Planarian EST Database

DrC_00624

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00624 TTCCAATAGATGTGTTGTACCTGTATGTGTCAGTCAAGTTAAAGTGCCAGAATCAGTTGA AAATGAATTTGAATATATTTTTAATGCTACTTTATCTAATTTTATTAAACAAATATCATG CTTAACGGTTAAAGCGAAAGATATTTTTGATGAATTAGCCGTGTCATTAACAAATATTGT AGATCGCAGTTTAATTTTAGAAAATAAAATTGATCAGCTTACTGAACAAATTAAAATGAA TGATTCTTCAGTTTTACAGCCCCTTGTTAACCAGCAGACTGAAGTTTATAAAATTCATTT AAGTCGTGACGATGAAAGATTTGTTCAAATGGAAATGCCTGATTGTATTCGAGAAATATT TGATAAAGCTGAACCACCTCCGGATTTATTTAAATTCGATGAATTTAGAAAAGAAGAAGG AGACAGTTTAAAATATTATACTGATCCAGAATTTTTTCTACGAGAGTGGCTTAAAAATGT TCGGGTAGATAAAAAGAAGAAAAAAGAGAAAAAGAAAAGGAAATCAGTTGCTAAACCTAA AGATAATTTTCCGGCTTTCCCTCCTCCACCAATTGTAACTCAAGTTCCACAAGAACATGA ACCAGATGAATGTATCACAAATTACAACTTTGGTGATGTATCTGTTTATGAAGATCCACG CAGCTATAATAAACCAAAAGTAGAAGAGCAAATTGTTACAAACCATGAAATAAAATTAGA GCCTGAAAATGATAATGTACCACCTCCTCCACTTCCACCACCGCCGCCACCACCTCCAGC ACCATTGTCAATTCCGACACTTAATCCAGCACTTTCAAAACCGGAACCTCGTGCTATTCC TGAACCTGATTCAATTCAAAATTTATTAAGAGCTATTCAACAAGGTACTACTTTGAAACC AGTTACCGCACAAAAAGAAGCTAAACGAAAGACAATGGATTTCCGGGCCATGATAGCTGA ATTACGACCAGCATGGGATAATATTTCTGAATCAGACGAAAGTGAAGAAGATTAACTTTG ACTTTATATTTATTACTGCTCAATTTTATACTTATATTTTTACTTTATAATTTTTAAAGG TTATCATTTTTTTTAGAATAGAATTGTATCTTTTGAATAACTATATATAATTTTGTTAC

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00624
         (1139 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8VHI6|WASF3_MOUSE  Wiskott-Aldrich syndrome protein fami...    82   4e-15
sp|Q9UPY6|WASF3_HUMAN  Wiskott-Aldrich syndrome protein fami...    81   6e-15
sp|Q9Y6W5|WASF2_HUMAN  Wiskott-Aldrich syndrome protein fami...    72   4e-12
sp|Q8IV90|WASF4_HUMAN  Wiskott-Aldrich syndrome protein fami...    70   9e-12
sp|Q92558|WASF1_HUMAN  Wiskott-Aldrich syndrome protein fami...    70   1e-11
sp|Q8R5H6|WASF1_MOUSE  Wiskott-Aldrich syndrome protein fami...    70   1e-11
sp|Q8BH43|WASF2_MOUSE  Wiskott-Aldrich syndrome protein fami...    64   6e-10
sp|P15935|BCNA_CLOPE  Bacteriocin uviA                             34   0.68 
sp|Q90339|MYSS_CYPCA  Myosin heavy chain, fast skeletal muscle     32   3.4  
sp|O42184|REST_CHICK  Restin (Cytoplasmic linker protein 170...    32   4.4

>sp|Q8VHI6|WASF3_MOUSE Wiskott-Aldrich syndrome protein family member 3 (WASP-family
           protein member 3) (WAVE-3 protein)
          Length = 501

 Score = 81.6 bits (200), Expect = 4e-15
 Identities = 44/149 (29%), Positives = 83/149 (55%), Gaps = 2/149 (1%)
 Frame = +2

Query: 50  ESVENEFEYIFNATLSNFIKQISCLTVKAKDIFDELAVSLTNIVDRSLILENKIDQLTEQ 229
           E V +E E + N+TL+  I+Q+S L+  A+DIF EL     N   R+  L+++ID+L  +
Sbjct: 20  EGVTSELECVTNSTLAAIIRQLSSLSKHAEDIFGELFNEANNFYIRANSLQDRIDRLAVK 79

Query: 230 IKMNDSSVLQPLVN--QQTEVYKIHLSRDDERFVQMEMPDCIREIFDKAEPPPDLFKFDE 403
           +   DS+V +  +      + +K    +D +   +  +P+ + +I+++++ PP L     
Sbjct: 80  VTQLDSTVEEVSLQDINMKKAFKSSTIQDQQVVSKNSIPNPVADIYNQSDKPPPLSILTP 139

Query: 404 FRKEEGDSLKYYTDPEFFLREWLKNVRVD 490
           +R ++ D LK+YTDP +F   W + +  D
Sbjct: 140 YRDDKKDGLKFYTDPSYFFDLWKEKMLQD 168


 Score = 31.6 bits (70), Expect = 4.4
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +2

Query: 818 KPEPRAIPEPDSIQNLLRAIQQGTTLKPVTAQKEAKRK 931
           +PEP   P  D+  +LL AI+ G  LK V  Q+E + K
Sbjct: 428 RPEPAQPPISDARSDLLAAIRMGIQLKKVQEQREQEAK 465

>sp|Q9UPY6|WASF3_HUMAN Wiskott-Aldrich syndrome protein family member 3 (WASP-family
           protein member 3) (WAVE-3 protein) (Verprolin homology
           domain-containing protein 3)
          Length = 502

 Score = 80.9 bits (198), Expect = 6e-15
 Identities = 43/149 (28%), Positives = 83/149 (55%), Gaps = 2/149 (1%)
 Frame = +2

Query: 50  ESVENEFEYIFNATLSNFIKQISCLTVKAKDIFDELAVSLTNIVDRSLILENKIDQLTEQ 229
           E + +E E + N+TL+  I+Q+S L+  A+DIF EL     N   R+  L+++ID+L  +
Sbjct: 20  EGITSELECVTNSTLAAIIRQLSSLSKHAEDIFGELFNEANNFYIRANSLQDRIDRLAVK 79

Query: 230 IKMNDSSVLQPLVN--QQTEVYKIHLSRDDERFVQMEMPDCIREIFDKAEPPPDLFKFDE 403
           +   DS+V +  +      + +K    +D +   +  +P+ + +I+++++ PP L     
Sbjct: 80  VTQLDSTVEEVSLQDINMKKAFKSSTVQDQQVVSKNSIPNPVADIYNQSDKPPPLNILTP 139

Query: 404 FRKEEGDSLKYYTDPEFFLREWLKNVRVD 490
           +R ++ D LK+YTDP +F   W + +  D
Sbjct: 140 YRDDKKDGLKFYTDPSYFFDLWKEKMLQD 168

>sp|Q9Y6W5|WASF2_HUMAN Wiskott-Aldrich syndrome protein family member 2 (WASP-family
           protein member 2) (WAVE-2 protein) (Verprolin homology
           domain-containing protein 2)
          Length = 498

 Score = 71.6 bits (174), Expect = 4e-12
 Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 4/150 (2%)
 Frame = +2

Query: 53  SVENEFEYIFNATLSNFIKQISCLTVKAKDIFDELAVSLTNIVDRSLILENKIDQLTEQI 232
           SV +E E + N TL+N I+Q+  L+  A+DIF EL         R   L  ++D+L  Q+
Sbjct: 20  SVRSELECVTNITLANVIRQLGSLSKYAEDIFGELFTQANTFASRVSSLAERVDRL--QV 77

Query: 233 KMNDSSVLQPLVNQQ----TEVYKIHLSRDDERFVQMEMPDCIREIFDKAEPPPDLFKFD 400
           K+      +  V+ Q     + ++    +D + F +  +P  + E ++  + PP L    
Sbjct: 78  KVTQLDPKEEEVSLQGINTRKAFRSSTIQDQKLFDRNSLPVPVLETYNTCDTPPPLNNLT 137

Query: 401 EFRKEEGDSLKYYTDPEFFLREWLKNVRVD 490
            +R +  ++LK+YTDP +F   W + +  D
Sbjct: 138 PYRDDGKEALKFYTDPSYFFDLWKEKMLQD 167

>sp|Q8IV90|WASF4_HUMAN Wiskott-Aldrich syndrome protein family member 4 (WASP-family
           protein member 4)
          Length = 625

 Score = 70.5 bits (171), Expect = 9e-12
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 3/149 (2%)
 Frame = +2

Query: 53  SVENEFEYIFNATLSNFIKQISCLTVKAKDIFDELAVSLTNIVDRSLILENKIDQL---T 223
           SV +E E + N TL+N I+Q+  L+  A+DIF EL             L  ++D L    
Sbjct: 148 SVRSELECVTNITLANVIRQLGSLSKYAEDIFGELFTQANTFASPVSSLAERVDGLQVKV 207

Query: 224 EQIKMNDSSVLQPLVNQQTEVYKIHLSRDDERFVQMEMPDCIREIFDKAEPPPDLFKFDE 403
            Q+   +  V   ++N + + ++    +D + F +  +P  + E ++  + PP L     
Sbjct: 208 TQLDPKEEEVSLQVINTR-KAFRSSTIQDQKLFDRNSLPVPVLETYNTCDTPPPLNNLTP 266

Query: 404 FRKEEGDSLKYYTDPEFFLREWLKNVRVD 490
           +R +  ++LK+YTDP +F   W K +  D
Sbjct: 267 YRDDGTEALKFYTDPSYFFDLWKKKMLQD 295

>sp|Q92558|WASF1_HUMAN Wiskott-Aldrich syndrome protein family member 1 (WASP-family
           protein member 1) (WAVE-1 protein) (Verprolin homology
           domain-containing protein 1)
          Length = 559

 Score = 70.1 bits (170), Expect = 1e-11
 Identities = 40/147 (27%), Positives = 76/147 (51%), Gaps = 2/147 (1%)
 Frame = +2

Query: 56  VENEFEYIFNATLSNFIKQISCLTVKAKDIFDELAVSLTNIVDRSLILENKIDQLTEQIK 235
           ++NE E + N +L+N I+Q+S L+  A+DIF EL     +   R   L+ ++D+L+  + 
Sbjct: 22  IKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAHSFSFRVNSLQERVDRLSVSVT 81

Query: 236 MNDSSVLQPLVNQQT--EVYKIHLSRDDERFVQMEMPDCIREIFDKAEPPPDLFKFDEFR 409
             D    +  +   T  + ++    +D + F +  +P  ++E +D  E PP L     +R
Sbjct: 82  QLDPKEEELSLQDITMRKAFRSSTIQDQQLFDRKTLPIPLQETYDVCEQPPPLNILTPYR 141

Query: 410 KEEGDSLKYYTDPEFFLREWLKNVRVD 490
            +  + LK+YT+P +F   W + +  D
Sbjct: 142 DDGKEGLKFYTNPSYFFDLWKEKMLQD 168

>sp|Q8R5H6|WASF1_MOUSE Wiskott-Aldrich syndrome protein family member 1 (WASP-family
           protein member 1) (WAVE-1 protein)
          Length = 559

 Score = 70.1 bits (170), Expect = 1e-11
 Identities = 40/147 (27%), Positives = 76/147 (51%), Gaps = 2/147 (1%)
 Frame = +2

Query: 56  VENEFEYIFNATLSNFIKQISCLTVKAKDIFDELAVSLTNIVDRSLILENKIDQLTEQIK 235
           ++NE E + N +L+N I+Q+S L+  A+DIF EL     +   R   L+ ++D+L+  + 
Sbjct: 22  IKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAHSFSFRVNSLQERVDRLSVSVT 81

Query: 236 MNDSSVLQPLVNQQT--EVYKIHLSRDDERFVQMEMPDCIREIFDKAEPPPDLFKFDEFR 409
             D    +  +   T  + ++    +D + F +  +P  ++E +D  E PP L     +R
Sbjct: 82  QLDPKEEELSLQDITMRKAFRSSTIQDQQLFDRKTLPIPLQETYDVCEQPPPLNILTPYR 141

Query: 410 KEEGDSLKYYTDPEFFLREWLKNVRVD 490
            +  + LK+YT+P +F   W + +  D
Sbjct: 142 DDGKEGLKFYTNPSYFFDLWKEKMLQD 168

>sp|Q8BH43|WASF2_MOUSE Wiskott-Aldrich syndrome protein family member 2 (WASP-family
           protein member 2) (WAVE-2 protein)
          Length = 497

 Score = 64.3 bits (155), Expect = 6e-10
 Identities = 37/147 (25%), Positives = 74/147 (50%), Gaps = 4/147 (2%)
 Frame = +2

Query: 62  NEFEYIFNATLSNFIKQISCLTVKAKDIFDELAVSLTNIVDRSLILENKIDQLTEQIKMN 241
           +E E   N TL+N I+Q+  L+  A+DIF E+    +    R   L  ++D++  Q+K+ 
Sbjct: 23  SELECRTNITLANVIRQLGSLSKYAEDIFGEICTQASAFASRVNSLAERVDRV--QVKVT 80

Query: 242 DSSVLQPLVNQQ----TEVYKIHLSRDDERFVQMEMPDCIREIFDKAEPPPDLFKFDEFR 409
                +  V+ Q     + ++   ++D + F +  +P  + E ++  + PP L     +R
Sbjct: 81  QLDPKEEEVSLQGINTRKAFRSSTTQDQKLFDRNSLPVPVLETYNSCDAPPPLNNLSPYR 140

Query: 410 KEEGDSLKYYTDPEFFLREWLKNVRVD 490
            +  ++LK+YT+P +F   W + +  D
Sbjct: 141 DDGKEALKFYTNPSYFFDLWKEKMLQD 167

>sp|P15935|BCNA_CLOPE Bacteriocin uviA
          Length = 185

 Score = 34.3 bits (77), Expect = 0.68
 Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 1/135 (0%)
 Frame = +2

Query: 50  ESVENEFEYIFNATLSNFIKQISCLTVKAKDIFDELAVSLTNIVDRSLILENKIDQLTEQ 229
           E + N FE + N    +F+K+I   +   +D   +L VSL NIV++  I   + +   E 
Sbjct: 20  EYIINRFEILINKYKMSFLKEIHFNSYDIEDNKQDLIVSLINIVNKIPIDNPQFE--NEG 77

Query: 230 IKMNDSSVLQPLVNQQTEVYKIHLSRDDER-FVQMEMPDCIREIFDKAEPPPDLFKFDEF 406
             +N   + + ++N + ++Y   ++++ +R F++ +    + E  DK      L K+ E 
Sbjct: 78  CLVN--YIYKSILNSRKDMY---INKNIKRYFIESQSLSSMVEFKDK-----PLVKYIES 127

Query: 407 RKEEGDSLKYYTDPE 451
             E  D LK  T+ E
Sbjct: 128 NIEIEDMLKCLTEKE 142

>sp|Q90339|MYSS_CYPCA Myosin heavy chain, fast skeletal muscle
          Length = 1935

 Score = 32.0 bits (71), Expect = 3.4
 Identities = 27/112 (24%), Positives = 50/112 (44%)
 Frame = +2

Query: 50   ESVENEFEYIFNATLSNFIKQISCLTVKAKDIFDELAVSLTNIVDRSLILENKIDQLTEQ 229
            E +E+E E     T      +  C  +K KDI D+L ++L  +       ENK+  LTE+
Sbjct: 925  ERLEDEEEINAELTAKKRKLEDECSELK-KDI-DDLELTLAKVEKEKHATENKVKNLTEE 982

Query: 230  IKMNDSSVLQPLVNQQTEVYKIHLSRDDERFVQMEMPDCIREIFDKAEPPPD 385
            +   D S+ + L  ++  + + H    D+   + +  + + +   K E   D
Sbjct: 983  MASQDESIAK-LTKEKKALQEAHQQTLDDLQAEEDKVNTLTKAKTKLEQQVD 1033

>sp|O42184|REST_CHICK Restin (Cytoplasmic linker protein 170) (CLIP-170)
          Length = 1433

 Score = 31.6 bits (70), Expect = 4.4
 Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 9/73 (12%)
 Frame = +2

Query: 95  SNFIKQISCLTVKAKDIFDE-------LAVSLTNIVDRSLI-LENKIDQLTE-QIKMNDS 247
           S  +K+I  L  K  ++ +E       L   L ++ D+ L+ +E+ +++L E +IK+ + 
Sbjct: 676 SQHLKEIEALKAKLLEVTEEKEQTLENLKAKLESVEDQHLVEMEDTLNKLQEAEIKVKEL 735

Query: 248 SVLQPLVNQQTEV 286
            VLQ   N+QT++
Sbjct: 736 DVLQAKCNEQTKL 748

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,910,557
Number of Sequences: 369166
Number of extensions: 1493329
Number of successful extensions: 3905
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3901
length of database: 68,354,980
effective HSP length: 112
effective length of database: 47,664,660
effective search space used: 12726464220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00624

Planaria EST Database

DrC_00624

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail