Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_N07
(396 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8VHI6|WASF3_MOUSE Wiskott-Aldrich syndrome protein fami... 32 0.60
sp|Q8NK05|CPK1_CRYNE Mitogen-activated protein kinase CPK1 ... 29 3.9
sp|Q13576|IQGA2_HUMAN Ras GTPase-activating-like protein IQ... 28 5.1
sp|Q7TPV2|DZIP3_MOUSE Ubiquitin ligase protein DZIP3 (DAZ-i... 28 5.1
>sp|Q8VHI6|WASF3_MOUSE Wiskott-Aldrich syndrome protein family member 3 (WASP-family
protein member 3) (WAVE-3 protein)
Length = 501
Score = 31.6 bits (70), Expect = 0.60
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +3
Query: 75 KPEPRAIPEPDSIQNLLRAIQQGTTLKPVTAQKEAKRK 188
+PEP P D+ +LL AI+ G LK V Q+E + K
Sbjct: 428 RPEPAQPPISDARSDLLAAIRMGIQLKKVQEQREQEAK 465
>sp|Q8NK05|CPK1_CRYNE Mitogen-activated protein kinase CPK1 (Stress-activated protein
kinase CPK1)
Length = 366
Score = 28.9 bits (63), Expect = 3.9
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +1
Query: 61 IQHFQNRNLVLFLNLIQFKIY*ELFNKVLL*NQL 162
++HF + N++ L+LIQ + Y E+FN+V L +L
Sbjct: 66 LRHFHHENIISILDLIQPESY-EVFNEVYLVQEL 98
>sp|Q13576|IQGA2_HUMAN Ras GTPase-activating-like protein IQGAP2
Length = 1575
Score = 28.5 bits (62), Expect = 5.1
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +1
Query: 76 NRNLVLFLNLIQFKIY*ELFNKVLL*NQLPHKKKLNERQWISGP**LNYDQHGIIFLNQT 255
N+ L LNL+ KI + N++ L + + H KKLN+++ N D GI L++
Sbjct: 818 NQQLEKDLNLMDIKIGLLVKNRITLEDVISHSKKLNKKKGGEMEILNNTDNQGIKSLSKE 877
Query: 256 KVKKI 270
+ K +
Sbjct: 878 RRKTL 882
>sp|Q7TPV2|DZIP3_MOUSE Ubiquitin ligase protein DZIP3 (DAZ-interacting protein 3 homolog)
Length = 1204
Score = 28.5 bits (62), Expect = 5.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 93 IPEPDSIQNLLRAIQQGTTLKPVTAQK 173
IP P+ IQ +L QQG TL+ +T +
Sbjct: 572 IPVPEIIQRMLSCYQQGITLQSITGSQ 598
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,974,608
Number of Sequences: 369166
Number of extensions: 466800
Number of successful extensions: 1144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 68,354,980
effective HSP length: 97
effective length of database: 50,435,685
effective search space used: 1714813290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)