Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_F03
(874 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q15637|SF01_HUMAN Splicing factor 1 (Zinc finger protein... 183 5e-46
sp|Q64213|SF01_MOUSE Splicing factor 1 (Zinc finger protein... 183 5e-46
sp|O01367|HOW_DROME Held out wings protein (KH-domain prote... 77 5e-14
sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppres... 72 2e-12
sp|P42083|YKCA_CAEEL Hypothetical protein B0280.11 in chrom... 64 5e-10
sp|Q60749|SAM68_MOUSE KH domain containing, RNA binding, si... 54 6e-07
sp|Q07666|SAM68_HUMAN KH domain containing, RNA binding, si... 54 6e-07
sp|Q91V33|SAM68_RAT KH domain containing, RNA binding, sign... 54 6e-07
sp|Q8UUW7|SAM68_CHICK KH domain containing, RNA binding, si... 54 6e-07
sp|P13230|GRP33_ARTSA Glycine-rich protein GRP33 42 0.003
>sp|Q15637|SF01_HUMAN Splicing factor 1 (Zinc finger protein 162) (Transcription factor
ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch
point binding protein mBBP) (BBP)
Length = 639
Score = 183 bits (465), Expect = 5e-46
Identities = 99/194 (51%), Positives = 126/194 (64%), Gaps = 1/194 (0%)
Frame = +2
Query: 8 PNNREIDKVFIPQDAHPELNFVGLLIGPRGNTLKSLEKETGAKIIIRXXXXXXXXXXXXX 187
P R DKV IPQD +PE+NFVGLLIGPRGNTLK++EKE AKI+IR
Sbjct: 132 PATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRK 191
Query: 188 XXXXXXXEDEPLHAYITAPIRECVDKAIKRINEIIKEGVEVPENQNDLRKSQMKELALLN 367
EDEPLHA +TA E V KA+++I I+K+G+E PE+QNDLRK Q++ELA LN
Sbjct: 192 DGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLN 251
Query: 368 GTFREVDGINKLKAIAEAQT-IVTNTIICSLCGGVGHIPSDCKVKRPLNKIESCFSVEKT 544
GT RE D L+ ++T +TNT +C+ CGG GHI SDCK +RP + + +K
Sbjct: 252 GTLREDDN-RILRPWQSSETRSITNTTVCTKCGGAGHIASDCKFQRPGDPQS---AQDKA 307
Query: 545 KMDSEYCALMEELG 586
+MD EY +LM ELG
Sbjct: 308 RMDKEYLSLMAELG 321
>sp|Q64213|SF01_MOUSE Splicing factor 1 (Zinc finger protein 162) (Transcription factor
ZFM1) (mZFM) (Zinc finger gene in MEN1 locus) (Mammalian
branch point binding protein mBBP) (BBP) (CW17)
Length = 653
Score = 183 bits (465), Expect = 5e-46
Identities = 99/194 (51%), Positives = 126/194 (64%), Gaps = 1/194 (0%)
Frame = +2
Query: 8 PNNREIDKVFIPQDAHPELNFVGLLIGPRGNTLKSLEKETGAKIIIRXXXXXXXXXXXXX 187
P R DKV IPQD +PE+NFVGLLIGPRGNTLK++EKE AKI+IR
Sbjct: 132 PATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVEEGKVGRK 191
Query: 188 XXXXXXXEDEPLHAYITAPIRECVDKAIKRINEIIKEGVEVPENQNDLRKSQMKELALLN 367
EDEPLHA +TA E V KA+++I I+K+G+E PE+QNDLRK Q++ELA LN
Sbjct: 192 DGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLN 251
Query: 368 GTFREVDGINKLKAIAEAQT-IVTNTIICSLCGGVGHIPSDCKVKRPLNKIESCFSVEKT 544
GT RE D L+ ++T +TNT +C+ CGG GHI SDCK +RP + + +K
Sbjct: 252 GTLREDDN-RILRPWQSSETRSITNTTVCTKCGGAGHIASDCKFQRPGDPQS---AQDKA 307
Query: 545 KMDSEYCALMEELG 586
+MD EY +LM ELG
Sbjct: 308 RMDKEYLSLMAELG 321
>sp|O01367|HOW_DROME Held out wings protein (KH-domain protein KH93F) (Putative
RNA-binding protein) (Muscle-specific protein) (Wings
held out protein) (Struthio protein) (Quaking-related
93F)
Length = 405
Score = 77.4 bits (189), Expect = 5e-14
Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
Frame = +2
Query: 26 DKVFIPQDAHPELNFVGLLIGPRGNTLKSLEKETGAKIIIRXXXXXXXXXXXXXXXXXXX 205
+KV++P HP+ NFVG ++GPRG T K LE+ETG KI++R
Sbjct: 139 EKVYVPVREHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANRGKPN 198
Query: 206 XE--DEPLHAYITAPIRE--CVDKAIKRINEIIKEGVEVPENQNDLRKSQMKELALLNGT 373
E + LH IT E K + + E+ K V E +++L+K Q+ ELA++NGT
Sbjct: 199 WEHLSDDLHVLITVEDTENRATVKLAQAVAEVQKLLVPQAEGEDELKKRQLMELAIINGT 258
Query: 374 FRE 382
+R+
Sbjct: 259 YRD 261
>sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppressor gld-1 (Defective in germ
line development protein 1)
Length = 463
Score = 72.4 bits (176), Expect = 2e-12
Identities = 39/138 (28%), Positives = 72/138 (52%), Gaps = 9/138 (6%)
Frame = +2
Query: 26 DKVFIPQDAHPELNFVGLLIGPRGNTLKSLEKETGAKIIIRXXXXXXXXXXXXXXXXXXX 205
+K+++P++ +P+ NFVG ++GPRG T K LE++TG KI++R
Sbjct: 207 EKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRGKAN 266
Query: 206 XE--DEPLHAYITAPIRECVD-------KAIKRINEIIKEGVEVPENQNDLRKSQMKELA 358
E ++ LH + +C D K + ++ K + PE ++L++ Q+ ELA
Sbjct: 267 WEHLEDDLHVLV-----QCEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKRKQLMELA 321
Query: 359 LLNGTFREVDGINKLKAI 412
++NGT+R + N + +
Sbjct: 322 IINGTYRPMKSPNPARVM 339
>sp|P42083|YKCA_CAEEL Hypothetical protein B0280.11 in chromosome III
Length = 634
Score = 63.9 bits (154), Expect = 5e-10
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Frame = +2
Query: 20 EIDKVFIPQDAHPELNFVGLLIGPRGNTLKSLEKETGAKIIIRXXXXXXXXXXXXXXXXX 199
+IDKVF P + N VG LIGPRG T++ LEK+ G K+ IR
Sbjct: 513 KIDKVFFPPETANNTNPVGRLIGPRGMTIRQLEKDLGCKLFIRGKGCTKDDAKEERLRER 572
Query: 200 XXXE--DEPLHAYIT--APIRECVDKAIKRINEIIKEGVEVPENQNDLRKSQMKELALLN 367
E EP+H I+ + E + + I ++++E +E ++L++SQ+ +LA++
Sbjct: 573 VGWEHLKEPIHVMISVRSDSEEAASEKLSSIKKMLQEFLE--HTDSELKRSQLMQLAVIE 630
Query: 368 GTFR 379
GT +
Sbjct: 631 GTLK 634
>sp|Q60749|SAM68_MOUSE KH domain containing, RNA binding, signal transduction associated
protein 1 (p21 Ras GTPase-activating protein-associated
p62) (GAP-associated tyrosine phosphoprotein p62)
(Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
Length = 443
Score = 53.9 bits (128), Expect = 6e-07
Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Frame = +2
Query: 26 DKVFIPQDAHPELNFVGLLIGPRGNTLKSLEKETGAKIIIRXXXXXXXXXXXXXXXXXXX 205
++V IP +P+ NFVG ++GP+GNT+K L++ETGAKI +
Sbjct: 158 ERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGD 217
Query: 206 XE----DEPLHAYITAPIRECVDKAI-KRINEIIKEGVEVPENQNDLRKSQMKELALLNG 370
+ + LH +I C A+ E +K+ + VP+ +D+ + Q EL+ LNG
Sbjct: 218 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFL-VPDMMDDICQEQFLELSYLNG 276
>sp|Q07666|SAM68_HUMAN KH domain containing, RNA binding, signal transduction associated
protein 1 (p21 Ras GTPase-activating protein-associated
p62) (GAP-associated tyrosine phosphoprotein p62)
(Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
Length = 443
Score = 53.9 bits (128), Expect = 6e-07
Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Frame = +2
Query: 26 DKVFIPQDAHPELNFVGLLIGPRGNTLKSLEKETGAKIIIRXXXXXXXXXXXXXXXXXXX 205
++V IP +P+ NFVG ++GP+GNT+K L++ETGAKI +
Sbjct: 158 ERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGD 217
Query: 206 XE----DEPLHAYITAPIRECVDKAI-KRINEIIKEGVEVPENQNDLRKSQMKELALLNG 370
+ + LH +I C A+ E +K+ + VP+ +D+ + Q EL+ LNG
Sbjct: 218 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFL-VPDMMDDICQEQFLELSYLNG 276
>sp|Q91V33|SAM68_RAT KH domain containing, RNA binding, signal transduction associated
protein 1 (p21 Ras GTPase-activating protein-associated
p62) (GAP-associated tyrosine phosphoprotein p62)
(Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
Length = 443
Score = 53.9 bits (128), Expect = 6e-07
Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Frame = +2
Query: 26 DKVFIPQDAHPELNFVGLLIGPRGNTLKSLEKETGAKIIIRXXXXXXXXXXXXXXXXXXX 205
++V IP +P+ NFVG ++GP+GNT+K L++ETGAKI +
Sbjct: 158 ERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGD 217
Query: 206 XE----DEPLHAYITAPIRECVDKAI-KRINEIIKEGVEVPENQNDLRKSQMKELALLNG 370
+ + LH +I C A+ E +K+ + VP+ +D+ + Q EL+ LNG
Sbjct: 218 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFL-VPDMMDDICQEQFLELSYLNG 276
>sp|Q8UUW7|SAM68_CHICK KH domain containing, RNA binding, signal transduction associated
protein 1 (Src-associated in mitosis 68 kDa protein)
(Sam68)
Length = 433
Score = 53.9 bits (128), Expect = 6e-07
Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Frame = +2
Query: 26 DKVFIPQDAHPELNFVGLLIGPRGNTLKSLEKETGAKIIIRXXXXXXXXXXXXXXXXXXX 205
++V IP +P+ NFVG ++GP+GNT+K L++ETGAKI +
Sbjct: 141 ERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGD 200
Query: 206 XE----DEPLHAYITAPIRECVDKAI-KRINEIIKEGVEVPENQNDLRKSQMKELALLNG 370
+ + LH +I C A+ E +K+ + VP+ +D+ + Q EL+ LNG
Sbjct: 201 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFL-VPDMMDDICQEQFLELSYLNG 259
>sp|P13230|GRP33_ARTSA Glycine-rich protein GRP33
Length = 308
Score = 41.6 bits (96), Expect = 0.003
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +2
Query: 23 IDKVFIPQDAHPELNFVGLLIGPRGNTLKSLEKETGAKIII 145
+ + +P D P+ NF+G L+GP G+T+K L+ ET KI I
Sbjct: 75 VSRCCLPVDQFPKYNFLGKLLGPGGSTMKQLQDETMTKISI 115
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,257,474
Number of Sequences: 369166
Number of extensions: 2242430
Number of successful extensions: 6785
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6752
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)