Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_F22
(772 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8XPA2|GLGB1_CLOPE 1,4-alpha-glucan branching enzyme 1 (... 34 0.38
sp|P26192|VP3_ROTPC Inner core protein VP3 32 2.5
sp|P56146|SYFA_HELPY Phenylalanyl-tRNA synthetase alpha cha... 32 2.5
sp|P02662|CAS1_BOVIN Alpha-S1-casein precursor 30 5.6
sp|P51136|GSK3H_DICDI Glycogen synthase kinase-3 homolog (G... 30 9.5
>sp|Q8XPA2|GLGB1_CLOPE 1,4-alpha-glucan branching enzyme 1 (Glycogen branching enzyme 1)
(BE 1) (1,4-alpha-D-glucan:1,4-alpha-D-glucan
6-glucosyl-transferase 1)
Length = 674
Score = 34.3 bits (77), Expect = 0.38
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +1
Query: 49 DDKPPFKSLNEHEEKFFTELQEKLYREELIRCHQFRYGSQYNPMNIEPFHFDRE 210
DDK K + +EK+ T+L+ K++ E+ + + F G YN N HF E
Sbjct: 8 DDKLEIKPVRLRKEKYKTQLKNKIFNEDDL--YLFHEGRNYNAYNFMGAHFTSE 59
>sp|P26192|VP3_ROTPC Inner core protein VP3
Length = 692
Score = 31.6 bits (70), Expect = 2.5
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Frame = +1
Query: 259 YLEDLVMSSNEPVKNINVYPINFFRRIYTKPFHMFFDAIEP--IIGKHYSGIFRSSI--- 423
Y E+ + SN+ I +Y + K F + P +I K + GIF SS
Sbjct: 29 YHENAFLISNQVATTIIIYLSDTIVNEVDKAFTLLNSNGIPALVIRKDHIGIFTSSNFTY 88
Query: 424 ---HKVVFFFGAIYYATYKLKFGDTDWTHAS 507
HK+V+F YY + D W H +
Sbjct: 89 DWQHKIVYFHEYTYYKNNEFIVSDEFWLHTN 119
>sp|P56146|SYFA_HELPY Phenylalanyl-tRNA synthetase alpha chain (Phenylalanine--tRNA
ligase alpha chain) (PheRS)
Length = 328
Score = 31.6 bits (70), Expect = 2.5
Identities = 37/153 (24%), Positives = 58/153 (37%), Gaps = 10/153 (6%)
Frame = +1
Query: 25 VSLIMA-KSDDKPPFKSLNEHEEKFFTELQEKLYREELIRCHQFRYGSQYNPMNIEPFHF 201
VSL A K+ P +FFT L KL L+ F ++ +N+ P+H
Sbjct: 87 VSLFNAIKTSSSHPLNYTKNKIIEFFTPLGYKLEIGSLVE-DDFH---NFSALNLPPYHP 142
Query: 202 DRERLSGAYTEQDRLLRKQYLEDLVMSSNEPVKNINVYPI-NFFRRIYTKPFHMFFDAIE 378
R+ Y + +LLR + + E I + + FRR Y F IE
Sbjct: 143 ARDMQDTFYFKDHKLLRTHTSPVQIHTMQEQTPPIKMICLGETFRRDYDLTHTPMFHQIE 202
Query: 379 PII--------GKHYSGIFRSSIHKVVFFFGAI 453
++ H G+ +H +FFG +
Sbjct: 203 GLVVDQKGNIRFTHLKGVIEDFLH---YFFGGV 232
>sp|P02662|CAS1_BOVIN Alpha-S1-casein precursor
Length = 214
Score = 30.4 bits (67), Expect = 5.6
Identities = 34/167 (20%), Positives = 65/167 (38%), Gaps = 8/167 (4%)
Frame = +1
Query: 10 INNNLVSLIMAKSDDKPPFKSLNEHEEKFFTELQEKLYREEL--IRCHQFRYGSQYNPMN 183
+N NL+ +A + + +NE + +E E E++ + + P +
Sbjct: 31 LNENLLRFFVAPFPEVFGKEKVNELSKDIGSESTEDQAMEDIKQMEAESISSSEEIVPNS 90
Query: 184 IEPFHFDRERLSGAYTEQDRLLRKQYLEDLVMSSNEPVKNINVYPINFFRRIYTKPFHMF 363
+E H +E + +R L YLE L+ V + + P + R+++ +
Sbjct: 91 VEQKHIQKEDVPS-----ERYLG--YLEQLLRLKKYKVPQLEIVPNSAEERLHSMKEGIH 143
Query: 364 FDAIEPIIGKH------YSGIFRSSIHKVVFFFGAIYYATYKLKFGD 486
EP+IG + Y +FR + GA YY ++ D
Sbjct: 144 AQQKEPMIGVNQELAYFYPELFRQFYQLDAYPSGAWYYVPLGTQYTD 190
>sp|P51136|GSK3H_DICDI Glycogen synthase kinase-3 homolog (GSK-3)
Length = 467
Score = 29.6 bits (65), Expect = 9.5
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 571 VMTKQTADFDDRDFSKRTVLKDVVKTSTMISTPRDK*FRKLLMKSGN*CFV 723
++ K + DD K T +S+ S PR F K+++KS C++
Sbjct: 7 ILEKDKKETDDNGNKKTTTTTSSSSSSSSSSKPRSNKFDKVIIKSNGVCYI 57
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,012,537
Number of Sequences: 369166
Number of extensions: 1583937
Number of successful extensions: 3973
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3973
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7163732800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)