Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_N15
(739 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8VHI6|WASF3_MOUSE Wiskott-Aldrich syndrome protein fami... 32 1.8
sp|Q8IV90|WASF4_HUMAN Wiskott-Aldrich syndrome protein fami... 32 1.8
sp|Q9UPY6|WASF3_HUMAN Wiskott-Aldrich syndrome protein fami... 32 2.3
sp|Q9Y6W5|WASF2_HUMAN Wiskott-Aldrich syndrome protein fami... 30 5.1
>sp|Q8VHI6|WASF3_MOUSE Wiskott-Aldrich syndrome protein family member 3 (WASP-family
protein member 3) (WAVE-3 protein)
Length = 501
Score = 32.0 bits (71), Expect = 1.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 3 PDLFKFDEFRKEEGDSLKYYTDPEFFLREWLKNVRVD 113
P L +R ++ D LK+YTDP +F W + + D
Sbjct: 132 PPLSILTPYRDDKKDGLKFYTDPSYFFDLWKEKMLQD 168
Score = 31.6 bits (70), Expect = 2.3
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +3
Query: 441 KPEPRAIPEPDSIQNLLRAIQQGTTLKPVTAQKEAKRK 554
+PEP P D+ +LL AI+ G LK V Q+E + K
Sbjct: 428 RPEPAQPPISDARSDLLAAIRMGIQLKKVQEQREQEAK 465
>sp|Q8IV90|WASF4_HUMAN Wiskott-Aldrich syndrome protein family member 4 (WASP-family
protein member 4)
Length = 625
Score = 32.0 bits (71), Expect = 1.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 3 PDLFKFDEFRKEEGDSLKYYTDPEFFLREWLKNVRVD 113
P L +R + ++LK+YTDP +F W K + D
Sbjct: 259 PPLNNLTPYRDDGTEALKFYTDPSYFFDLWKKKMLQD 295
>sp|Q9UPY6|WASF3_HUMAN Wiskott-Aldrich syndrome protein family member 3 (WASP-family
protein member 3) (WAVE-3 protein) (Verprolin homology
domain-containing protein 3)
Length = 502
Score = 31.6 bits (70), Expect = 2.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 3 PDLFKFDEFRKEEGDSLKYYTDPEFFLREWLKNVRVD 113
P L +R ++ D LK+YTDP +F W + + D
Sbjct: 132 PPLNILTPYRDDKKDGLKFYTDPSYFFDLWKEKMLQD 168
>sp|Q9Y6W5|WASF2_HUMAN Wiskott-Aldrich syndrome protein family member 2 (WASP-family
protein member 2) (WAVE-2 protein) (Verprolin homology
domain-containing protein 2)
Length = 498
Score = 30.4 bits (67), Expect = 5.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 3 PDLFKFDEFRKEEGDSLKYYTDPEFFLREWLKNVRVD 113
P L +R + ++LK+YTDP +F W + + D
Sbjct: 131 PPLNNLTPYRDDGKEALKFYTDPSYFFDLWKEKMLQD 167
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,673,708
Number of Sequences: 369166
Number of extensions: 851621
Number of successful extensions: 1960
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1960
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6631293200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)