Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_P14
(644 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q37376|NU2M_ACACA NADH-ubiquinone oxidoreductase chain 2... 35 0.13
sp|P24499|ATP6_TRYBB ATP synthase a chain (ATPase protein 6) 34 0.37
sp|P15577|NU2M_PARTE NADH-ubiquinone oxidoreductase chain 2... 31 3.1
sp|P26361|CFTR_MOUSE Cystic fibrosis transmembrane conducta... 30 4.1
sp|P05513|NU1M_PARTE NADH-ubiquinone oxidoreductase chain 1... 30 7.0
sp|P35071|CFTR_BOVIN Cystic fibrosis transmembrane conducta... 29 9.1
sp|Q36424|NU4M_LOCMI NADH-ubiquinone oxidoreductase chain 4... 29 9.1
sp|P54129|SRG7_CAEEL Serpentine receptor class gamma-7 (Pro... 29 9.1
sp|Q9Z7F1|Y755_CHLPN Hypothetical UPF0242 protein CPn0755/C... 29 9.1
sp|Q00555|CFTR_SHEEP Cystic fibrosis transmembrane conducta... 29 9.1
>sp|Q37376|NU2M_ACACA NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 527
Score = 35.4 bits (80), Expect = 0.13
Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 15/125 (12%)
Frame = +3
Query: 294 LIYLIFGIAFLIYLCYSF-------------EYNYFSDVVGLDNGYGXXXXXXXXXXCRF 434
+ YLI I +I L + F N FS+++ ++
Sbjct: 370 IFYLISYIFIMIGLFFCFLSLRDRSSGLLVKRINLFSNLLEVNPSLSFSIFILLFSIAGI 429
Query: 435 PPMLG*VLKFTVYSTILKYTILFFLILVNLFSTFGYLVVLRSFFVLLPY*NHFK--IYFY 608
PP+LG KF ++ LKY + + IL +FS +R V L Y N I+ Y
Sbjct: 430 PPLLGFYSKFFLFLFSLKYKMYWMTILFVIFSVVSVFYYIR--LVKLMYFNRTTGWIFLY 487
Query: 609 SLPFI 623
+PF+
Sbjct: 488 DIPFL 492
>sp|P24499|ATP6_TRYBB ATP synthase a chain (ATPase protein 6)
Length = 229
Score = 33.9 bits (76), Expect = 0.37
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Frame = +3
Query: 288 YMLIYLIFGIAFLIYLCYSFEYNYFSDVVGLDNGYGXXXXXXXXXXCRFPPMLG*VLKF- 464
Y+ +YL+F I FL+Y+ + F + + D L N RF +L F
Sbjct: 78 YLNLYLLFCIVFLLYIAFLFLFCFLCDFF-LFNNLLVGDSFMDVFFIRF------LLCFL 130
Query: 465 TVYSTILKYTILFFLILVNLFSTFGYLVVLRSFFVLLPY*NHFKIYFYSLPFIIVF 632
+S + + F + NL S+ L++ FF + + ++ Y + FI VF
Sbjct: 131 ECFSLLCRCLSTFLRLFCNLLSSHFLLLMFFDFFYFIFVFFFYGVFCYFILFIFVF 186
>sp|P15577|NU2M_PARTE NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 193
Score = 30.8 bits (68), Expect = 3.1
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 14/84 (16%)
Frame = +3
Query: 435 PPMLG*VLKFTVYSTILKYTILFFLIL---VNLFSTFGYLVVLRSFF-----VLLPY*NH 590
PP+LG LKF ++ + T L F+++ N+ + F YL ++SF +L N
Sbjct: 96 PPLLGFFLKFLIFFFLFFKTNLAFILIFLGFNMATLFFYLSTVKSFVNRKQASVLNSFNF 155
Query: 591 F------KIYFYSLPFIIVFFG*F 644
F +YF++ + +FF F
Sbjct: 156 FIRAELSFLYFFNFFYFFLFFAFF 179
>sp|P26361|CFTR_MOUSE Cystic fibrosis transmembrane conductance regulator (CFTR)
(cAMP-dependent chloride channel)
Length = 1476
Score = 30.4 bits (67), Expect = 4.1
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +3
Query: 462 FTVYSTILKYTILFFLILVNLFSTFGYLVVLR 557
F V+ ++L YT++ ++L +F+T + +VLR
Sbjct: 316 FVVFLSVLPYTVINGIVLRKIFTTISFCIVLR 347
>sp|P05513|NU1M_PARTE NADH-ubiquinone oxidoreductase chain 1 (NADH dehydrogenase subunit
1)
Length = 261
Score = 29.6 bits (65), Expect = 7.0
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 21/80 (26%)
Frame = +3
Query: 462 FTVYSTILKYTILFFLILVNLFSTF--------------------GYLVVLRSFFVLLPY 581
F VY I LFF +L N+ F GY F+ L Y
Sbjct: 166 FAVYQEIFWLIFLFFFLLSNILLVFLLEVNRTPFDLAEAESELVTGYTTEYGGFYFALFY 225
Query: 582 *N-HFKIYFYSLPFIIVFFG 638
+F ++F+S +VFFG
Sbjct: 226 LGEYFHLFFFSCLISVVFFG 245
>sp|P35071|CFTR_BOVIN Cystic fibrosis transmembrane conductance regulator (CFTR)
(cAMP-dependent chloride channel)
Length = 1481
Score = 29.3 bits (64), Expect = 9.1
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 462 FTVYSTILKYTILFFLILVNLFSTFGYLVVLR 557
F V+ ++L Y +L +IL +F+T + +VLR
Sbjct: 316 FVVFLSVLPYALLKGIILRKIFTTISFCIVLR 347
>sp|Q36424|NU4M_LOCMI NADH-ubiquinone oxidoreductase chain 4 (NADH dehydrogenase subunit
4)
Length = 444
Score = 29.3 bits (64), Expect = 9.1
Identities = 45/204 (22%), Positives = 78/204 (38%), Gaps = 14/204 (6%)
Frame = +3
Query: 3 FPFLWLVPNLFLGMSYWLIGFLVFFHKAVIVXXXXXXXXXXXXXHVF--------LILLS 158
F ++L+P LG +WL+ L+F + + + F LILLS
Sbjct: 6 FMIIFLIPICLLGNCWWLVHSLIFLLSFIFMISLYSYSDLSMISYYFGVDFYSFMLILLS 65
Query: 159 IFVSRLYLILNKDCLKSLIIWSSNIHCGXXXXXXXXXXXXVFGYMLIYLIFGIAFLIYLC 338
+++ L + + I+SS+ H VF +L+ ++ +F
Sbjct: 66 LWICCLMITASSS------IYSSSYH----------PNFFVFVVLLLLIMLFCSFSSLNL 109
Query: 339 YSFEYNYFSDVVG---LDNGYGXXXXXXXXXXCRFPPMLG*VLKFTVYSTILKYTILFFL 509
+SF + S +V L G+G P L + Y+ + +L L
Sbjct: 110 FSFYIFFESSLVPTLFLILGWGYQ-----------PERLQAGVYLMFYTLVASLPLLLVL 158
Query: 510 ILVN-LFSTFGY--LVVLRSFFVL 572
+N LF+T Y L+ SF+ L
Sbjct: 159 FSINDLFNTLYYPLLIDFGSFYFL 182
>sp|P54129|SRG7_CAEEL Serpentine receptor class gamma-7 (Protein srg-7)
Length = 339
Score = 29.3 bits (64), Expect = 9.1
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +3
Query: 12 LWLVPNLFLGMSYWLIGFLVFFHKAVIVXXXXXXXXXXXXXHVFLILLSIFVSRLYLILN 191
LWL+P LFL + W+I + + + LILL +FV RL+L
Sbjct: 35 LWLIPTLFLLV--WIIITTRVRYPSQYSNLPYWILTADCVVSIILILLDLFVVRLFLYFP 92
Query: 192 KDCLK 206
+ C K
Sbjct: 93 QLCSK 97
>sp|Q9Z7F1|Y755_CHLPN Hypothetical UPF0242 protein CPn0755/CP1117/CPj0755/CpB0783
Length = 401
Score = 29.3 bits (64), Expect = 9.1
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +2
Query: 377 FRQWLWFLVMISIFILL*ISPNVRLSLKVYSLFNYFKIYYIVFF 508
F+ W++FL ++++ + L P + +S K+Y F + I + +F
Sbjct: 12 FKYWIYFLPVVTLLLPLVCYPFLSISQKIYGYFVFTTISSLGWF 55
>sp|Q00555|CFTR_SHEEP Cystic fibrosis transmembrane conductance regulator (CFTR)
(cAMP-dependent chloride channel)
Length = 1481
Score = 29.3 bits (64), Expect = 9.1
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 462 FTVYSTILKYTILFFLILVNLFSTFGYLVVLR 557
F V+ ++L Y +L +IL +F+T + +VLR
Sbjct: 316 FVVFLSVLPYALLKGIILRKIFTTISFCIVLR 347
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,070,116
Number of Sequences: 369166
Number of extensions: 794291
Number of successful extensions: 2421
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2415
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5267491560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)