Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_A19
(395 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6IQ73|CHM4C_BRARE Charged multivesicular body protein 4... 62 3e-10
sp|Q7ZVC4|CHM4B_BRARE Charged multivesicular body protein 4... 61 7e-10
sp|Q9H444|CHM4B_HUMAN Charged multivesicular body protein 4... 59 3e-09
sp|Q9BY43|CHM4A_HUMAN Charged multivesicular body protein 4... 59 3e-09
sp|Q9D8B3|CHM4B_MOUSE Charged multivesicular body protein 4... 59 3e-09
sp|Q5ZHP5|CHM4B_CHICK Charged multivesicular body protein 4... 59 3e-09
sp|P59074|CG301_HUMAN Hypothetical protein CGI-301 58 6e-09
sp|Q5XGW6|CHM4B_XENLA Charged multivesicular body protein 4... 58 6e-09
sp|Q6GL11|CHM4B_XENTR Charged multivesicular body protein 4... 58 8e-09
sp|Q6GNN8|CHM4C_XENLA Charged multivesicular body protein 4... 58 8e-09
>sp|Q6IQ73|CHM4C_BRARE Charged multivesicular body protein 4c (Chromatin modifying protein
4c) (CHMP4c)
Length = 224
Score = 62.4 bits (150), Expect = 3e-10
Identities = 27/38 (71%), Positives = 34/38 (89%)
Frame = +3
Query: 12 AHQNMDVDKVHDVMDEIQEQQELAKEIADAVSNPVGFG 125
AH+NMD+DKV D+M +I EQQELA+EI+DA+S PVGFG
Sbjct: 117 AHENMDIDKVDDLMQDITEQQELAQEISDAISRPVGFG 154
>sp|Q7ZVC4|CHM4B_BRARE Charged multivesicular body protein 4b (Chromatin modifying protein
4b) (CHMP4b)
Length = 220
Score = 61.2 bits (147), Expect = 7e-10
Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +3
Query: 12 AHQNMDVDKVHDVMDEIQEQQELAKEIADAVSNPVGFGHXXXXXXXXXXXXXXXXXXXXN 191
AH NMD+DKV ++M +I EQQELA+EI+DA+S PVGFG
Sbjct: 117 AHDNMDIDKVDELMQDIIEQQELAQEISDAISKPVGFGEEFDEDELLAELEELEQEELDK 176
Query: 192 ALLDVGGR-NANTEPTLGLPSAP 257
LL++G P+ LPS P
Sbjct: 177 NLLEIGDNVPLPNVPSTSLPSRP 199
>sp|Q9H444|CHM4B_HUMAN Charged multivesicular body protein 4b (Chromatin modifying protein
4b) (CHMP4b) (Vacuolar protein sorting 7-2) (SNF7-2)
(hSnf7-2) (SNF7 homolog associated with Alix 1) (hVps32)
Length = 224
Score = 59.3 bits (142), Expect = 3e-09
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Frame = +3
Query: 12 AHQNMDVDKVHDVMDEIQEQQELAKEIADAVSNPVGFGHXXXXXXXXXXXXXXXXXXXXN 191
AH NMD+DKV ++M +I +QQELA+EI+ A+S PVGFG
Sbjct: 119 AHDNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDK 178
Query: 192 ALLDVGGRNA---NTEPTLGLPSAP 257
LL++ G P++ LPS P
Sbjct: 179 NLLEISGPETVPLPNVPSIALPSKP 203
>sp|Q9BY43|CHM4A_HUMAN Charged multivesicular body protein 4a (Chromatin modifying protein
4a) (CHMP4a) (Vacuolar protein sorting 7-1) (SNF7-1)
(hSnf-1) (SNF7 homolog associated with Alix 2)
Length = 222
Score = 59.3 bits (142), Expect = 3e-09
Identities = 32/87 (36%), Positives = 49/87 (56%)
Frame = +3
Query: 9 RAHQNMDVDKVHDVMDEIQEQQELAKEIADAVSNPVGFGHXXXXXXXXXXXXXXXXXXXX 188
+A+Q+MD+DKV ++M +I EQQE+A++I+DA+S P+GF
Sbjct: 115 KAYQDMDIDKVDELMTDITEQQEVAQQISDAISRPMGFRDDVDEDELLEELEELEQEELA 174
Query: 189 NALLDVGGRNANTEPTLGLPSAPQHEL 269
LL+VG + EP++ LPS P L
Sbjct: 175 QELLNVGDK--EEEPSVKLPSVPSTHL 199
>sp|Q9D8B3|CHM4B_MOUSE Charged multivesicular body protein 4b (Chromatin modifying protein
4b) (CHMP4b)
Length = 224
Score = 58.9 bits (141), Expect = 3e-09
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Frame = +3
Query: 12 AHQNMDVDKVHDVMDEIQEQQELAKEIADAVSNPVGFGHXXXXXXXXXXXXXXXXXXXXN 191
AH NMD+DKV ++M +I +QQELA+EI+ A+S PVGFG
Sbjct: 119 AHDNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDK 178
Query: 192 ALLDVGGRNA---NTEPTLGLPSAP 257
LL++ G P++ LPS P
Sbjct: 179 NLLEISGPETVPLPNVPSVALPSKP 203
>sp|Q5ZHP5|CHM4B_CHICK Charged multivesicular body protein 4b (Chromatin modifying protein
4b) (CHMP4b)
Length = 227
Score = 58.9 bits (141), Expect = 3e-09
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Frame = +3
Query: 12 AHQNMDVDKVHDVMDEIQEQQELAKEIADAVSNPVGFGHXXXXXXXXXXXXXXXXXXXXN 191
AH NMD+DKV ++M +I EQQELA EI+ A+S PVGFG
Sbjct: 121 AHDNMDIDKVDELMQDIAEQQELADEISTAISKPVGFGEEFDEDELMAELEELEQEELDK 180
Query: 192 ALLDVGGRNA---NTEPTLGLPSAP 257
LL++ G P++ +PS P
Sbjct: 181 NLLEISGPETVPLPNVPSISIPSKP 205
>sp|P59074|CG301_HUMAN Hypothetical protein CGI-301
Length = 171
Score = 58.2 bits (139), Expect = 6e-09
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Frame = +3
Query: 12 AHQNMDVDKVHDVMDEIQEQQELAKEIADAVSNPVGFGHXXXXXXXXXXXXXXXXXXXXN 191
AH NMD+DKV ++M +I +QQEL +EI+ A+S PVGFG
Sbjct: 79 AHDNMDIDKVDELMQDIADQQELGEEISTAISKPVGFGEKSDEDELMAELEELEQEEPDK 138
Query: 192 ALLDVGGRNA---NTEPTLGLPSAP 257
LL+V G P++ LPS P
Sbjct: 139 NLLEVSGPETVPLPNVPSIALPSKP 163
>sp|Q5XGW6|CHM4B_XENLA Charged multivesicular body protein 4b (Chromatin modifying protein
4b) (CHMP4b)
Length = 222
Score = 58.2 bits (139), Expect = 6e-09
Identities = 33/86 (38%), Positives = 45/86 (52%)
Frame = +3
Query: 12 AHQNMDVDKVHDVMDEIQEQQELAKEIADAVSNPVGFGHXXXXXXXXXXXXXXXXXXXXN 191
AH NMD++KV ++M +I +QQELA+EI+DA+S PVGFG
Sbjct: 117 AHDNMDIEKVDELMQDIADQQELAQEISDAISKPVGFGEDFDEDELMAELEELEQEELDK 176
Query: 192 ALLDVGGRNANTEPTLGLPSAPQHEL 269
LL+V G T+ LP+ P L
Sbjct: 177 NLLEVQG-----PETVPLPNVPAASL 197
>sp|Q6GL11|CHM4B_XENTR Charged multivesicular body protein 4b (Chromatin modifying protein
4b) (CHMP4b)
Length = 222
Score = 57.8 bits (138), Expect = 8e-09
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +3
Query: 12 AHQNMDVDKVHDVMDEIQEQQELAKEIADAVSNPVGFGHXXXXXXXXXXXXXXXXXXXXN 191
AH NMD++KV ++M +I +QQELA+EI+DA+S PVGFG
Sbjct: 117 AHDNMDIEKVDELMQDIADQQELAQEISDAISKPVGFGEDFDEDELMAELEELEQEELDK 176
Query: 192 ALLDVGGRNANTEPTLGLPSA 254
LL+V G T P +P+A
Sbjct: 177 NLLEVQG--PETVPLPNVPAA 195
>sp|Q6GNN8|CHM4C_XENLA Charged multivesicular body protein 4c (Chromatin modifying protein
4c) (CHMP4c)
Length = 227
Score = 57.8 bits (138), Expect = 8e-09
Identities = 23/38 (60%), Positives = 34/38 (89%)
Frame = +3
Query: 12 AHQNMDVDKVHDVMDEIQEQQELAKEIADAVSNPVGFG 125
AH+NMD++K+ D+M +I EQQ++A+EI+DA+S PVGFG
Sbjct: 123 AHENMDLEKIDDLMQDIHEQQDVAQEISDAISRPVGFG 160
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,920,456
Number of Sequences: 369166
Number of extensions: 463144
Number of successful extensions: 876
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 68,354,980
effective HSP length: 97
effective length of database: 50,435,685
effective search space used: 1714813290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)