Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_L16
(628 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P26192|VP3_ROTPC Inner core protein VP3 32 1.7
sp|P51136|GSK3H_DICDI Glycogen synthase kinase-3 homolog (G... 30 6.6
>sp|P26192|VP3_ROTPC Inner core protein VP3
Length = 692
Score = 31.6 bits (70), Expect = 1.7
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Frame = +1
Query: 115 YLEDLVMSSNEPVKNINVYPINFFRRIYTKPFHMFFDAIEP--IIGKHYSGIFRSSI--- 279
Y E+ + SN+ I +Y + K F + P +I K + GIF SS
Sbjct: 29 YHENAFLISNQVATTIIIYLSDTIVNEVDKAFTLLNSNGIPALVIRKDHIGIFTSSNFTY 88
Query: 280 ---HKVVFFFGAIYYATYKLKFGDTDWTHAS 363
HK+V+F YY + D W H +
Sbjct: 89 DWQHKIVYFHEYTYYKNNEFIVSDEFWLHTN 119
>sp|P51136|GSK3H_DICDI Glycogen synthase kinase-3 homolog (GSK-3)
Length = 467
Score = 29.6 bits (65), Expect = 6.6
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 427 VMTKQTADFDDRDFSKRTVLKDVVKTSTMISTPRDK*FRKLLMKSGN*CFV 579
++ K + DD K T +S+ S PR F K+++KS C++
Sbjct: 7 ILEKDKKETDDNGNKKTTTTTSSSSSSSSSSKPRSNKFDKVIIKSNGVCYI 57
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,016,679
Number of Sequences: 369166
Number of extensions: 1278161
Number of successful extensions: 3006
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3006
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4974853140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)