S acidic ribosomal protein P2 (Minor... 55 7e-08
>sp|P02399|RLA2_ARTSA 60S acidic ribosomal protein P2 (EL12)
Length = 111
Score = 67.8 bits (164), Expect = 8e-12
Identities = 42/106 (39%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Frame = +2
Query: 2 YMLYLLSGKT-PKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVP 178
Y+L LSG P ADIE ILSSVG+EC+ + + ++ N +K + +E+LI G +KLAS+P
Sbjct: 7 YLLAALSGNADPSTADIEKILSSVGIECNPSQLQKVMNELKGKDLEALIAEGQTKLASMP 66
Query: 179 TGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 316
TGG DE DMGFGLFD
Sbjct: 67 TGGAPAAAAGGAATAPAAEAKEAKKEEKKEESEEEDE-DMGFGLFD 111
>sp|Q9C3Z5|RLA2_PODAN 60S acidic ribosomal protein P2
Length = 111
Score = 60.5 bits (145), Expect = 1e-09
Identities = 37/106 (34%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Frame = +2
Query: 2 YMLYLLSGK-TPKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVP 178
Y+L L GK TP AD++ +L SVG+E D + + +L + ++ + + LI G SKLASVP
Sbjct: 7 YLLLTLGGKATPSAADVKAVLESVGIEADSDRLDKLISELEGKDVNELIAEGSSKLASVP 66
Query: 179 TGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 316
+GG D+ DMGFGLFD
Sbjct: 67 SGGAGGAAAAGGAAAAGGAAEAAPEEAKEEEKEESDD-DMGFGLFD 111
>sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha (A2) (L40C) (L12EI)
Length = 110
Score = 58.5 bits (140), Expect = 5e-09
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Frame = +2
Query: 2 YMLYLLSGK-TPKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVP 178
Y+L + GK +P +DIE++LS+VG+E + + L N + + I+ LI AG KLA+VP
Sbjct: 7 YLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVP 66
Query: 179 TGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 316
TGG + DMGFGLFD
Sbjct: 67 TGG--AASAAPAAAAGGAAPAAEEAAKEEAKEEEESDEDMGFGLFD 110
>sp|O61463|RLA2_CRYST 60S acidic ribosomal protein P2
Length = 110
Score = 58.2 bits (139), Expect = 6e-09
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Frame = +2
Query: 2 YMLYLLSG-KTPKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVP 178
YML L G + P +D++ IL SVG+E +K+ +T++ N +K ++++ +I G KLASVP
Sbjct: 7 YMLATLGGNEKPSESDLKKILDSVGIEVEKDQLTKVINELKGKNLDEVIAEGEKKLASVP 66
Query: 179 TGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 316
+GG D DMGFGLFD
Sbjct: 67 SGGGVAAAAPAAGGGGADPAEAKEEKKEEPEEESDD--DMGFGLFD 110
>sp|P42038|RLA3_CLAHE 60S acidic ribosomal protein P2 (Allergen Cla h 3) (Cla h III)
Length = 111
Score = 56.6 bits (135), Expect = 2e-08
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Frame = +2
Query: 2 YMLYLLSGKT-PKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVP 178
Y+L L+G + P DI+ +LSSVG++ D+ ++ L ++ + I LI++G KLASVP
Sbjct: 7 YLLLGLAGNSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSQKLASVP 66
Query: 179 TGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 316
+GG D+ DMGFGLFD
Sbjct: 67 SGGSGAAPSAGGAAAAGGATEAAPEAAKEEEKEESDD-DMGFGLFD 111
>sp|P42039|RLA4_CLAHE 60S acidic ribosomal protein P2 (Minor allergen Cla h 4) (Cla h IV)
Length = 111
Score = 56.2 bits (134), Expect = 2e-08
Identities = 33/104 (31%), Positives = 49/104 (47%)
Frame = +2
Query: 5 MLYLLSGKTPKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVPTG 184
+L L +P DI+ +LSSVG++ D+ ++ L ++ + I LI++G KLASVP+G
Sbjct: 9 LLGLAGNSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSEKLASVPSG 68
Query: 185 GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 316
G D+ DMGFGLFD
Sbjct: 69 GAGAASAGGAAAAGGAAEAAPEAERAEEEKEESDD-DMGFGLFD 111
>sp|P05389|RLA2_DROME 60S acidic ribosomal protein P2 (Acidic ribosomal protein RPA1)
Length = 113
Score = 55.8 bits (133), Expect = 3e-08
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Frame = +2
Query: 2 YMLYLLSGK-TPKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVP 178
Y+L +L GK +P +D+E ILSSVGVE D +T++ + +SI+ LI G KL+S+P
Sbjct: 7 YLLAVLGGKDSPANSDLEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGREKLSSMP 66
Query: 179 TGG 187
GG
Sbjct: 67 VGG 69
>sp|Q9UUZ6|RLA2_ASPFU 60S acidic ribosomal protein P2 (Allergen Asp f 8)
Length = 111
Score = 55.5 bits (132), Expect = 4e-08
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Frame = +2
Query: 2 YMLYLLSGKT-PKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVP 178
++L L+G T P D++ +LSSVG++ D+ + +L ++ + ++ LI G +KLASVP
Sbjct: 7 FLLLALAGNTSPSSEDVKAVLSSVGIDADEERLNKLIAELEGKDLQELIAEGSTKLASVP 66
Query: 179 TGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGDMGFGLFD 316
+GG DE DMGFGLFD
Sbjct: 67 SGGAAAAAPAAAGAAAGGAAAPAAKEKNEEEKEESDE-DMGFGLFD 111
>sp|Q9SLF7|RLA2A_ARATH 60S acidic ribosomal protein P2-A
Length = 115
Score = 55.1 bits (131), Expect = 5e-08
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Frame = +2
Query: 2 YMLYLLSGK-TPKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVP 178
Y+L +LSGK +P ADI+ IL SVG E + + + L +K + + LI AG KLASVP
Sbjct: 7 YLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVP 66
Query: 179 TGG 187
+GG
Sbjct: 67 SGG 69
>sp|P42037|RLA2_ALTAL 60S acidic ribosomal protein P2 (Minor allergen Alt a 6) (Alt a VI)
Length = 113
Score = 54.7 bits (130), Expect = 7e-08
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Frame = +2
Query: 2 YMLYLLSGKT-PKPADIENILSSVGVECDKNAVTELFNAIKEQSIESLINAGISKLASVP 178
Y+L L G T P AD++ +L SVG+E D + + +L + ++ + I LI +G KLASVP
Sbjct: 7 YLLLGLGGNTSPSAADVKAVLESVGIEADSDRLDKLISELEGKDINELIASGSEKLASVP 66
Query: 179 TGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-EGDMGFGLFD 316
+GG + + DMGFGLFD
Sbjct: 67 SGGAGGAAASGGAAAAGGSAQAEAAPEAAKEEEKEESDEDMGFGLFD 113
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,936,540
Number of Sequences: 369166
Number of extensions: 237493
Number of successful extensions: 878
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 68,354,980
effective HSP length: 79
effective length of database: 53,760,915
effective search space used: 1720349280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)