Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_L22
(681 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q15637|SF01_HUMAN Splicing factor 1 (Zinc finger protein... 123 4e-28
sp|Q64213|SF01_MOUSE Splicing factor 1 (Zinc finger protein... 123 4e-28
sp|O01367|HOW_DROME Held out wings protein (KH-domain prote... 36 0.082
sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppres... 34 0.31
sp|O95201|ZN205_HUMAN Zinc finger protein 205 (Zinc finger ... 32 2.0
sp|P20527|YVAR_VACCC Hypothetical 8.5 kDa protein 32 2.0
sp|P04023|GAG_IPHA Retrovirus-related Gag polyprotein 32 2.0
sp|P46471|PRS7_MOUSE 26S protease regulatory subunit 7 (MSS... 31 3.4
sp|Q9SSB5|PRS7_ARATH 26S protease regulatory subunit 7 (26S... 31 3.4
sp|P07900|HS90A_HUMAN Heat shock protein HSP 90-alpha (HSP 86) 31 3.4
>sp|Q15637|SF01_HUMAN Splicing factor 1 (Zinc finger protein 162) (Transcription factor
ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch
point binding protein mBBP) (BBP)
Length = 639
Score = 123 bits (309), Expect = 4e-28
Identities = 65/127 (51%), Positives = 87/127 (68%), Gaps = 1/127 (0%)
Frame = +1
Query: 61 EDEPLHAYITAPIRECVDKAIKRINEIIKEGVEVPENQNDLRKSQMKELALLNGTFREVD 240
EDEPLHA +TA E V KA+++I I+K+G+E PE+QNDLRK Q++ELA LNGT RE D
Sbjct: 199 EDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDD 258
Query: 241 GINKLKAIAEAQT-IVTNTIICSLCGGVGHIPSDCKVKRPLNKIESCFSVEKTKMDSEYC 417
L+ ++T +TNT +C+ CGG GHI SDCK +RP + + +K +MD EY
Sbjct: 259 N-RILRPWQSSETRSITNTTVCTKCGGAGHIASDCKFQRPGDPQS---AQDKARMDKEYL 314
Query: 418 ALMEELG 438
+LM ELG
Sbjct: 315 SLMAELG 321
>sp|Q64213|SF01_MOUSE Splicing factor 1 (Zinc finger protein 162) (Transcription factor
ZFM1) (mZFM) (Zinc finger gene in MEN1 locus) (Mammalian
branch point binding protein mBBP) (BBP) (CW17)
Length = 653
Score = 123 bits (309), Expect = 4e-28
Identities = 65/127 (51%), Positives = 87/127 (68%), Gaps = 1/127 (0%)
Frame = +1
Query: 61 EDEPLHAYITAPIRECVDKAIKRINEIIKEGVEVPENQNDLRKSQMKELALLNGTFREVD 240
EDEPLHA +TA E V KA+++I I+K+G+E PE+QNDLRK Q++ELA LNGT RE D
Sbjct: 199 EDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDD 258
Query: 241 GINKLKAIAEAQT-IVTNTIICSLCGGVGHIPSDCKVKRPLNKIESCFSVEKTKMDSEYC 417
L+ ++T +TNT +C+ CGG GHI SDCK +RP + + +K +MD EY
Sbjct: 259 N-RILRPWQSSETRSITNTTVCTKCGGAGHIASDCKFQRPGDPQS---AQDKARMDKEYL 314
Query: 418 ALMEELG 438
+LM ELG
Sbjct: 315 SLMAELG 321
>sp|O01367|HOW_DROME Held out wings protein (KH-domain protein KH93F) (Putative
RNA-binding protein) (Muscle-specific protein) (Wings
held out protein) (Struthio protein) (Quaking-related
93F)
Length = 405
Score = 36.2 bits (82), Expect = 0.082
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +1
Query: 67 EPLHAYITAPIRE--CVDKAIKRINEIIKEGVEVPENQNDLRKSQMKELALLNGTFRE 234
+ LH IT E K + + E+ K V E +++L+K Q+ ELA++NGT+R+
Sbjct: 204 DDLHVLITVEDTENRATVKLAQAVAEVQKLLVPQAEGEDELKKRQLMELAIINGTYRD 261
>sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppressor gld-1 (Defective in germ
line development protein 1)
Length = 463
Score = 34.3 bits (77), Expect = 0.31
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = +1
Query: 130 INEIIKEGVEVPENQNDLRKSQMKELALLNGTFREVDGINKLKAI 264
+ ++ K + PE ++L++ Q+ ELA++NGT+R + N + +
Sbjct: 295 LEQVKKLLIPAPEGTDELKRKQLMELAIINGTYRPMKSPNPARVM 339
>sp|O95201|ZN205_HUMAN Zinc finger protein 205 (Zinc finger protein 210)
Length = 504
Score = 31.6 bits (70), Expect = 2.0
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 381 QRGENENGQRILRPDGRVGRRSERCAQ 461
++G E+G+ L PD VGR+S RC Q
Sbjct: 236 EKGAPESGEEGLAPDSEVGRKSYRCEQ 262
>sp|P20527|YVAR_VACCC Hypothetical 8.5 kDa protein
Length = 66
Score = 31.6 bits (70), Expect = 2.0
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = -1
Query: 300 NYRIRNDRLRFCDCFQFIYSVDFSERSIQKSQFFHLTFSQ--IILIFRNFNTF 148
N+RI+ DR F CF++++ F + +FH++ + +++IF N +F
Sbjct: 7 NFRIQYDRRSFFKCFRYVF---FEIIHFMREYWFHVSTKEGKLVIIFMNLYSF 56
>sp|P04023|GAG_IPHA Retrovirus-related Gag polyprotein
Length = 572
Score = 31.6 bits (70), Expect = 2.0
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +1
Query: 283 VTNTIICSLCGGVGHIPSDCKVKRPLNKIESCFSVEKTKMDSEYCALMEELGVDR 447
++N C CG +GH+ DC+ + + C+ K + C +M+ G D+
Sbjct: 443 LSNRKACFNCGRMGHLKKDCQAPERTRESKLCYRCGKGYHRASECGIMDS-GADK 496
>sp|P46471|PRS7_MOUSE 26S protease regulatory subunit 7 (MSS1 protein)
Length = 433
Score = 30.8 bits (68), Expect = 3.4
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = -3
Query: 628 DSCFVRSVANKSGERYAGQGARMM 557
D+CF+R + ++ ++Y G+GARM+
Sbjct: 234 DACFIRVIGSELVQKYVGEGARMV 257
>sp|Q9SSB5|PRS7_ARATH 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S
proteasome AAA-ATPase subunit RPT1a) (Regulatory
particle triple-A ATPase subunit 1a)
Length = 426
Score = 30.8 bits (68), Expect = 3.4
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = -3
Query: 628 DSCFVRSVANKSGERYAGQGARMM 557
D+CF+R + ++ ++Y G+GARM+
Sbjct: 227 DACFIRVIGSELVQKYVGEGARMV 250
>sp|P07900|HS90A_HUMAN Heat shock protein HSP 90-alpha (HSP 86)
Length = 732
Score = 30.8 bits (68), Expect = 3.4
Identities = 20/82 (24%), Positives = 39/82 (47%)
Frame = +1
Query: 67 EPLHAYITAPIRECVDKAIKRINEIIKEGVEVPENQNDLRKSQMKELALLNGTFREVDGI 246
EP+ Y ++E K + + KEG+E+PE++ + +K + K+ N D +
Sbjct: 523 EPIDEYCVQQLKEFEGKTLVSVT---KEGLELPEDEEEKKKQEEKKTKFENLCKIMKDIL 579
Query: 247 NKLKAIAEAQTIVTNTIICSLC 312
K + +V+N ++ S C
Sbjct: 580 EK----KVEKVVVSNRLVTSPC 597
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,254,437
Number of Sequences: 369166
Number of extensions: 1807099
Number of successful extensions: 5583
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5555
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5782011865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)