Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_L05
(383 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51136|GSK3H_DICDI Glycogen synthase kinase-3 homolog (G... 30 2.2
sp|P76513|YFDQ_ECOLI Hypothetical protein yfdQ 28 5.0
sp|Q8YSI2|PROB_ANASP Glutamate 5-kinase (Gamma-glutamyl kin... 28 5.0
sp|P15963|VP74_NPVAC Protein p74 28 6.5
sp|Q9Z5D7|BCHJ_RHOSH Bacteriochlorophyll synthase 23 kDa ch... 28 6.5
sp|P32434|CWG2_SCHPO Type I protein geranylgeranyltransfera... 28 8.5
sp|Q5Y4Y8|T2R66_PANPA Taste receptor type 2 member 66 (T2R66) 28 8.5
sp|Q646E1|T2R46_PANPA Taste receptor type 2 member 46 (T2R46) 28 8.5
sp|Q16927|VIT1_AEDAE Vitellogenin A1 precursor (VG) (PVG1) ... 28 8.5
>sp|P51136|GSK3H_DICDI Glycogen synthase kinase-3 homolog (GSK-3)
Length = 467
Score = 29.6 bits (65), Expect = 2.2
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +2
Query: 182 VMTKQTADFDDRDFSKRTVLKDVVKTSTMISTPRDK*FRKLLMKSGN*CFV 334
++ K + DD K T +S+ S PR F K+++KS C++
Sbjct: 7 ILEKDKKETDDNGNKKTTTTTSSSSSSSSSSKPRSNKFDKVIIKSNGVCYI 57
>sp|P76513|YFDQ_ECOLI Hypothetical protein yfdQ
Length = 274
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 170 RDPAVMTKQTADFDDRDFSKRTVLKDVVKTST 265
R + QTADF+D DFS + L + V+ T
Sbjct: 166 RKITIEANQTADFEDNDFSGKRSLMESVEAKT 197
>sp|Q8YSI2|PROB_ANASP Glutamate 5-kinase (Gamma-glutamyl kinase) (GK)
Length = 378
Score = 28.5 bits (62), Expect = 5.0
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 15/60 (25%)
Frame = +2
Query: 71 ATYKLKFGDTD-------------WTHASSGYNKVYNMRPRQFPDSRDPAVMT--KQTAD 205
A +LKFGD D W + +++Y+ PR PD+R +++T K+ AD
Sbjct: 148 AVDELKFGDNDTLSALVASLVEADWLFLLTDVDRLYSADPRSVPDARPISLVTSIKELAD 207
>sp|P15963|VP74_NPVAC Protein p74
Length = 645
Score = 28.1 bits (61), Expect = 6.5
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 122 GYNKVYNMRPRQFPDSRDPAVMTKQTADFDDRDFSKRTVLKDVVK-TSTMISTPRDK*FR 298
GYN NM PR+FPD +T FD+ + R +++ + + S M+ T D F
Sbjct: 461 GYN---NMFpreFPDDMSRTFLTAYFESFDNT--TSREIIEFMPEFFSEMVETDDDATFE 515
Query: 299 KL 304
L
Sbjct: 516 SL 517
>sp|Q9Z5D7|BCHJ_RHOSH Bacteriochlorophyll synthase 23 kDa chain (4-vinyl reductase)
Length = 206
Score = 28.1 bits (61), Expect = 6.5
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +2
Query: 50 FFGAIYYATYKLKFGDTDWTHASSGYNKVYNMRPRQFPDSRDPAV 184
F GA AT K WT A SG +V + RP F +R+P V
Sbjct: 112 FLGARVLATAIAKHS---WTFAGSGKFRVVSGRPLSFEIARNPVV 153
>sp|P32434|CWG2_SCHPO Type I protein geranylgeranyltransferase beta subunit (Type I
protein geranyl-geranyltransferase beta subunit)
(GGTase-I-beta) (PGGT)
Length = 355
Score = 27.7 bits (60), Expect = 8.5
Identities = 21/59 (35%), Positives = 28/59 (47%)
Frame = +2
Query: 110 HASSGYNKVYNMRPRQFPDSRDPAVMTKQTADFDDRDFSKRTVLKDVVKTSTMISTPRD 286
HA G++K P +FPD A+ A DD+ F K V D+ TS I+ RD
Sbjct: 295 HALGGFSKT----PGEFPDVLHSALGLYAMAYQDDKSFPK--VNADIHMTSKYINICRD 347
>sp|Q5Y4Y8|T2R66_PANPA Taste receptor type 2 member 66 (T2R66)
Length = 309
Score = 27.7 bits (60), Expect = 8.5
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -3
Query: 309 INNFLNYLSLGVDIIVLVLTTSFRTVLLLKSRSSKSAVCFVITAG 175
IN+F N+L+ + I L+ +F ++ L+ + +V VI G
Sbjct: 91 INHFSNWLATSLSIFYLLKIANFSNLIFLRLKRRVKSVVLVILLG 135
>sp|Q646E1|T2R46_PANPA Taste receptor type 2 member 46 (T2R46)
Length = 309
Score = 27.7 bits (60), Expect = 8.5
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -3
Query: 309 INNFLNYLSLGVDIIVLVLTTSFRTVLLLKSRSSKSAVCFVITAG 175
IN+F N+L+ + I L+ +F ++ L+ + +V VI G
Sbjct: 91 INHFSNWLATSLSIFYLLKIANFSNLIFLRLKRRVKSVVLVILLG 135
>sp|Q16927|VIT1_AEDAE Vitellogenin A1 precursor (VG) (PVG1) [Contains: Vitellin light
chain (VL); Vitellin heavy chain (VH)]
Length = 2148
Score = 27.7 bits (60), Expect = 8.5
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +2
Query: 122 GYNKVYNMRPRQFPDSRDPAVMTKQTADFDDRDFSKR----TVLKDVV 253
GY +Y + + F ++ +Q A F D+ FSKR L+D V
Sbjct: 636 GYEDIYELAQKYFVSQKE-----RQVAQFSDKKFSKRVDAWVTLRDAV 678
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,399,182
Number of Sequences: 369166
Number of extensions: 706278
Number of successful extensions: 1720
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1720
length of database: 68,354,980
effective HSP length: 94
effective length of database: 50,989,890
effective search space used: 1682666370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)