Planaria EST Database

DrC_00503

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00503
         (756 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7ZW25|CHM2A_BRARE  Charged multivesicular body protein 2...   232   9e-61
sp|Q6DFS6|CHM2A_XENTR  Charged multivesicular body protein 2...   231   2e-60
sp|Q6IP52|CHM2A_XENLA  Charged multivesicular body protein 2...   230   3e-60
sp|Q9DB34|CHM2A_MOUSE  Charged multivesicular body protein 2...   228   1e-59
sp|O43633|CHM2A_HUMAN  Charged multivesicular body protein 2...   228   1e-59
sp|Q5ZHN1|CHM2A_CHICK  Charged multivesicular body protein 2...   218   1e-56
sp|O14177|YDS1_SCHPO  Hypothetical protein C4F8.01 in chromo...   141   2e-33
sp|Q6NXD2|CHM2B_BRARE  Charged multivesicular body protein 2...   115   2e-25
sp|Q5F3A2|CHM2B_CHICK  Charged multivesicular body protein 2...   112   1e-24
sp|Q9UQN3|CHM2B_HUMAN  Charged multivesicular body protein 2...   111   2e-24

>sp|Q7ZW25|CHM2A_BRARE Charged multivesicular body protein 2a (Chromatin modifying protein
           2a) (CHMP2a)
          Length = 220

 Score =  232 bits (591), Expect = 9e-61
 Identities = 115/177 (64%), Positives = 144/177 (81%)
 Frame = +2

Query: 2   MKENQRALNKTIRELEREKSRLENEEKKVINDIKKMAKQGQMDAVKIMAKDLVRTRNYVK 181
           +++NQRALN+ +R+L+RE+ RLE +EKK+I DIKKMAKQGQMDAVKIMAKDLVRTR YVK
Sbjct: 15  LRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVK 74

Query: 182 KFILMKANIQAVSLKIQTLRSTNAMAQAMKGVTRTMQRMNKSMNLPQLQKIMMEFERESN 361
           KFI+M+ANIQAVSLKIQTL+S N+MAQAMKGVT+ M  MN+ + LPQ+QKIMMEFER+S 
Sbjct: 75  KFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFERQSE 134

Query: 362 IMEMKEEMMTDTIDDALXXXXXXXXXXKLVQQVLDELGIEIADTLSNIDPSKDSIGI 532
           IM+MKEEMM D IDDA+           +V QVLDELG+ ++D LSN+  +  S+ +
Sbjct: 135 IMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLSDELSNLPATGGSLSV 191

>sp|Q6DFS6|CHM2A_XENTR Charged multivesicular body protein 2a (Chromatin modifying protein
           2a) (CHMP2a)
          Length = 220

 Score =  231 bits (588), Expect = 2e-60
 Identities = 114/177 (64%), Positives = 143/177 (80%)
 Frame = +2

Query: 2   MKENQRALNKTIRELEREKSRLENEEKKVINDIKKMAKQGQMDAVKIMAKDLVRTRNYVK 181
           +++NQRALNK +RE++RE+ +LE +EKK+I DIKKMAKQGQMDAVKIMAKDLVRTR YVK
Sbjct: 15  LRQNQRALNKAMREMDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVK 74

Query: 182 KFILMKANIQAVSLKIQTLRSTNAMAQAMKGVTRTMQRMNKSMNLPQLQKIMMEFERESN 361
           KFI+M+ANIQAVSLKIQTL+S N+MAQAMKGVT+ M  MN+ + LPQ+QKIMMEFE++S 
Sbjct: 75  KFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSE 134

Query: 362 IMEMKEEMMTDTIDDALXXXXXXXXXXKLVQQVLDELGIEIADTLSNIDPSKDSIGI 532
           IM+MKEEMM D IDDA+           +V QVLDELG+ + D LSN+  +  S+ +
Sbjct: 135 IMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELSNLPSTGGSLSV 191

>sp|Q6IP52|CHM2A_XENLA Charged multivesicular body protein 2a (Chromatin modifying protein
           2a) (CHMP2a)
          Length = 220

 Score =  230 bits (587), Expect = 3e-60
 Identities = 114/177 (64%), Positives = 143/177 (80%)
 Frame = +2

Query: 2   MKENQRALNKTIRELEREKSRLENEEKKVINDIKKMAKQGQMDAVKIMAKDLVRTRNYVK 181
           +++NQRALN+ +REL+RE+ +LE +EKK+I DIKKMAKQGQMDAVKIMAKDLVRTR YVK
Sbjct: 15  LRQNQRALNRAMRELDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVK 74

Query: 182 KFILMKANIQAVSLKIQTLRSTNAMAQAMKGVTRTMQRMNKSMNLPQLQKIMMEFERESN 361
           KFI+M+ANIQAVSLKIQTL+S N+MAQAMKGVT+ M  MN+ + LPQ+QKIMMEFE++S 
Sbjct: 75  KFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSE 134

Query: 362 IMEMKEEMMTDTIDDALXXXXXXXXXXKLVQQVLDELGIEIADTLSNIDPSKDSIGI 532
           IM+MKEEMM D IDDA+           +V QVLDELG+ + D LSN+  +  S+ +
Sbjct: 135 IMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELSNLPSTGGSLSV 191

>sp|Q9DB34|CHM2A_MOUSE Charged multivesicular body protein 2a (Chromatin modifying protein
           2a) (CHMP2a) (Vacuolar protein sorting 2) (mVps2)
          Length = 222

 Score =  228 bits (582), Expect = 1e-59
 Identities = 112/177 (63%), Positives = 143/177 (80%)
 Frame = +2

Query: 2   MKENQRALNKTIRELEREKSRLENEEKKVINDIKKMAKQGQMDAVKIMAKDLVRTRNYVK 181
           +++NQRALN+ +REL+RE+ +LE +EKK+I DIKKMAKQGQMDAV+IMAKDLVRTR YV+
Sbjct: 15  LRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVR 74

Query: 182 KFILMKANIQAVSLKIQTLRSTNAMAQAMKGVTRTMQRMNKSMNLPQLQKIMMEFERESN 361
           KF+LM+ANIQAVSLKIQTL+S N+MAQAMKGVT+ M  MN+ + LPQ+QKIMMEFER++ 
Sbjct: 75  KFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAE 134

Query: 362 IMEMKEEMMTDTIDDALXXXXXXXXXXKLVQQVLDELGIEIADTLSNIDPSKDSIGI 532
           IM+MKEEMM D IDDA+           +V QVLDELG+ + D LSN+  +  S+ +
Sbjct: 135 IMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPSTGGSLSV 191

>sp|O43633|CHM2A_HUMAN Charged multivesicular body protein 2a (Chromatin modifying protein
           2a) (CHMP2a) (Vacuolar protein sorting 2-1) (Vps2-1)
           (hVps2-1) (Putative breast adenocarcinoma marker BC-2)
          Length = 222

 Score =  228 bits (582), Expect = 1e-59
 Identities = 112/177 (63%), Positives = 143/177 (80%)
 Frame = +2

Query: 2   MKENQRALNKTIRELEREKSRLENEEKKVINDIKKMAKQGQMDAVKIMAKDLVRTRNYVK 181
           +++NQRALN+ +REL+RE+ +LE +EKK+I DIKKMAKQGQMDAV+IMAKDLVRTR YV+
Sbjct: 15  LRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVR 74

Query: 182 KFILMKANIQAVSLKIQTLRSTNAMAQAMKGVTRTMQRMNKSMNLPQLQKIMMEFERESN 361
           KF+LM+ANIQAVSLKIQTL+S N+MAQAMKGVT+ M  MN+ + LPQ+QKIMMEFER++ 
Sbjct: 75  KFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAE 134

Query: 362 IMEMKEEMMTDTIDDALXXXXXXXXXXKLVQQVLDELGIEIADTLSNIDPSKDSIGI 532
           IM+MKEEMM D IDDA+           +V QVLDELG+ + D LSN+  +  S+ +
Sbjct: 135 IMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPSTGGSLSV 191

>sp|Q5ZHN1|CHM2A_CHICK Charged multivesicular body protein 2a (Chromatin modifying protein
           2a) (CHMP2a)
          Length = 220

 Score =  218 bits (556), Expect = 1e-56
 Identities = 108/175 (61%), Positives = 138/175 (78%)
 Frame = +2

Query: 2   MKENQRALNKTIRELEREKSRLENEEKKVINDIKKMAKQGQMDAVKIMAKDLVRTRNYVK 181
           +++NQRAL + +REL+RE+ +LE +EKK+I DIKKMAKQGQMDAVKIMAKDLVRTR YVK
Sbjct: 15  LRQNQRALTRAMRELDRERQKLEAQEKKIIIDIKKMAKQGQMDAVKIMAKDLVRTRRYVK 74

Query: 182 KFILMKANIQAVSLKIQTLRSTNAMAQAMKGVTRTMQRMNKSMNLPQLQKIMMEFERESN 361
           KFI M+AN+QAVSLKIQTL+S N+MA AMKGVT+ M  MN+ + LPQ+QKIMMEFE+++ 
Sbjct: 75  KFITMRANVQAVSLKIQTLKSNNSMALAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQAG 134

Query: 362 IMEMKEEMMTDTIDDALXXXXXXXXXXKLVQQVLDELGIEIADTLSNIDPSKDSI 526
           IM+MKEE+M D IDDA+           +V QVLDELG+ + D L+ + P   S+
Sbjct: 135 IMDMKEELMNDAIDDAMGDEDDEEESDAVVSQVLDELGLNLTDELATLPPPGGSL 189

>sp|O14177|YDS1_SCHPO Hypothetical protein C4F8.01 in chromosome I
          Length = 210

 Score =  141 bits (356), Expect = 2e-33
 Identities = 69/165 (41%), Positives = 113/165 (68%)
 Frame = +2

Query: 2   MKENQRALNKTIRELEREKSRLENEEKKVINDIKKMAKQGQMDAVKIMAKDLVRTRNYVK 181
           ++ +QR+L +  REL+RE+++L+  E+ +I +IK  AK G   A +I A+DL+R RN  K
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKGSAKAGNTGAARIQARDLMRLRNSRK 77

Query: 182 KFILMKANIQAVSLKIQTLRSTNAMAQAMKGVTRTMQRMNKSMNLPQLQKIMMEFERESN 361
           K +  K  +QA+SL++QT+R++  M Q+M+G TR +  MNKSMN+P + +I  +FERE+ 
Sbjct: 78  KMMNAKTQLQAISLRLQTMRTSEQMMQSMRGATRLLTGMNKSMNIPAMARITQQFERENE 137

Query: 362 IMEMKEEMMTDTIDDALXXXXXXXXXXKLVQQVLDELGIEIADTL 496
           IME ++EM+ + +DDAL          +LV +VLDE+G++++  L
Sbjct: 138 IMEQRQEMIDENMDDAL-EEDDEEEADELVNKVLDEIGVDLSQGL 181

>sp|Q6NXD2|CHM2B_BRARE Charged multivesicular body protein 2b (Chromatin modifying protein
           2b) (CHMP2b)
          Length = 214

 Score =  115 bits (287), Expect = 2e-25
 Identities = 59/167 (35%), Positives = 100/167 (59%)
 Frame = +2

Query: 2   MKENQRALNKTIRELEREKSRLENEEKKVINDIKKMAKQGQMDAVKIMAKDLVRTRNYVK 181
           +KE  + L  T R++ R+++ LE +EK++  +IKKMAK G  DA K++AK LV+ R    
Sbjct: 14  IKEQNKELRGTQRQIARDRTALEKQEKQLEMEIKKMAKTGNRDACKVLAKQLVQVRKQKT 73

Query: 182 KFILMKANIQAVSLKIQTLRSTNAMAQAMKGVTRTMQRMNKSMNLPQLQKIMMEFERESN 361
           +   + + + ++S + + + S   MA AM   T+TMQ +NK M+  +  + +  F++E+ 
Sbjct: 74  RTYAVSSKVTSMSTQTKLMNSQMKMAGAMATTTKTMQAVNKKMDPKKTMQTLQNFQKETA 133

Query: 362 IMEMKEEMMTDTIDDALXXXXXXXXXXKLVQQVLDELGIEIADTLSN 502
            M+M EEMM DT+D+             +V QVLDE+GIEI+  +++
Sbjct: 134 KMDMTEEMMNDTLDEIFEDSGDEEESQDIVNQVLDEIGIEISGKMAH 180

>sp|Q5F3A2|CHM2B_CHICK Charged multivesicular body protein 2b (Chromatin modifying protein
           2b) (CHMP2b)
          Length = 214

 Score =  112 bits (279), Expect = 1e-24
 Identities = 59/166 (35%), Positives = 97/166 (58%)
 Frame = +2

Query: 2   MKENQRALNKTIRELEREKSRLENEEKKVINDIKKMAKQGQMDAVKIMAKDLVRTRNYVK 181
           +KE  R L  T R + R+++ LE +E+++  +IKKMAK G  +A K++AK LV+ R    
Sbjct: 14  IKEQNRELRGTQRTITRDRAALEKQERQLELEIKKMAKTGNKEACKVLAKQLVQLRKQKN 73

Query: 182 KFILMKANIQAVSLKIQTLRSTNAMAQAMKGVTRTMQRMNKSMNLPQLQKIMMEFERESN 361
           +   + + + ++S + + + S   MA AM    +TMQ +NK M+  +  + M  F++E+ 
Sbjct: 74  RTYAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENM 133

Query: 362 IMEMKEEMMTDTIDDALXXXXXXXXXXKLVQQVLDELGIEIADTLS 499
            MEM EEM+ DT+DD             +V QVLDE+GIEI+  ++
Sbjct: 134 KMEMTEEMINDTLDDIFDASDEEEESQDIVNQVLDEIGIEISGKMA 179

>sp|Q9UQN3|CHM2B_HUMAN Charged multivesicular body protein 2b (Chromatin modifying protein
           2b) (CHMP2b) (CHMP2.5) (Vacuolar protein sorting 2-2)
           (Vps2-2) (hVps2-2)
 sp|Q5RAV2|CHM2B_PONPY Charged multivesicular body protein 2b (Chromatin modifying protein
           2b) (CHMP2b)
          Length = 213

 Score =  111 bits (278), Expect = 2e-24
 Identities = 61/175 (34%), Positives = 99/175 (56%)
 Frame = +2

Query: 2   MKENQRALNKTIRELEREKSRLENEEKKVINDIKKMAKQGQMDAVKIMAKDLVRTRNYVK 181
           +KE  R L  T R + R+++ LE +EK++  +IKKMAK G  +A K++AK LV  R    
Sbjct: 14  IKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKT 73

Query: 182 KFILMKANIQAVSLKIQTLRSTNAMAQAMKGVTRTMQRMNKSMNLPQLQKIMMEFERESN 361
           +   + + + ++S + + + S   MA AM    +TMQ +NK M+  +  + M  F++E+ 
Sbjct: 74  RTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENM 133

Query: 362 IMEMKEEMMTDTIDDALXXXXXXXXXXKLVQQVLDELGIEIADTLSNIDPSKDSI 526
            MEM EEM+ DT+DD             +V QVLDE+GIEI+  ++    +  S+
Sbjct: 134 KMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSL 188

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,022,475
Number of Sequences: 369166
Number of extensions: 1214449
Number of successful extensions: 4220
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4193
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6921714800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00503

  1. Dr_sW_013_E17
  2. Dr_sW_018_J01
  3. Dr_sW_026_H20
  4. Dr_sW_025_M13