DrC_00617
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00617 (930 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q15637|SF01_HUMAN Splicing factor 1 (Zinc finger protein... 183 5e-46 sp|Q64213|SF01_MOUSE Splicing factor 1 (Zinc finger protein... 183 5e-46 sp|O01367|HOW_DROME Held out wings protein (KH-domain prote... 77 5e-14 sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppres... 72 2e-12 sp|P42083|YKCA_CAEEL Hypothetical protein B0280.11 in chrom... 64 6e-10 sp|Q60749|SAM68_MOUSE KH domain containing, RNA binding, si... 54 6e-07 sp|Q07666|SAM68_HUMAN KH domain containing, RNA binding, si... 54 6e-07 sp|Q91V33|SAM68_RAT KH domain containing, RNA binding, sign... 54 6e-07 sp|Q8UUW7|SAM68_CHICK KH domain containing, RNA binding, si... 54 6e-07 sp|P13230|GRP33_ARTSA Glycine-rich protein GRP33 42 0.003
>sp|Q15637|SF01_HUMAN Splicing factor 1 (Zinc finger protein 162) (Transcription factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch point binding protein mBBP) (BBP) Length = 639 Score = 183 bits (465), Expect = 5e-46 Identities = 99/194 (51%), Positives = 126/194 (64%), Gaps = 1/194 (0%) Frame = +2 Query: 8 PNNREIDKVFIPQDAHPELNFVGLLIGPRGNTLKSLEKETGAKIIIRXXXXXXXXXXXXX 187 P R DKV IPQD +PE+NFVGLLIGPRGNTLK++EKE AKI+IR Sbjct: 132 PATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRK 191 Query: 188 XXXXXXXEDEPLHAYITAPIRECVDKAIKRINEIIKEGVEVPENQNDLRKSQMKELALLN 367 EDEPLHA +TA E V KA+++I I+K+G+E PE+QNDLRK Q++ELA LN Sbjct: 192 DGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLN 251 Query: 368 GTFREVDGINKLKAIAEAQT-IVTNTIICSLCGGVGHIPSDCKVKRPLNKIESCFSVEKT 544 GT RE D L+ ++T +TNT +C+ CGG GHI SDCK +RP + + +K Sbjct: 252 GTLREDDN-RILRPWQSSETRSITNTTVCTKCGGAGHIASDCKFQRPGDPQS---AQDKA 307 Query: 545 KMDSEYCALMEELG 586 +MD EY +LM ELG Sbjct: 308 RMDKEYLSLMAELG 321
>sp|Q64213|SF01_MOUSE Splicing factor 1 (Zinc finger protein 162) (Transcription factor ZFM1) (mZFM) (Zinc finger gene in MEN1 locus) (Mammalian branch point binding protein mBBP) (BBP) (CW17) Length = 653 Score = 183 bits (465), Expect = 5e-46 Identities = 99/194 (51%), Positives = 126/194 (64%), Gaps = 1/194 (0%) Frame = +2 Query: 8 PNNREIDKVFIPQDAHPELNFVGLLIGPRGNTLKSLEKETGAKIIIRXXXXXXXXXXXXX 187 P R DKV IPQD +PE+NFVGLLIGPRGNTLK++EKE AKI+IR Sbjct: 132 PATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVEEGKVGRK 191 Query: 188 XXXXXXXEDEPLHAYITAPIRECVDKAIKRINEIIKEGVEVPENQNDLRKSQMKELALLN 367 EDEPLHA +TA E V KA+++I I+K+G+E PE+QNDLRK Q++ELA LN Sbjct: 192 DGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLN 251 Query: 368 GTFREVDGINKLKAIAEAQT-IVTNTIICSLCGGVGHIPSDCKVKRPLNKIESCFSVEKT 544 GT RE D L+ ++T +TNT +C+ CGG GHI SDCK +RP + + +K Sbjct: 252 GTLREDDN-RILRPWQSSETRSITNTTVCTKCGGAGHIASDCKFQRPGDPQS---AQDKA 307 Query: 545 KMDSEYCALMEELG 586 +MD EY +LM ELG Sbjct: 308 RMDKEYLSLMAELG 321
>sp|O01367|HOW_DROME Held out wings protein (KH-domain protein KH93F) (Putative RNA-binding protein) (Muscle-specific protein) (Wings held out protein) (Struthio protein) (Quaking-related 93F) Length = 405 Score = 77.4 bits (189), Expect = 5e-14 Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 4/123 (3%) Frame = +2 Query: 26 DKVFIPQDAHPELNFVGLLIGPRGNTLKSLEKETGAKIIIRXXXXXXXXXXXXXXXXXXX 205 +KV++P HP+ NFVG ++GPRG T K LE+ETG KI++R Sbjct: 139 EKVYVPVREHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANRGKPN 198 Query: 206 XE--DEPLHAYITAPIRE--CVDKAIKRINEIIKEGVEVPENQNDLRKSQMKELALLNGT 373 E + LH IT E K + + E+ K V E +++L+K Q+ ELA++NGT Sbjct: 199 WEHLSDDLHVLITVEDTENRATVKLAQAVAEVQKLLVPQAEGEDELKKRQLMELAIINGT 258 Query: 374 FRE 382 +R+ Sbjct: 259 YRD 261
>sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppressor gld-1 (Defective in germ line development protein 1) Length = 463 Score = 72.4 bits (176), Expect = 2e-12 Identities = 39/138 (28%), Positives = 72/138 (52%), Gaps = 9/138 (6%) Frame = +2 Query: 26 DKVFIPQDAHPELNFVGLLIGPRGNTLKSLEKETGAKIIIRXXXXXXXXXXXXXXXXXXX 205 +K+++P++ +P+ NFVG ++GPRG T K LE++TG KI++R Sbjct: 207 EKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRGKAN 266 Query: 206 XE--DEPLHAYITAPIRECVD-------KAIKRINEIIKEGVEVPENQNDLRKSQMKELA 358 E ++ LH + +C D K + ++ K + PE ++L++ Q+ ELA Sbjct: 267 WEHLEDDLHVLV-----QCEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKRKQLMELA 321 Query: 359 LLNGTFREVDGINKLKAI 412 ++NGT+R + N + + Sbjct: 322 IINGTYRPMKSPNPARVM 339
>sp|P42083|YKCA_CAEEL Hypothetical protein B0280.11 in chromosome III Length = 634 Score = 63.9 bits (154), Expect = 6e-10 Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 4/124 (3%) Frame = +2 Query: 20 EIDKVFIPQDAHPELNFVGLLIGPRGNTLKSLEKETGAKIIIRXXXXXXXXXXXXXXXXX 199 +IDKVF P + N VG LIGPRG T++ LEK+ G K+ IR Sbjct: 513 KIDKVFFPPETANNTNPVGRLIGPRGMTIRQLEKDLGCKLFIRGKGCTKDDAKEERLRER 572 Query: 200 XXXE--DEPLHAYIT--APIRECVDKAIKRINEIIKEGVEVPENQNDLRKSQMKELALLN 367 E EP+H I+ + E + + I ++++E +E ++L++SQ+ +LA++ Sbjct: 573 VGWEHLKEPIHVMISVRSDSEEAASEKLSSIKKMLQEFLE--HTDSELKRSQLMQLAVIE 630 Query: 368 GTFR 379 GT + Sbjct: 631 GTLK 634
>sp|Q60749|SAM68_MOUSE KH domain containing, RNA binding, signal transduction associated protein 1 (p21 Ras GTPase-activating protein-associated p62) (GAP-associated tyrosine phosphoprotein p62) (Src-associated in mitosis 68 kDa protein) (Sam68) (p68) Length = 443 Score = 53.9 bits (128), Expect = 6e-07 Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 5/120 (4%) Frame = +2 Query: 26 DKVFIPQDAHPELNFVGLLIGPRGNTLKSLEKETGAKIIIRXXXXXXXXXXXXXXXXXXX 205 ++V IP +P+ NFVG ++GP+GNT+K L++ETGAKI + Sbjct: 158 ERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGD 217 Query: 206 XE----DEPLHAYITAPIRECVDKAI-KRINEIIKEGVEVPENQNDLRKSQMKELALLNG 370 + + LH +I C A+ E +K+ + VP+ +D+ + Q EL+ LNG Sbjct: 218 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFL-VPDMMDDICQEQFLELSYLNG 276
>sp|Q07666|SAM68_HUMAN KH domain containing, RNA binding, signal transduction associated protein 1 (p21 Ras GTPase-activating protein-associated p62) (GAP-associated tyrosine phosphoprotein p62) (Src-associated in mitosis 68 kDa protein) (Sam68) (p68) Length = 443 Score = 53.9 bits (128), Expect = 6e-07 Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 5/120 (4%) Frame = +2 Query: 26 DKVFIPQDAHPELNFVGLLIGPRGNTLKSLEKETGAKIIIRXXXXXXXXXXXXXXXXXXX 205 ++V IP +P+ NFVG ++GP+GNT+K L++ETGAKI + Sbjct: 158 ERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGD 217 Query: 206 XE----DEPLHAYITAPIRECVDKAI-KRINEIIKEGVEVPENQNDLRKSQMKELALLNG 370 + + LH +I C A+ E +K+ + VP+ +D+ + Q EL+ LNG Sbjct: 218 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFL-VPDMMDDICQEQFLELSYLNG 276
>sp|Q91V33|SAM68_RAT KH domain containing, RNA binding, signal transduction associated protein 1 (p21 Ras GTPase-activating protein-associated p62) (GAP-associated tyrosine phosphoprotein p62) (Src-associated in mitosis 68 kDa protein) (Sam68) (p68) Length = 443 Score = 53.9 bits (128), Expect = 6e-07 Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 5/120 (4%) Frame = +2 Query: 26 DKVFIPQDAHPELNFVGLLIGPRGNTLKSLEKETGAKIIIRXXXXXXXXXXXXXXXXXXX 205 ++V IP +P+ NFVG ++GP+GNT+K L++ETGAKI + Sbjct: 158 ERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGD 217 Query: 206 XE----DEPLHAYITAPIRECVDKAI-KRINEIIKEGVEVPENQNDLRKSQMKELALLNG 370 + + LH +I C A+ E +K+ + VP+ +D+ + Q EL+ LNG Sbjct: 218 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFL-VPDMMDDICQEQFLELSYLNG 276
>sp|Q8UUW7|SAM68_CHICK KH domain containing, RNA binding, signal transduction associated protein 1 (Src-associated in mitosis 68 kDa protein) (Sam68) Length = 433 Score = 53.9 bits (128), Expect = 6e-07 Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 5/120 (4%) Frame = +2 Query: 26 DKVFIPQDAHPELNFVGLLIGPRGNTLKSLEKETGAKIIIRXXXXXXXXXXXXXXXXXXX 205 ++V IP +P+ NFVG ++GP+GNT+K L++ETGAKI + Sbjct: 141 ERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGD 200 Query: 206 XE----DEPLHAYITAPIRECVDKAI-KRINEIIKEGVEVPENQNDLRKSQMKELALLNG 370 + + LH +I C A+ E +K+ + VP+ +D+ + Q EL+ LNG Sbjct: 201 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFL-VPDMMDDICQEQFLELSYLNG 259
>sp|P13230|GRP33_ARTSA Glycine-rich protein GRP33 Length = 308 Score = 41.6 bits (96), Expect = 0.003 Identities = 18/41 (43%), Positives = 27/41 (65%) Frame = +2 Query: 23 IDKVFIPQDAHPELNFVGLLIGPRGNTLKSLEKETGAKIII 145 + + +P D P+ NF+G L+GP G+T+K L+ ET KI I Sbjct: 75 VSRCCLPVDQFPKYNFLGKLLGPGGSTMKQLQDETMTKISI 115
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,641,301
Number of Sequences: 369166
Number of extensions: 2320258
Number of successful extensions: 6714
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6679
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9558791870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
