Planaria EST Database


DrC_00519

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00519
         (905 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q37376|NU2M_ACACA  NADH-ubiquinone oxidoreductase chain 2...    50   9e-06
sp|O99817|NU2M_RHISA  NADH-ubiquinone oxidoreductase chain 2...    48   4e-05
sp|P24499|ATP6_TRYBB  ATP synthase a chain (ATPase protein 6)      34   0.64 
sp|P48902|NU2M_ALBCO  NADH-ubiquinone oxidoreductase chain 2...    33   0.84 
sp|P15577|NU2M_PARTE  NADH-ubiquinone oxidoreductase chain 2...    32   1.9  
sp|P18931|NU4M_DROME  NADH-ubiquinone oxidoreductase chain 4...    32   1.9  
sp|P56911|NUON2_RHIME  NADH-quinone oxidoreductase chain N 2...    31   5.4  
sp|O47478|NU6M_LOLBL  NADH-ubiquinone oxidoreductase chain 6...    31   5.4  
sp|O24982|LNT_HELPY  Apolipoprotein N-acyltransferase (ALP N...    31   5.4  
sp|P26361|CFTR_MOUSE  Cystic fibrosis transmembrane conducta...    30   7.1  
>sp|Q37376|NU2M_ACACA NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit 2)
          Length = 527

 Score = 50.1 bits (118), Expect = 9e-06
 Identities = 68/285 (23%), Positives = 109/285 (38%), Gaps = 28/285 (9%)
 Frame = +2

Query: 107  IIHYFGGLSYNINSLF----YILAVLL-SDILVMSGFIVVSFDYLFFGFMLKLSFFPFLW 271
            I  + G LSY   +LF    Y+   +L S     SGF++  F  L  GF+ KL   PF  
Sbjct: 212  IYGFTGLLSYTDLTLFLSEVYVTNFILDSSFFSFSGFLI-GFLLLTVGFLFKLGSAPFHM 270

Query: 272  LVPNLFLGMSYWLIGFLVFFHKAVIVXXXXXXXXXXXXXHVFLILLSIF-VSRLYLILNK 448
             +P+++ G    +  +L    K  ++              VFL    +F ++ L+ IL  
Sbjct: 271  WMPDVYEGSPLLITAYLSTLPKISLIFVIFKLYYYVFF-EVFLFSQGLFTLTALFSILLG 329

Query: 449  DC-------LKSLIIWSSNIHCGXXXXXXXXXXXXVFGYMLIYLIFGIAFLIYLCYSF-- 601
                     LK ++ +S   + G                 + YLI  I  +I L + F  
Sbjct: 330  SIAAIYQVKLKRMLTYSMITNTGYLLLGLSFGDISGIYITIFYLISYIFIMIGLFFCFLS 389

Query: 602  -----------EYNYFSDVVGLDNGYGXXXXXXXXXXCRFPPMLG*VLKFTVYSTILKYT 748
                         N FS+++ ++                 PP+LG   KF ++   LKY 
Sbjct: 390  LRDRSSGLLVKRINLFSNLLEVNPSLSFSIFILLFSIAGIPPLLGFYSKFFLFLFSLKYK 449

Query: 749  ILFFLILVNLFSTFGYLVVLRSFFVLLPY*NHFK--IYFYSLPFI 877
            + +  IL  +FS       +R   V L Y N     I+ Y +PF+
Sbjct: 450  MYWMTILFVIFSVVSVFYYIR--LVKLMYFNRTTGWIFLYDIPFL 492
>sp|O99817|NU2M_RHISA NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
           2)
          Length = 313

 Score = 47.8 bits (112), Expect = 4e-05
 Identities = 50/256 (19%), Positives = 97/256 (37%), Gaps = 11/256 (4%)
 Frame = +2

Query: 92  ISLFAIIHYFGGLSYNINSLFYILAVLLSDILVMSGFIVVSFDYLFFGFMLKLSFFPFLW 271
           +S   I++ F   +YN    ++I+    S +     F + SF Y  F   L  S      
Sbjct: 31  MSFIPIMNDFKMKNYNSMITYFIIQSFSSSL-----FFISSFQYSLFNMELFFSLINISV 85

Query: 272 LVPNLFLGMSYWLIGF---LVFFHKAVIVXXXXXXXXXXXXXHVFLILLSIFVSRLYL-- 436
           L+    +   +WLI     L F+   +++              +  +++ +F+    L  
Sbjct: 86  LIKLGMIPFHFWLIMISESLTFYSLLILLTIQKIIPLLIIEKFMNSLMIPLFIMSSLLAS 145

Query: 437 --ILNKDCLKSLIIWSSNIHCGXXXXXXXXXXXXVFGYMLIYLIFGIAFLIYLCYSFEYN 610
              +    +K ++I+SS  H G               Y+++Y I  I  +I  C    +N
Sbjct: 146 IMAMKYKLIKQILIFSSISHQGWILCLIAKKMNFWVSYLMLYSII-IYSIIINCKEMNFN 204

Query: 611 YFSDVV--GLDNGYGXXXXXXXXXXCRFPPMLG*VLKFTVYSTILKYTILFFLILV--NL 778
              D+    + +                PP +G  +K      ++K  ++F +IL+  +L
Sbjct: 205 KLCDLTKKKISSKMKNTMIMSMMSLAGMPPFIGFFMKIMAIFFLMKMNLIFMMILIISSL 264

Query: 779 FSTFGYLVVLRSFFVL 826
            + F YL +L   F +
Sbjct: 265 INLFFYLRILTPLFFI 280
>sp|P24499|ATP6_TRYBB ATP synthase a chain (ATPase protein 6)
          Length = 229

 Score = 33.9 bits (76), Expect = 0.64
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
 Frame = +2

Query: 542 YMLIYLIFGIAFLIYLCYSFEYNYFSDVVGLDNGYGXXXXXXXXXXCRFPPMLG*VLKF- 718
           Y+ +YL+F I FL+Y+ + F + +  D   L N              RF      +L F 
Sbjct: 78  YLNLYLLFCIVFLLYIAFLFLFCFLCDFF-LFNNLLVGDSFMDVFFIRF------LLCFL 130

Query: 719 TVYSTILKYTILFFLILVNLFSTFGYLVVLRSFFVLLPY*NHFKIYFYSLPFIIVF 886
             +S + +    F  +  NL S+   L++   FF  +     + ++ Y + FI VF
Sbjct: 131 ECFSLLCRCLSTFLRLFCNLLSSHFLLLMFFDFFYFIFVFFFYGVFCYFILFIFVF 186
>sp|P48902|NU2M_ALBCO NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
           2)
          Length = 307

 Score = 33.5 bits (75), Expect = 0.84
 Identities = 54/286 (18%), Positives = 110/286 (38%), Gaps = 19/286 (6%)
 Frame = +2

Query: 92  ISLFAIIHYFGGLSYNINS----LFYILAVLLSDILVMSGFIVV-----SFDYLFFGF-- 238
           ISL   + Y+  +   ++     +++++  + S +++++G  +      S+ YLF     
Sbjct: 34  ISLLGFVSYYMLMKKIMSGEGIMMYFLIQSVSSTVMLLNGLYIFVNHASSYIYLFIFITM 93

Query: 239 -MLKLSFFPF-LWLVPNLFLGMSYWLIGFLVFFHKAVIVXXXXXXXXXXXXXHVFLILLS 412
            MLK+  FP   W++P ++  +SY  IG +    K V +                + +LS
Sbjct: 94  LMLKIGMFPLHFWIIP-VYSKLSYLNIGIVGLLLKIVPMWILMHMGCITSEMLNLITMLS 152

Query: 413 IFVSRLYLILNKDCLKSLIIWSSNIHCGXXXXXXXXXXXXVFGYMLIYLIFGIAFLIYLC 592
           +       ++  +  K  ++  ++                +F Y + Y    +  L++L 
Sbjct: 153 VTSMLFGALIGMNLSKMRMVLGASTITHNGWLGMSCISGSLFKYFITYGFSLVILLVFLY 212

Query: 593 YSFEYNYFSDVVGLDNGYGXXXXXXXXXXCRFPPMLG*VLKFTV----YSTILKYTILFF 760
              + +    ++ L                  PP +  + K  V      T L + +L F
Sbjct: 213 LGDKMSISLSLLSLSG---------------LPPFMLFIGKINVLLMMMETNLWFIVLVF 257

Query: 761 LILVNLFSTFGYLVVLRSFFVLLP--Y*NHFKIYFYSLPFIIVFFG 892
            IL  + S   YL     FF+ +   Y  H+K+  + L  + V FG
Sbjct: 258 AILSAVISLVYYLKFSVMFFMNMKNNYLKHYKMAMFLL--VNVTFG 301
>sp|P15577|NU2M_PARTE NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
           2)
          Length = 193

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
 Frame = +2

Query: 689 PPMLG*VLKFTVYSTILKYTILFFLIL---VNLFSTFGYLVVLRSFF-----VLLPY*NH 844
           PP+LG  LKF ++  +   T L F+++    N+ + F YL  ++SF       +L   N 
Sbjct: 96  PPLLGFFLKFLIFFFLFFKTNLAFILIFLGFNMATLFFYLSTVKSFVNRKQASVLNSFNF 155

Query: 845 F------KIYFYSLPFIIVFFG*FLL 904
           F       +YF++  +  +FF  F L
Sbjct: 156 FIRAELSFLYFFNFFYFFLFFAFFFL 181
>sp|P18931|NU4M_DROME NADH-ubiquinone oxidoreductase chain 4 (NADH dehydrogenase subunit
           4)
          Length = 446

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
 Frame = +2

Query: 239 MLKLSFFPFLWLVPNLFLGMSYWLIGFLVFFHKAVIVXXXXXXXXXXXXXHVF------- 397
           MLK+ FF  L+L+P  F+   YW++  ++FF   + +             +         
Sbjct: 1   MLKIIFF-LLFLIPFCFINNMYWMVQIMMFFISFIFLLMNNFMNYWSEISYFLGCDMLSY 59

Query: 398 -LILLSIFVSRLYLILNK 448
            LILLS+++  L L+ ++
Sbjct: 60  GLILLSLWICSLMLLASE 77
>sp|P56911|NUON2_RHIME NADH-quinone oxidoreductase chain N 2 (NADH dehydrogenase I, chain
           N 2) (NDH-1, chain N 2)
          Length = 479

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 45/231 (19%), Positives = 87/231 (37%), Gaps = 21/231 (9%)
 Frame = +2

Query: 203 IVVSFDYLFFGFMLKLSFFPFLWLVPNLFLGMSYWLIGFLVFFHKAV--IVXXXXXXXXX 376
           ++++  ++  G + K+   PF   VP+++ G    +  F+    KA    V         
Sbjct: 206 LLLAVVFIVAGLVFKIGAVPFHMWVPDVYEGAPTTITAFMSVAPKAAGFAVILRVFLNPL 265

Query: 377 XXXXHVFLILLSIFVSRL----YLILNKDCLKSLIIWSSNIHCG----XXXXXXXXXXXX 532
               + ++I+ +I V+ +    ++ L +D  K L+ +SS  H G                
Sbjct: 266 VEASNAWIIVAAIAVATMALGSFVALVQDNFKRLLAYSSIAHAGFAIFGVVAGGQDGIAS 325

Query: 533 VFGYMLIYL-----IFGIAFLIYLCYSFEYNYFSDVVGLDN---GYGXXXXXXXXXXCRF 688
           V  Y+LIY      IFG A ++     F      D  G      G               
Sbjct: 326 VMLYLLIYTFMNLGIFG-AVIMMRNGDFSGEVIEDYAGFAKFHPGLALLMLLYLFSLAGI 384

Query: 689 PPMLG*VLKFTVYSTILK---YTILFFLILVNLFSTFGYLVVLRSFFVLLP 832
           PP  G   KF V   +++     +    +L+++ S + Y+ ++   ++  P
Sbjct: 385 PPTAGFFAKFYVLVALVERGFVALAVIAVLLSVVSAYFYIRIVMVIYMREP 435
>sp|O47478|NU6M_LOLBL NADH-ubiquinone oxidoreductase chain 6 (NADH dehydrogenase subunit
           6)
          Length = 168

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 22/100 (22%), Positives = 45/100 (45%)
 Frame = +2

Query: 116 YFGGLSYNINSLFYILAVLLSDILVMSGFIVVSFDYLFFGFMLKLSFFPFLWLVPNLFLG 295
           Y GG+      +F  +  L+ +++ +S  +   F ++FFGFM+ ++FF    LV      
Sbjct: 57  YVGGMLV----MFMYVISLIPNLIFLSNKVFAYFFFIFFGFMM-MNFFVMKELVSVEVKS 111

Query: 296 MSYWLIGFLVFFHKAVIVXXXXXXXXXXXXXHVFLILLSI 415
           MS +  G++      +I+              +  +L+S+
Sbjct: 112 MSLFDYGYMSMGGSGIIMLYDNFFCYVLLAVILLFVLISV 151
>sp|O24982|LNT_HELPY Apolipoprotein N-acyltransferase (ALP N-acyltransferase)
          Length = 425

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
 Frame = +2

Query: 104 AIIHYFGGLSYNINSLFYILAVLLSDILVMSGFIVVSFDYLFFGFMLKLSF--------F 259
           A++ Y+  LS+  +   Y+L +++  I ++ G +     Y    +   LSF        F
Sbjct: 70  ALLFYWCALSFRYSDFTYLLPLIIVLIALVYGVLFYLLLYFENPYFRLLSFLGSSFIHPF 129

Query: 260 PFLWLVPNLFLGMSYWLI 313
            F WLVP+ F   S + +
Sbjct: 130 GFDWLVPDSFFSYSVFRV 147
>sp|P26361|CFTR_MOUSE Cystic fibrosis transmembrane conductance regulator (CFTR)
           (cAMP-dependent chloride channel)
          Length = 1476

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +2

Query: 716 FTVYSTILKYTILFFLILVNLFSTFGYLVVLR 811
           F V+ ++L YT++  ++L  +F+T  + +VLR
Sbjct: 316 FVVFLSVLPYTVINGIVLRKIFTTISFCIVLR 347
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,411,572
Number of Sequences: 369166
Number of extensions: 1061026
Number of successful extensions: 3346
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3334
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9174518830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00519

  1. Dr_sW_008_P14
  2. Dr_sW_013_J16
  3. Dr_sW_027_E18
  4. Dr_sW_026_C02
  5. Dr_sW_005_B16