Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_F24
(754 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q15637|SF01_HUMAN Splicing factor 1 (Zinc finger protein... 133 4e-31
sp|Q64213|SF01_MOUSE Splicing factor 1 (Zinc finger protein... 133 4e-31
sp|O01367|HOW_DROME Held out wings protein (KH-domain prote... 36 0.097
sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppres... 34 0.37
sp|O74360|RGA4_SCHPO Probable Rho-type GTPase-activating pr... 33 0.63
sp|O95201|ZN205_HUMAN Zinc finger protein 205 (Zinc finger ... 32 2.4
sp|P20527|YVAR_VACCC Hypothetical 8.5 kDa protein 32 2.4
sp|P04023|GAG_IPHA Retrovirus-related Gag polyprotein 32 2.4
sp|P46471|PRS7_MOUSE 26S protease regulatory subunit 7 (MSS... 31 4.1
sp|Q9SSB5|PRS7_ARATH 26S protease regulatory subunit 7 (26S... 31 4.1
>sp|Q15637|SF01_HUMAN Splicing factor 1 (Zinc finger protein 162) (Transcription factor
ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch
point binding protein mBBP) (BBP)
Length = 639
Score = 133 bits (335), Expect = 4e-31
Identities = 70/135 (51%), Positives = 93/135 (68%), Gaps = 1/135 (0%)
Frame = +3
Query: 9 EDGLPLPGEDEPLHAYITAPIRECVDKAIKRINEIIKEGVEVPENQNDLRKSQMKELALL 188
+DG LPGEDEPLHA +TA E V KA+++I I+K+G+E PE+QNDLRK Q++ELA L
Sbjct: 191 KDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARL 250
Query: 189 NGTFREVDGINKLKAIAEAQT-IVTNTIICSLCGGVGHIPSDCKVKRPLNKIESCFSVEK 365
NGT RE D L+ ++T +TNT +C+ CGG GHI SDCK +RP + + +K
Sbjct: 251 NGTLREDDN-RILRPWQSSETRSITNTTVCTKCGGAGHIASDCKFQRPGDPQS---AQDK 306
Query: 366 TKMDSEYCALMEELG 410
+MD EY +LM ELG
Sbjct: 307 ARMDKEYLSLMAELG 321
>sp|Q64213|SF01_MOUSE Splicing factor 1 (Zinc finger protein 162) (Transcription factor
ZFM1) (mZFM) (Zinc finger gene in MEN1 locus) (Mammalian
branch point binding protein mBBP) (BBP) (CW17)
Length = 653
Score = 133 bits (335), Expect = 4e-31
Identities = 70/135 (51%), Positives = 93/135 (68%), Gaps = 1/135 (0%)
Frame = +3
Query: 9 EDGLPLPGEDEPLHAYITAPIRECVDKAIKRINEIIKEGVEVPENQNDLRKSQMKELALL 188
+DG LPGEDEPLHA +TA E V KA+++I I+K+G+E PE+QNDLRK Q++ELA L
Sbjct: 191 KDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARL 250
Query: 189 NGTFREVDGINKLKAIAEAQT-IVTNTIICSLCGGVGHIPSDCKVKRPLNKIESCFSVEK 365
NGT RE D L+ ++T +TNT +C+ CGG GHI SDCK +RP + + +K
Sbjct: 251 NGTLREDDN-RILRPWQSSETRSITNTTVCTKCGGAGHIASDCKFQRPGDPQS---AQDK 306
Query: 366 TKMDSEYCALMEELG 410
+MD EY +LM ELG
Sbjct: 307 ARMDKEYLSLMAELG 321
>sp|O01367|HOW_DROME Held out wings protein (KH-domain protein KH93F) (Putative
RNA-binding protein) (Muscle-specific protein) (Wings
held out protein) (Struthio protein) (Quaking-related
93F)
Length = 405
Score = 36.2 bits (82), Expect = 0.097
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +3
Query: 39 EPLHAYITAPIRE--CVDKAIKRINEIIKEGVEVPENQNDLRKSQMKELALLNGTFRE 206
+ LH IT E K + + E+ K V E +++L+K Q+ ELA++NGT+R+
Sbjct: 204 DDLHVLITVEDTENRATVKLAQAVAEVQKLLVPQAEGEDELKKRQLMELAIINGTYRD 261
>sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppressor gld-1 (Defective in germ
line development protein 1)
Length = 463
Score = 34.3 bits (77), Expect = 0.37
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = +3
Query: 102 INEIIKEGVEVPENQNDLRKSQMKELALLNGTFREVDGINKLKAI 236
+ ++ K + PE ++L++ Q+ ELA++NGT+R + N + +
Sbjct: 295 LEQVKKLLIPAPEGTDELKRKQLMELAIINGTYRPMKSPNPARVM 339
>sp|O74360|RGA4_SCHPO Probable Rho-type GTPase-activating protein 4
Length = 933
Score = 33.5 bits (75), Expect = 0.63
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = -1
Query: 559 FHWETDDPRLASLM*IEHQIEIAKQKHSILPSF---DCFAKLSNGLRAPFRSTPNSSIRA 389
FHW+ D P ++S I + ++++ +P+ K SN LRA ++ +S+I
Sbjct: 672 FHWKRDSPHMSSTPSISEEHLASEEQEDFVPAVGHCKLCGKYSNELRAHYQDCVSSTIDR 731
Query: 388 QY 383
QY
Sbjct: 732 QY 733
>sp|O95201|ZN205_HUMAN Zinc finger protein 205 (Zinc finger protein 210)
Length = 504
Score = 31.6 bits (70), Expect = 2.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 353 QRGENENGQRILRPDGRVGRRSERCAQ 433
++G E+G+ L PD VGR+S RC Q
Sbjct: 236 EKGAPESGEEGLAPDSEVGRKSYRCEQ 262
>sp|P20527|YVAR_VACCC Hypothetical 8.5 kDa protein
Length = 66
Score = 31.6 bits (70), Expect = 2.4
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = -3
Query: 272 NYRIRNDRLRFCDCFQFIYSVDFSERSIQKSQFFHLTFSQ--IILIFRNFNTF 120
N+RI+ DR F CF++++ F + +FH++ + +++IF N +F
Sbjct: 7 NFRIQYDRRSFFKCFRYVF---FEIIHFMREYWFHVSTKEGKLVIIFMNLYSF 56
>sp|P04023|GAG_IPHA Retrovirus-related Gag polyprotein
Length = 572
Score = 31.6 bits (70), Expect = 2.4
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +3
Query: 255 VTNTIICSLCGGVGHIPSDCKVKRPLNKIESCFSVEKTKMDSEYCALMEELGVDR 419
++N C CG +GH+ DC+ + + C+ K + C +M+ G D+
Sbjct: 443 LSNRKACFNCGRMGHLKKDCQAPERTRESKLCYRCGKGYHRASECGIMDS-GADK 496
>sp|P46471|PRS7_MOUSE 26S protease regulatory subunit 7 (MSS1 protein)
Length = 433
Score = 30.8 bits (68), Expect = 4.1
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = -3
Query: 653 DSCFVRSVANKSGERYAGQGARMM 582
D+CF+R + ++ ++Y G+GARM+
Sbjct: 234 DACFIRVIGSELVQKYVGEGARMV 257
>sp|Q9SSB5|PRS7_ARATH 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S
proteasome AAA-ATPase subunit RPT1a) (Regulatory
particle triple-A ATPase subunit 1a)
Length = 426
Score = 30.8 bits (68), Expect = 4.1
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = -3
Query: 653 DSCFVRSVANKSGERYAGQGARMM 582
D+CF+R + ++ ++Y G+GARM+
Sbjct: 227 DACFIRVIGSELVQKYVGEGARMV 250
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,706,976
Number of Sequences: 369166
Number of extensions: 2028317
Number of successful extensions: 5962
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5930
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6873311200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)