Planaria EST Database

DrC_00682

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00682
         (831 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8XPA2|GLGB1_CLOPE  1,4-alpha-glucan branching enzyme 1 (...    34   0.43 
sp|P26192|VP3_ROTPC  Inner core protein VP3                        32   2.8  
sp|P56146|SYFA_HELPY  Phenylalanyl-tRNA synthetase alpha cha...    31   4.8  

>sp|Q8XPA2|GLGB1_CLOPE 1,4-alpha-glucan branching enzyme 1 (Glycogen branching enzyme 1)
           (BE 1) (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase 1)
          Length = 674

 Score = 34.3 bits (77), Expect = 0.43
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +2

Query: 107 DDKPPFKSLNEHEEKFFTELQEKLYREELIRCHQFRYGSQYNPMNIEPFHFDRE 268
           DDK   K +   +EK+ T+L+ K++ E+ +  + F  G  YN  N    HF  E
Sbjct: 8   DDKLEIKPVRLRKEKYKTQLKNKIFNEDDL--YLFHEGRNYNAYNFMGAHFTSE 59

>sp|P26192|VP3_ROTPC Inner core protein VP3
          Length = 692

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
 Frame = +2

Query: 317 YLEDLVMSSNEPVKNINVYPINFFRRIYTKPFHMFFDAIEP--IIGKHYSGIFRSSI--- 481
           Y E+  + SN+    I +Y  +       K F +      P  +I K + GIF SS    
Sbjct: 29  YHENAFLISNQVATTIIIYLSDTIVNEVDKAFTLLNSNGIPALVIRKDHIGIFTSSNFTY 88

Query: 482 ---HKVVFFFGAIYYATYKLKFGDTDWTHAS 565
              HK+V+F    YY   +    D  W H +
Sbjct: 89  DWQHKIVYFHEYTYYKNNEFIVSDEFWLHTN 119

>sp|P56146|SYFA_HELPY Phenylalanyl-tRNA synthetase alpha chain (Phenylalanine--tRNA
           ligase alpha chain) (PheRS)
          Length = 328

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 33/146 (22%), Positives = 54/146 (36%), Gaps = 9/146 (6%)
 Frame = +2

Query: 101 KSDDKPPFKSLNEHEEKFFTELQEKLYREELIRCHQFRYGSQYNPMNIEPFHFDRERLSG 280
           K+    P         +FFT L  KL    L+    F     ++ +N+ P+H  R+    
Sbjct: 94  KTSSSHPLNYTKNKIIEFFTPLGYKLEIGSLVE-DDFH---NFSALNLPPYHPARDMQDT 149

Query: 281 AYTEQDRLLRKQYLEDLVMSSNEPVKNINVYPI-NFFRRIYTKPFHMFFDAIEPII---- 445
            Y +  +LLR       + +  E    I +  +   FRR Y       F  IE ++    
Sbjct: 150 FYFKDHKLLRTHTSPVQIHTMQEQTPPIKMICLGETFRRDYDLTHTPMFHQIEGLVVDQK 209

Query: 446 ----GKHYSGIFRSSIHKVVFFFGAI 511
                 H  G+    +H   +FFG +
Sbjct: 210 GNIRFTHLKGVIEDFLH---YFFGGV 232

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,426,059
Number of Sequences: 369166
Number of extensions: 1628232
Number of successful extensions: 3913
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3913
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8052550455
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00682

  1. Dr_sW_017_O14
  2. Dr_sW_008_G05
  3. Dr_sW_026_L16
  4. Dr_sW_002_F22
  5. Dr_sW_011_L05
  6. Dr_sW_024_H13
  7. Dr_sW_014_K20