Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_C02
(328 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q37376|NU2M_ACACA NADH-ubiquinone oxidoreductase chain 2... 35 0.069
sp|P15577|NU2M_PARTE NADH-ubiquinone oxidoreductase chain 2... 32 0.34
sp|P26361|CFTR_MOUSE Cystic fibrosis transmembrane conducta... 30 1.3
sp|P05513|NU1M_PARTE NADH-ubiquinone oxidoreductase chain 1... 30 2.2
sp|P35071|CFTR_BOVIN Cystic fibrosis transmembrane conducta... 29 2.9
sp|Q9Z7F1|Y755_CHLPN Hypothetical UPF0242 protein CPn0755/C... 29 2.9
sp|Q00555|CFTR_SHEEP Cystic fibrosis transmembrane conducta... 29 2.9
sp|P12771|NU2M_PARLI NADH-ubiquinone oxidoreductase chain 2... 29 3.8
sp|Q19473|SRD51_CAEEL Serpentine receptor class delta-51 (P... 29 3.8
sp|P13569|CFTR_HUMAN Cystic fibrosis transmembrane conducta... 28 4.9
>sp|Q37376|NU2M_ACACA NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 527
Score = 34.7 bits (78), Expect = 0.069
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Frame = -1
Query: 298 NYFSDVVGLDNGYGXXXXXXXXXFCRFPPMLG*VLKFTVYSTILKYTILFFLILVNLFST 119
N FS+++ ++ PP+LG KF ++ LKY + + IL +FS
Sbjct: 403 NLFSNLLEVNPSLSFSIFILLFSIAGIPPLLGFYSKFFLFLFSLKYKMYWMTILFVIFSV 462
Query: 118 FGYLVVLRSFFVLLPY*NHFK--IYFYSLPFI 29
+R V L Y N I+ Y +PF+
Sbjct: 463 VSVFYYIR--LVKLMYFNRTTGWIFLYDIPFL 492
>sp|P15577|NU2M_PARTE NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 193
Score = 32.3 bits (72), Expect = 0.34
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Frame = -1
Query: 217 PPMLG*VLKFTVYSTILKYTILFFLIL---VNLFSTFGYLVVLRSFF-----VLLPY*NH 62
PP+LG LKF ++ + T L F+++ N+ + F YL ++SF +L N
Sbjct: 96 PPLLGFFLKFLIFFFLFFKTNLAFILIFLGFNMATLFFYLSTVKSFVNRKQASVLNSFNF 155
Query: 61 F------KIYFYSLPFIIVFFG*FLL 2
F +YF++ + +FF F L
Sbjct: 156 FIRAELSFLYFFNFFYFFLFFAFFFL 181
>sp|P26361|CFTR_MOUSE Cystic fibrosis transmembrane conductance regulator (CFTR)
(cAMP-dependent chloride channel)
Length = 1476
Score = 30.4 bits (67), Expect = 1.3
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = -1
Query: 190 FTVYSTILKYTILFFLILVNLFSTFGYLVVLR 95
F V+ ++L YT++ ++L +F+T + +VLR
Sbjct: 316 FVVFLSVLPYTVINGIVLRKIFTTISFCIVLR 347
>sp|P05513|NU1M_PARTE NADH-ubiquinone oxidoreductase chain 1 (NADH dehydrogenase subunit
1)
Length = 261
Score = 29.6 bits (65), Expect = 2.2
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 21/80 (26%)
Frame = -1
Query: 190 FTVYSTILKYTILFFLILVNLFSTF--------------------GYLVVLRSFFVLLPY 71
F VY I LFF +L N+ F GY F+ L Y
Sbjct: 166 FAVYQEIFWLIFLFFFLLSNILLVFLLEVNRTPFDLAEAESELVTGYTTEYGGFYFALFY 225
Query: 70 *N-HFKIYFYSLPFIIVFFG 14
+F ++F+S +VFFG
Sbjct: 226 LGEYFHLFFFSCLISVVFFG 245
>sp|P35071|CFTR_BOVIN Cystic fibrosis transmembrane conductance regulator (CFTR)
(cAMP-dependent chloride channel)
Length = 1481
Score = 29.3 bits (64), Expect = 2.9
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -1
Query: 190 FTVYSTILKYTILFFLILVNLFSTFGYLVVLR 95
F V+ ++L Y +L +IL +F+T + +VLR
Sbjct: 316 FVVFLSVLPYALLKGIILRKIFTTISFCIVLR 347
>sp|Q9Z7F1|Y755_CHLPN Hypothetical UPF0242 protein CPn0755/CP1117/CPj0755/CpB0783
Length = 401
Score = 29.3 bits (64), Expect = 2.9
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = -3
Query: 275 FRQWLWFLVMISIFILL*ISPNVRLSLKVYSLFNYFKIYYIVFF 144
F+ W++FL ++++ + L P + +S K+Y F + I + +F
Sbjct: 12 FKYWIYFLPVVTLLLPLVCYPFLSISQKIYGYFVFTTISSLGWF 55
>sp|Q00555|CFTR_SHEEP Cystic fibrosis transmembrane conductance regulator (CFTR)
(cAMP-dependent chloride channel)
Length = 1481
Score = 29.3 bits (64), Expect = 2.9
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -1
Query: 190 FTVYSTILKYTILFFLILVNLFSTFGYLVVLR 95
F V+ ++L Y +L +IL +F+T + +VLR
Sbjct: 316 FVVFLSVLPYALLKGIILRKIFTTISFCIVLR 347
>sp|P12771|NU2M_PARLI NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 352
Score = 28.9 bits (63), Expect = 3.8
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = -1
Query: 217 PPMLG*VLKFTVYSTILKYTILFF---LILVNLFSTFGYL-VVLRSFFVLLP 74
PP+ G +LKF+ +++ +FF +I+ +L S F YL + + +L P
Sbjct: 255 PPLTGFILKFSSLYSLINNGFIFFSSVMIIGSLLSLFFYLRIAFNTTLILFP 306
>sp|Q19473|SRD51_CAEEL Serpentine receptor class delta-51 (Protein srd-51)
Length = 336
Score = 28.9 bits (63), Expect = 3.8
Identities = 13/41 (31%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = -1
Query: 190 FTVYSTILKYTILFFLILVNLFSTF-GYLVVLRSFFVLLPY 71
+ +YS + ++ L+F L+N+F +F ++ L +F+ +LPY
Sbjct: 255 YFLYSQLSGHSNLYFEYLLNIFGSFTAFINPLLTFYFVLPY 295
>sp|P13569|CFTR_HUMAN Cystic fibrosis transmembrane conductance regulator (CFTR)
(cAMP-dependent chloride channel)
Length = 1480
Score = 28.5 bits (62), Expect = 4.9
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -1
Query: 190 FTVYSTILKYTILFFLILVNLFSTFGYLVVLR 95
F V+ ++L Y ++ +IL +F+T + +VLR
Sbjct: 316 FVVFLSVLPYALIKGIILRKIFTTISFCIVLR 347
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,747,213
Number of Sequences: 369166
Number of extensions: 452626
Number of successful extensions: 1326
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 68,354,980
effective HSP length: 77
effective length of database: 54,130,385
effective search space used: 1678041935
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)