Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_M19
(798 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q15637|SF01_HUMAN Splicing factor 1 (Zinc finger protein... 149 7e-36
sp|Q64213|SF01_MOUSE Splicing factor 1 (Zinc finger protein... 149 7e-36
sp|O01367|HOW_DROME Held out wings protein (KH-domain prote... 54 4e-07
sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppres... 50 7e-06
sp|P42083|YKCA_CAEEL Hypothetical protein B0280.11 in chrom... 47 5e-05
sp|Q60749|SAM68_MOUSE KH domain containing, RNA binding, si... 36 0.14
sp|Q07666|SAM68_HUMAN KH domain containing, RNA binding, si... 36 0.14
sp|Q91V33|SAM68_RAT KH domain containing, RNA binding, sign... 36 0.14
sp|Q8UUW7|SAM68_CHICK KH domain containing, RNA binding, si... 36 0.14
sp|P20527|YVAR_VACCC Hypothetical 8.5 kDa protein 33 1.2
>sp|Q15637|SF01_HUMAN Splicing factor 1 (Zinc finger protein 162) (Transcription factor
ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch
point binding protein mBBP) (BBP)
Length = 639
Score = 149 bits (377), Expect = 7e-36
Identities = 82/170 (48%), Positives = 107/170 (62%), Gaps = 1/170 (0%)
Frame = +3
Query: 3 LIGPRGNTLKSLEKETGAKIIIRXXXXXXXXXXXXXXXXXXXXEDEPLHAYITAPIRECV 182
LIGPRGNTLK++EKE AKI+IR EDEPLHA +TA E V
Sbjct: 156 LIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENV 215
Query: 183 DKAIKRINEIIKEGVEVPENQNDFRKSQMKELALLNGTFREVDGINKLKAIAEAQT-IVT 359
KA+++I I+K+G+E PE+QND RK Q++ELA LNGT RE D L+ ++T +T
Sbjct: 216 KKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN-RILRPWQSSETRSIT 274
Query: 360 NTIICSLCGGVGHIPSDCKVKRPLNKIESCFSVEKTKMDSEYCALMEELG 509
NT +C+ CGG GHI SDCK +RP + + +K +MD EY +LM ELG
Sbjct: 275 NTTVCTKCGGAGHIASDCKFQRPGDPQS---AQDKARMDKEYLSLMAELG 321
>sp|Q64213|SF01_MOUSE Splicing factor 1 (Zinc finger protein 162) (Transcription factor
ZFM1) (mZFM) (Zinc finger gene in MEN1 locus) (Mammalian
branch point binding protein mBBP) (BBP) (CW17)
Length = 653
Score = 149 bits (377), Expect = 7e-36
Identities = 82/170 (48%), Positives = 107/170 (62%), Gaps = 1/170 (0%)
Frame = +3
Query: 3 LIGPRGNTLKSLEKETGAKIIIRXXXXXXXXXXXXXXXXXXXXEDEPLHAYITAPIRECV 182
LIGPRGNTLK++EKE AKI+IR EDEPLHA +TA E V
Sbjct: 156 LIGPRGNTLKNIEKECNAKIMIRGKGSVEEGKVGRKDGQMLPGEDEPLHALVTANTMENV 215
Query: 183 DKAIKRINEIIKEGVEVPENQNDFRKSQMKELALLNGTFREVDGINKLKAIAEAQT-IVT 359
KA+++I I+K+G+E PE+QND RK Q++ELA LNGT RE D L+ ++T +T
Sbjct: 216 KKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN-RILRPWQSSETRSIT 274
Query: 360 NTIICSLCGGVGHIPSDCKVKRPLNKIESCFSVEKTKMDSEYCALMEELG 509
NT +C+ CGG GHI SDCK +RP + + +K +MD EY +LM ELG
Sbjct: 275 NTTVCTKCGGAGHIASDCKFQRPGDPQS---AQDKARMDKEYLSLMAELG 321
>sp|O01367|HOW_DROME Held out wings protein (KH-domain protein KH93F) (Putative
RNA-binding protein) (Muscle-specific protein) (Wings
held out protein) (Struthio protein) (Quaking-related
93F)
Length = 405
Score = 54.3 bits (129), Expect = 4e-07
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Frame = +3
Query: 3 LIGPRGNTLKSLEKETGAKIIIRXXXXXXXXXXXXXXXXXXXXE--DEPLHAYITAPIRE 176
++GPRG T K LE+ETG KI++R E + LH IT E
Sbjct: 157 ILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANRGKPNWEHLSDDLHVLITVEDTE 216
Query: 177 --CVDKAIKRINEIIKEGVEVPENQNDFRKSQMKELALLNGTFRE 305
K + + E+ K V E +++ +K Q+ ELA++NGT+R+
Sbjct: 217 NRATVKLAQAVAEVQKLLVPQAEGEDELKKRQLMELAIINGTYRD 261
>sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppressor gld-1 (Defective in germ
line development protein 1)
Length = 463
Score = 50.1 bits (118), Expect = 7e-06
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Frame = +3
Query: 3 LIGPRGNTLKSLEKETGAKIIIRXXXXXXXXXXXXXXXXXXXXE--DEPLHAYITAPIRE 176
++GPRG T K LE++TG KI++R E ++ LH + +
Sbjct: 225 ILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRGKANWEHLEDDLHVLV-----Q 279
Query: 177 CVD-------KAIKRINEIIKEGVEVPENQNDFRKSQMKELALLNGTFREVDGINKLKAI 335
C D K + ++ K + PE ++ ++ Q+ ELA++NGT+R + N + +
Sbjct: 280 CEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKRKQLMELAIINGTYRPMKSPNPARVM 339
>sp|P42083|YKCA_CAEEL Hypothetical protein B0280.11 in chromosome III
Length = 634
Score = 47.4 bits (111), Expect = 5e-05
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Frame = +3
Query: 3 LIGPRGNTLKSLEKETGAKIIIRXXXXXXXXXXXXXXXXXXXXE--DEPLHAYIT--API 170
LIGPRG T++ LEK+ G K+ IR E EP+H I+ +
Sbjct: 533 LIGPRGMTIRQLEKDLGCKLFIRGKGCTKDDAKEERLRERVGWEHLKEPIHVMISVRSDS 592
Query: 171 RECVDKAIKRINEIIKEGVEVPENQNDFRKSQMKELALLNGTFR 302
E + + I ++++E +E ++ ++SQ+ +LA++ GT +
Sbjct: 593 EEAASEKLSSIKKMLQEFLE--HTDSELKRSQLMQLAVIEGTLK 634
>sp|Q60749|SAM68_MOUSE KH domain containing, RNA binding, signal transduction associated
protein 1 (p21 Ras GTPase-activating protein-associated
p62) (GAP-associated tyrosine phosphoprotein p62)
(Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
Length = 443
Score = 35.8 bits (81), Expect = 0.14
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Frame = +3
Query: 3 LIGPRGNTLKSLEKETGAKIIIRXXXXXXXXXXXXXXXXXXXXE----DEPLHAYITAPI 170
++GP+GNT+K L++ETGAKI + + + LH +I
Sbjct: 176 ILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFG 235
Query: 171 RECVDKAI-KRINEIIKEGVEVPENQNDFRKSQMKELALLNG 293
C A+ E +K+ + VP+ +D + Q EL+ LNG
Sbjct: 236 PPCEAYALMAHAMEEVKKFL-VPDMMDDICQEQFLELSYLNG 276
>sp|Q07666|SAM68_HUMAN KH domain containing, RNA binding, signal transduction associated
protein 1 (p21 Ras GTPase-activating protein-associated
p62) (GAP-associated tyrosine phosphoprotein p62)
(Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
Length = 443
Score = 35.8 bits (81), Expect = 0.14
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Frame = +3
Query: 3 LIGPRGNTLKSLEKETGAKIIIRXXXXXXXXXXXXXXXXXXXXE----DEPLHAYITAPI 170
++GP+GNT+K L++ETGAKI + + + LH +I
Sbjct: 176 ILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFG 235
Query: 171 RECVDKAI-KRINEIIKEGVEVPENQNDFRKSQMKELALLNG 293
C A+ E +K+ + VP+ +D + Q EL+ LNG
Sbjct: 236 PPCEAYALMAHAMEEVKKFL-VPDMMDDICQEQFLELSYLNG 276
>sp|Q91V33|SAM68_RAT KH domain containing, RNA binding, signal transduction associated
protein 1 (p21 Ras GTPase-activating protein-associated
p62) (GAP-associated tyrosine phosphoprotein p62)
(Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
Length = 443
Score = 35.8 bits (81), Expect = 0.14
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Frame = +3
Query: 3 LIGPRGNTLKSLEKETGAKIIIRXXXXXXXXXXXXXXXXXXXXE----DEPLHAYITAPI 170
++GP+GNT+K L++ETGAKI + + + LH +I
Sbjct: 176 ILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFG 235
Query: 171 RECVDKAI-KRINEIIKEGVEVPENQNDFRKSQMKELALLNG 293
C A+ E +K+ + VP+ +D + Q EL+ LNG
Sbjct: 236 PPCEAYALMAHAMEEVKKFL-VPDMMDDICQEQFLELSYLNG 276
>sp|Q8UUW7|SAM68_CHICK KH domain containing, RNA binding, signal transduction associated
protein 1 (Src-associated in mitosis 68 kDa protein)
(Sam68)
Length = 433
Score = 35.8 bits (81), Expect = 0.14
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Frame = +3
Query: 3 LIGPRGNTLKSLEKETGAKIIIRXXXXXXXXXXXXXXXXXXXXE----DEPLHAYITAPI 170
++GP+GNT+K L++ETGAKI + + + LH +I
Sbjct: 159 ILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFG 218
Query: 171 RECVDKAI-KRINEIIKEGVEVPENQNDFRKSQMKELALLNG 293
C A+ E +K+ + VP+ +D + Q EL+ LNG
Sbjct: 219 PPCEAYALMAHAMEEVKKFL-VPDMMDDICQEQFLELSYLNG 259
>sp|P20527|YVAR_VACCC Hypothetical 8.5 kDa protein
Length = 66
Score = 32.7 bits (73), Expect = 1.2
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = -2
Query: 371 NYRIRNDRLRFCDCFQFIYSVDFSERSIQKSQFFHLTF--SKIILIFWNFNTF 219
N+RI+ DR F CF++++ F + +FH++ K+++IF N +F
Sbjct: 7 NFRIQYDRRSFFKCFRYVF---FEIIHFMREYWFHVSTKEGKLVIIFMNLYSF 56
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,445,308
Number of Sequences: 369166
Number of extensions: 2058055
Number of successful extensions: 6157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6124
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7522142940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)