Planaria EST Database

DrC_00554

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00554
         (821 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9H444|CHM4B_HUMAN  Charged multivesicular body protein 4...   177   3e-44
sp|Q9D8B3|CHM4B_MOUSE  Charged multivesicular body protein 4...   177   4e-44
sp|Q5XGW6|CHM4B_XENLA  Charged multivesicular body protein 4...   174   2e-43
sp|Q6GL11|CHM4B_XENTR  Charged multivesicular body protein 4...   174   3e-43
sp|Q7ZVC4|CHM4B_BRARE  Charged multivesicular body protein 4...   173   4e-43
sp|Q5ZHP5|CHM4B_CHICK  Charged multivesicular body protein 4...   172   1e-42
sp|Q6IQ73|CHM4C_BRARE  Charged multivesicular body protein 4...   171   2e-42
sp|Q9BY43|CHM4A_HUMAN  Charged multivesicular body protein 4...   169   1e-41
sp|Q6GNN8|CHM4C_XENLA  Charged multivesicular body protein 4...   163   5e-40
sp|Q96CF2|CHM4C_HUMAN  Charged multivesicular body protein 4...   148   2e-35

>sp|Q9H444|CHM4B_HUMAN Charged multivesicular body protein 4b (Chromatin modifying protein
           4b) (CHMP4b) (Vacuolar protein sorting 7-2) (SNF7-2)
           (hSnf7-2) (SNF7 homolog associated with Alix 1) (hVps32)
          Length = 224

 Score =  177 bits (449), Expect = 3e-44
 Identities = 98/200 (49%), Positives = 124/200 (62%), Gaps = 3/200 (1%)
 Frame = +1

Query: 31  FKMSFASFFGKKKKESETPQEAIQKLKGIQDMLLKKQDFLEKKIEQELSTAKKHGTXXXX 210
           F   F +  GK  K   TPQEAIQ+L+  ++ML KKQ+FLEKKIEQEL+ AKKHGT    
Sbjct: 4   FGKLFGAGGGKAGKGGPTPQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHGTKNKR 63

Query: 211 XXXXXXXXXXXYEKQLTQIDGTLTTVEFQVEALENASTNTEVLKAMQVASQSLKAAHQNM 390
                      YEKQL QIDGTL+T+EFQ EALENA+TNTEVLK M  A++++KAAH NM
Sbjct: 64  AALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNM 123

Query: 391 DVDKVHDVMDEIQEQQELAKEIADAVSNPVGFGHXXXXXXXXXXXXXXXXXXXXNALLDV 570
           D+DKV ++M +I +QQELA+EI+ A+S PVGFG                       LL++
Sbjct: 124 DIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEI 183

Query: 571 GGRNA---NTEPTLGLPSAP 621
            G         P++ LPS P
Sbjct: 184 SGPETVPLPNVPSIALPSKP 203

>sp|Q9D8B3|CHM4B_MOUSE Charged multivesicular body protein 4b (Chromatin modifying protein
           4b) (CHMP4b)
          Length = 224

 Score =  177 bits (448), Expect = 4e-44
 Identities = 98/200 (49%), Positives = 124/200 (62%), Gaps = 3/200 (1%)
 Frame = +1

Query: 31  FKMSFASFFGKKKKESETPQEAIQKLKGIQDMLLKKQDFLEKKIEQELSTAKKHGTXXXX 210
           F   F +  GK  K   TPQEAIQ+L+  ++ML KKQ+FLEKKIEQEL+ AKKHGT    
Sbjct: 4   FGKLFGAGGGKAGKGGPTPQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHGTKNKR 63

Query: 211 XXXXXXXXXXXYEKQLTQIDGTLTTVEFQVEALENASTNTEVLKAMQVASQSLKAAHQNM 390
                      YEKQL QIDGTL+T+EFQ EALENA+TNTEVLK M  A++++KAAH NM
Sbjct: 64  AALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNM 123

Query: 391 DVDKVHDVMDEIQEQQELAKEIADAVSNPVGFGHXXXXXXXXXXXXXXXXXXXXNALLDV 570
           D+DKV ++M +I +QQELA+EI+ A+S PVGFG                       LL++
Sbjct: 124 DIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEI 183

Query: 571 GGRNA---NTEPTLGLPSAP 621
            G         P++ LPS P
Sbjct: 184 SGPETVPLPNVPSVALPSKP 203

>sp|Q5XGW6|CHM4B_XENLA Charged multivesicular body protein 4b (Chromatin modifying protein
           4b) (CHMP4b)
          Length = 222

 Score =  174 bits (442), Expect = 2e-43
 Identities = 97/192 (50%), Positives = 122/192 (63%)
 Frame = +1

Query: 58  GKKKKESETPQEAIQKLKGIQDMLLKKQDFLEKKIEQELSTAKKHGTXXXXXXXXXXXXX 237
           G K  +  +PQEAIQKL+  ++ML KKQ+FLEKKIEQEL TAKKHGT             
Sbjct: 11  GGKGAKGPSPQEAIQKLRDTEEMLAKKQEFLEKKIEQELVTAKKHGTKNKRAALQALKRK 70

Query: 238 XXYEKQLTQIDGTLTTVEFQVEALENASTNTEVLKAMQVASQSLKAAHQNMDVDKVHDVM 417
             YEKQL QIDGTL+T+EFQ EALENA+TNTEVLK M  A++++KAAH NMD++KV ++M
Sbjct: 71  KRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIEKVDELM 130

Query: 418 DEIQEQQELAKEIADAVSNPVGFGHXXXXXXXXXXXXXXXXXXXXNALLDVGGRNANTEP 597
            +I +QQELA+EI+DA+S PVGFG                       LL+V G       
Sbjct: 131 QDIADQQELAQEISDAISKPVGFGEDFDEDELMAELEELEQEELDKNLLEVQG-----PE 185

Query: 598 TLGLPSAPQHEL 633
           T+ LP+ P   L
Sbjct: 186 TVPLPNVPAASL 197

>sp|Q6GL11|CHM4B_XENTR Charged multivesicular body protein 4b (Chromatin modifying protein
           4b) (CHMP4b)
          Length = 222

 Score =  174 bits (441), Expect = 3e-43
 Identities = 96/187 (51%), Positives = 121/187 (64%)
 Frame = +1

Query: 58  GKKKKESETPQEAIQKLKGIQDMLLKKQDFLEKKIEQELSTAKKHGTXXXXXXXXXXXXX 237
           G K  +  +PQEAIQKL+  ++ML KKQ+FLEKKIEQEL TAKKHGT             
Sbjct: 11  GGKGAKGPSPQEAIQKLRDTEEMLTKKQEFLEKKIEQELVTAKKHGTKNKRAALQALKRK 70

Query: 238 XXYEKQLTQIDGTLTTVEFQVEALENASTNTEVLKAMQVASQSLKAAHQNMDVDKVHDVM 417
             YEKQL QIDGTL+T+EFQ EALENA+TNTEVLK M  A++++KAAH NMD++KV ++M
Sbjct: 71  KRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIEKVDELM 130

Query: 418 DEIQEQQELAKEIADAVSNPVGFGHXXXXXXXXXXXXXXXXXXXXNALLDVGGRNANTEP 597
            +I +QQELA+EI+DA+S PVGFG                       LL+V G    T P
Sbjct: 131 QDIADQQELAQEISDAISKPVGFGEDFDEDELMAELEELEQEELDKNLLEVQG--PETVP 188

Query: 598 TLGLPSA 618
              +P+A
Sbjct: 189 LPNVPAA 195

>sp|Q7ZVC4|CHM4B_BRARE Charged multivesicular body protein 4b (Chromatin modifying protein
           4b) (CHMP4b)
          Length = 220

 Score =  173 bits (439), Expect = 4e-43
 Identities = 98/196 (50%), Positives = 123/196 (62%), Gaps = 3/196 (1%)
 Frame = +1

Query: 43  FASFFGKKKK--ESETPQEAIQKLKGIQDMLLKKQDFLEKKIEQELSTAKKHGTXXXXXX 216
           F   FG   K  +S +PQEAIQ+L+  ++ML KKQ+FLEKKIEQEL TAKK+GT      
Sbjct: 4   FGKMFGSGGKGGKSASPQEAIQRLRETEEMLTKKQEFLEKKIEQELVTAKKNGTKNKRAA 63

Query: 217 XXXXXXXXXYEKQLTQIDGTLTTVEFQVEALENASTNTEVLKAMQVASQSLKAAHQNMDV 396
                    YEKQL QIDGTL+T+EFQ EALENA TNTEV+K M  A++++KAAH NMD+
Sbjct: 64  LQALKRKKRYEKQLAQIDGTLSTIEFQREALENAHTNTEVIKNMGYAAKAMKAAHDNMDI 123

Query: 397 DKVHDVMDEIQEQQELAKEIADAVSNPVGFGHXXXXXXXXXXXXXXXXXXXXNALLDVGG 576
           DKV ++M +I EQQELA+EI+DA+S PVGFG                       LL++G 
Sbjct: 124 DKVDELMQDIIEQQELAQEISDAISKPVGFGEEFDEDELLAELEELEQEELDKNLLEIGD 183

Query: 577 R-NANTEPTLGLPSAP 621
                  P+  LPS P
Sbjct: 184 NVPLPNVPSTSLPSRP 199

>sp|Q5ZHP5|CHM4B_CHICK Charged multivesicular body protein 4b (Chromatin modifying protein
           4b) (CHMP4b)
          Length = 227

 Score =  172 bits (436), Expect = 1e-42
 Identities = 95/199 (47%), Positives = 123/199 (61%), Gaps = 3/199 (1%)
 Frame = +1

Query: 34  KMSFASFFGKKKKESETPQEAIQKLKGIQDMLLKKQDFLEKKIEQELSTAKKHGTXXXXX 213
           K+  A   GK   +  +PQEAIQ+L+  ++ML KKQ+FLEKKIEQEL+ A+KHGT     
Sbjct: 7   KLFGAGAGGKGAGKGPSPQEAIQRLRDTEEMLSKKQEFLEKKIEQELAAARKHGTKNKRA 66

Query: 214 XXXXXXXXXXYEKQLTQIDGTLTTVEFQVEALENASTNTEVLKAMQVASQSLKAAHQNMD 393
                     YEKQL QIDGTL+T+EFQ EALENA+TNTEVLK M  A++++KAAH NMD
Sbjct: 67  ALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMD 126

Query: 394 VDKVHDVMDEIQEQQELAKEIADAVSNPVGFGHXXXXXXXXXXXXXXXXXXXXNALLDVG 573
           +DKV ++M +I EQQELA EI+ A+S PVGFG                       LL++ 
Sbjct: 127 IDKVDELMQDIAEQQELADEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEIS 186

Query: 574 GRNA---NTEPTLGLPSAP 621
           G         P++ +PS P
Sbjct: 187 GPETVPLPNVPSISIPSKP 205

>sp|Q6IQ73|CHM4C_BRARE Charged multivesicular body protein 4c (Chromatin modifying protein
           4c) (CHMP4c)
          Length = 224

 Score =  171 bits (433), Expect = 2e-42
 Identities = 88/144 (61%), Positives = 108/144 (75%)
 Frame = +1

Query: 58  GKKKKESETPQEAIQKLKGIQDMLLKKQDFLEKKIEQELSTAKKHGTXXXXXXXXXXXXX 237
           G K  +  TPQEAIQKL+  ++ML KKQDFLEKKI+ EL  AKK+GT             
Sbjct: 11  GGKGGKGPTPQEAIQKLRETEEMLAKKQDFLEKKIDAELLIAKKNGTKNKRAALQALKRK 70

Query: 238 XXYEKQLTQIDGTLTTVEFQVEALENASTNTEVLKAMQVASQSLKAAHQNMDVDKVHDVM 417
             YEKQL QIDGTL+T+EFQ EALENA+TNTEVLK M  A++++K AH+NMD+DKV D+M
Sbjct: 71  KRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKTAHENMDIDKVDDLM 130

Query: 418 DEIQEQQELAKEIADAVSNPVGFG 489
            +I EQQELA+EI+DA+S PVGFG
Sbjct: 131 QDITEQQELAQEISDAISRPVGFG 154

>sp|Q9BY43|CHM4A_HUMAN Charged multivesicular body protein 4a (Chromatin modifying protein
           4a) (CHMP4a) (Vacuolar protein sorting 7-1) (SNF7-1)
           (hSnf-1) (SNF7 homolog associated with Alix 2)
          Length = 222

 Score =  169 bits (427), Expect = 1e-41
 Identities = 92/194 (47%), Positives = 127/194 (65%), Gaps = 1/194 (0%)
 Frame = +1

Query: 55  FGKKKKES-ETPQEAIQKLKGIQDMLLKKQDFLEKKIEQELSTAKKHGTXXXXXXXXXXX 231
           FGK KKE   TP+EAIQKLK  + +L+KKQ+FLE+KI+QEL TAKK+GT           
Sbjct: 8   FGKGKKEKGPTPEEAIQKLKETEKILIKKQEFLEQKIQQELQTAKKYGTKNKRAALQALR 67

Query: 232 XXXXYEKQLTQIDGTLTTVEFQVEALENASTNTEVLKAMQVASQSLKAAHQNMDVDKVHD 411
               +E+QL Q DGTL+T+EFQ EA+ENA+TN EVL+ M++A+QS+K A+Q+MD+DKV +
Sbjct: 68  RKKRFEQQLAQTDGTLSTLEFQREAIENATTNAEVLRTMELAAQSMKKAYQDMDIDKVDE 127

Query: 412 VMDEIQEQQELAKEIADAVSNPVGFGHXXXXXXXXXXXXXXXXXXXXNALLDVGGRNANT 591
           +M +I EQQE+A++I+DA+S P+GF                        LL+VG +    
Sbjct: 128 LMTDITEQQEVAQQISDAISRPMGFRDDVDEDELLEELEELEQEELAQELLNVGDK--EE 185

Query: 592 EPTLGLPSAPQHEL 633
           EP++ LPS P   L
Sbjct: 186 EPSVKLPSVPSTHL 199

>sp|Q6GNN8|CHM4C_XENLA Charged multivesicular body protein 4c (Chromatin modifying protein
           4c) (CHMP4c)
          Length = 227

 Score =  163 bits (413), Expect = 5e-40
 Identities = 83/153 (54%), Positives = 111/153 (72%)
 Frame = +1

Query: 31  FKMSFASFFGKKKKESETPQEAIQKLKGIQDMLLKKQDFLEKKIEQELSTAKKHGTXXXX 210
           FK S  S    K ++  + QEA+ KL+  ++ML KKQ++LEKKIE EL+TAKKHGT    
Sbjct: 8   FKSSGGSGSSSKNRKGPSAQEALFKLRETEEMLTKKQEYLEKKIELELATAKKHGTKNKR 67

Query: 211 XXXXXXXXXXXYEKQLTQIDGTLTTVEFQVEALENASTNTEVLKAMQVASQSLKAAHQNM 390
                       EKQL QIDGTL+T+EFQ EALEN+ TNTEVLK M  A++++KAAH+NM
Sbjct: 68  AALQALKKKKRLEKQLAQIDGTLSTIEFQREALENSHTNTEVLKNMGYAAKAMKAAHENM 127

Query: 391 DVDKVHDVMDEIQEQQELAKEIADAVSNPVGFG 489
           D++K+ D+M +I EQQ++A+EI+DA+S PVGFG
Sbjct: 128 DLEKIDDLMQDIHEQQDVAQEISDAISRPVGFG 160

>sp|Q96CF2|CHM4C_HUMAN Charged multivesicular body protein 4c (Chromatin modifying protein
           4c) (CHMP4c) (Vacuolar protein sorting 7-3) (SNF7-3)
           (hSnf7-3) (SNF7 homolog associated with Alix 3)
          Length = 233

 Score =  148 bits (373), Expect = 2e-35
 Identities = 71/142 (50%), Positives = 106/142 (74%)
 Frame = +1

Query: 64  KKKESETPQEAIQKLKGIQDMLLKKQDFLEKKIEQELSTAKKHGTXXXXXXXXXXXXXXX 243
           K + + +PQEA+ +L+  ++ML KKQ++LE +I++E++ AKKHGT               
Sbjct: 15  KSRAAPSPQEALVRLRETEEMLGKKQEYLENRIQREIALAKKHGTQNKRAALQALKRKKR 74

Query: 244 YEKQLTQIDGTLTTVEFQVEALENASTNTEVLKAMQVASQSLKAAHQNMDVDKVHDVMDE 423
           +EKQLTQIDGTL+T+EFQ EALEN+ TNTEVL+ M  A++++K+ H+NMD++K+ D+M E
Sbjct: 75  FEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVHENMDLNKIDDLMQE 134

Query: 424 IQEQQELAKEIADAVSNPVGFG 489
           I EQQ++A+EI++A S  VGFG
Sbjct: 135 ITEQQDIAQEISEAFSQRVGFG 156

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,572,868
Number of Sequences: 369166
Number of extensions: 1136663
Number of successful extensions: 3209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3202
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7907893860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00554

  1. Dr_sW_014_G08
  2. Dr_sW_019_D04
  3. Dr_sW_008_A19
  4. Dr_sW_026_H16