Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_J01
(673 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7ZW25|CHM2A_BRARE Charged multivesicular body protein 2... 189 4e-48
sp|Q6IP52|CHM2A_XENLA Charged multivesicular body protein 2... 188 1e-47
sp|Q6DFS6|CHM2A_XENTR Charged multivesicular body protein 2... 188 1e-47
sp|Q9DB34|CHM2A_MOUSE Charged multivesicular body protein 2... 186 5e-47
sp|O43633|CHM2A_HUMAN Charged multivesicular body protein 2... 186 5e-47
sp|Q5ZHN1|CHM2A_CHICK Charged multivesicular body protein 2... 179 4e-45
sp|O14177|YDS1_SCHPO Hypothetical protein C4F8.01 in chromo... 114 3e-25
sp|Q6NXD2|CHM2B_BRARE Charged multivesicular body protein 2... 93 5e-19
sp|Q7SYR0|CH2B1_XENLA Charged multivesicular body protein 2... 92 9e-19
sp|Q5F3A2|CHM2B_CHICK Charged multivesicular body protein 2... 92 2e-18
>sp|Q7ZW25|CHM2A_BRARE Charged multivesicular body protein 2a (Chromatin modifying protein
2a) (CHMP2a)
Length = 220
Score = 189 bits (481), Expect = 4e-48
Identities = 96/144 (66%), Positives = 115/144 (79%)
Frame = +1
Query: 19 KKMAKQGQMDAVKIMAKDLVRTRNYVKKFILMKANIQAVSLKIQTLRSTNAMAQAMKGVT 198
KKMAKQGQMDAVKIMAKDLVRTR YVKKFI+M+ANIQAVSLKIQTL+S N+MAQAMKGVT
Sbjct: 48 KKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVT 107
Query: 199 RTMQRMNKSMNLPQLQKIMMEFERESNIMEMKEEMMTDTIDDALXXXXXXXXXXKLVQQV 378
+ M MN+ + LPQ+QKIMMEFER+S IM+MKEEMM D IDDA+ +V QV
Sbjct: 108 KAMATMNRQLKLPQIQKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQV 167
Query: 379 LDELGIEIADTLSNIDPSKDSIGI 450
LDELG+ ++D LSN+ + S+ +
Sbjct: 168 LDELGLTLSDELSNLPATGGSLSV 191
>sp|Q6IP52|CHM2A_XENLA Charged multivesicular body protein 2a (Chromatin modifying protein
2a) (CHMP2a)
Length = 220
Score = 188 bits (477), Expect = 1e-47
Identities = 95/144 (65%), Positives = 114/144 (79%)
Frame = +1
Query: 19 KKMAKQGQMDAVKIMAKDLVRTRNYVKKFILMKANIQAVSLKIQTLRSTNAMAQAMKGVT 198
KKMAKQGQMDAVKIMAKDLVRTR YVKKFI+M+ANIQAVSLKIQTL+S N+MAQAMKGVT
Sbjct: 48 KKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVT 107
Query: 199 RTMQRMNKSMNLPQLQKIMMEFERESNIMEMKEEMMTDTIDDALXXXXXXXXXXKLVQQV 378
+ M MN+ + LPQ+QKIMMEFE++S IM+MKEEMM D IDDA+ +V QV
Sbjct: 108 KAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQV 167
Query: 379 LDELGIEIADTLSNIDPSKDSIGI 450
LDELG+ + D LSN+ + S+ +
Sbjct: 168 LDELGLTLTDELSNLPSTGGSLSV 191
>sp|Q6DFS6|CHM2A_XENTR Charged multivesicular body protein 2a (Chromatin modifying protein
2a) (CHMP2a)
Length = 220
Score = 188 bits (477), Expect = 1e-47
Identities = 95/144 (65%), Positives = 114/144 (79%)
Frame = +1
Query: 19 KKMAKQGQMDAVKIMAKDLVRTRNYVKKFILMKANIQAVSLKIQTLRSTNAMAQAMKGVT 198
KKMAKQGQMDAVKIMAKDLVRTR YVKKFI+M+ANIQAVSLKIQTL+S N+MAQAMKGVT
Sbjct: 48 KKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVT 107
Query: 199 RTMQRMNKSMNLPQLQKIMMEFERESNIMEMKEEMMTDTIDDALXXXXXXXXXXKLVQQV 378
+ M MN+ + LPQ+QKIMMEFE++S IM+MKEEMM D IDDA+ +V QV
Sbjct: 108 KAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQV 167
Query: 379 LDELGIEIADTLSNIDPSKDSIGI 450
LDELG+ + D LSN+ + S+ +
Sbjct: 168 LDELGLTLTDELSNLPSTGGSLSV 191
>sp|Q9DB34|CHM2A_MOUSE Charged multivesicular body protein 2a (Chromatin modifying protein
2a) (CHMP2a) (Vacuolar protein sorting 2) (mVps2)
Length = 222
Score = 186 bits (472), Expect = 5e-47
Identities = 93/144 (64%), Positives = 114/144 (79%)
Frame = +1
Query: 19 KKMAKQGQMDAVKIMAKDLVRTRNYVKKFILMKANIQAVSLKIQTLRSTNAMAQAMKGVT 198
KKMAKQGQMDAV+IMAKDLVRTR YV+KF+LM+ANIQAVSLKIQTL+S N+MAQAMKGVT
Sbjct: 48 KKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVT 107
Query: 199 RTMQRMNKSMNLPQLQKIMMEFERESNIMEMKEEMMTDTIDDALXXXXXXXXXXKLVQQV 378
+ M MN+ + LPQ+QKIMMEFER++ IM+MKEEMM D IDDA+ +V QV
Sbjct: 108 KAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQV 167
Query: 379 LDELGIEIADTLSNIDPSKDSIGI 450
LDELG+ + D LSN+ + S+ +
Sbjct: 168 LDELGLSLTDELSNLPSTGGSLSV 191
>sp|O43633|CHM2A_HUMAN Charged multivesicular body protein 2a (Chromatin modifying protein
2a) (CHMP2a) (Vacuolar protein sorting 2-1) (Vps2-1)
(hVps2-1) (Putative breast adenocarcinoma marker BC-2)
Length = 222
Score = 186 bits (472), Expect = 5e-47
Identities = 93/144 (64%), Positives = 114/144 (79%)
Frame = +1
Query: 19 KKMAKQGQMDAVKIMAKDLVRTRNYVKKFILMKANIQAVSLKIQTLRSTNAMAQAMKGVT 198
KKMAKQGQMDAV+IMAKDLVRTR YV+KF+LM+ANIQAVSLKIQTL+S N+MAQAMKGVT
Sbjct: 48 KKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVT 107
Query: 199 RTMQRMNKSMNLPQLQKIMMEFERESNIMEMKEEMMTDTIDDALXXXXXXXXXXKLVQQV 378
+ M MN+ + LPQ+QKIMMEFER++ IM+MKEEMM D IDDA+ +V QV
Sbjct: 108 KAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQV 167
Query: 379 LDELGIEIADTLSNIDPSKDSIGI 450
LDELG+ + D LSN+ + S+ +
Sbjct: 168 LDELGLSLTDELSNLPSTGGSLSV 191
>sp|Q5ZHN1|CHM2A_CHICK Charged multivesicular body protein 2a (Chromatin modifying protein
2a) (CHMP2a)
Length = 220
Score = 179 bits (455), Expect = 4e-45
Identities = 90/142 (63%), Positives = 110/142 (77%)
Frame = +1
Query: 19 KKMAKQGQMDAVKIMAKDLVRTRNYVKKFILMKANIQAVSLKIQTLRSTNAMAQAMKGVT 198
KKMAKQGQMDAVKIMAKDLVRTR YVKKFI M+AN+QAVSLKIQTL+S N+MA AMKGVT
Sbjct: 48 KKMAKQGQMDAVKIMAKDLVRTRRYVKKFITMRANVQAVSLKIQTLKSNNSMALAMKGVT 107
Query: 199 RTMQRMNKSMNLPQLQKIMMEFERESNIMEMKEEMMTDTIDDALXXXXXXXXXXKLVQQV 378
+ M MN+ + LPQ+QKIMMEFE+++ IM+MKEE+M D IDDA+ +V QV
Sbjct: 108 KAMATMNRQLKLPQIQKIMMEFEKQAGIMDMKEELMNDAIDDAMGDEDDEEESDAVVSQV 167
Query: 379 LDELGIEIADTLSNIDPSKDSI 444
LDELG+ + D L+ + P S+
Sbjct: 168 LDELGLNLTDELATLPPPGGSL 189
>sp|O14177|YDS1_SCHPO Hypothetical protein C4F8.01 in chromosome I
Length = 210
Score = 114 bits (284), Expect = 3e-25
Identities = 57/132 (43%), Positives = 88/132 (66%)
Frame = +1
Query: 19 KKMAKQGQMDAVKIMAKDLVRTRNYVKKFILMKANIQAVSLKIQTLRSTNAMAQAMKGVT 198
K AK G A +I A+DL+R RN KK + K +QA+SL++QT+R++ M Q+M+G T
Sbjct: 51 KGSAKAGNTGAARIQARDLMRLRNSRKKMMNAKTQLQAISLRLQTMRTSEQMMQSMRGAT 110
Query: 199 RTMQRMNKSMNLPQLQKIMMEFERESNIMEMKEEMMTDTIDDALXXXXXXXXXXKLVQQV 378
R + MNKSMN+P + +I +FERE+ IME ++EM+ + +DDAL +LV +V
Sbjct: 111 RLLTGMNKSMNIPAMARITQQFERENEIMEQRQEMIDENMDDAL-EEDDEEEADELVNKV 169
Query: 379 LDELGIEIADTL 414
LDE+G++++ L
Sbjct: 170 LDEIGVDLSQGL 181
>sp|Q6NXD2|CHM2B_BRARE Charged multivesicular body protein 2b (Chromatin modifying protein
2b) (CHMP2b)
Length = 214
Score = 93.2 bits (230), Expect = 5e-19
Identities = 48/134 (35%), Positives = 78/134 (58%)
Frame = +1
Query: 19 KKMAKQGQMDAVKIMAKDLVRTRNYVKKFILMKANIQAVSLKIQTLRSTNAMAQAMKGVT 198
KKMAK G DA K++AK LV+ R + + + + ++S + + + S MA AM T
Sbjct: 47 KKMAKTGNRDACKVLAKQLVQVRKQKTRTYAVSSKVTSMSTQTKLMNSQMKMAGAMATTT 106
Query: 199 RTMQRMNKSMNLPQLQKIMMEFERESNIMEMKEEMMTDTIDDALXXXXXXXXXXKLVQQV 378
+TMQ +NK M+ + + + F++E+ M+M EEMM DT+D+ +V QV
Sbjct: 107 KTMQAVNKKMDPKKTMQTLQNFQKETAKMDMTEEMMNDTLDEIFEDSGDEEESQDIVNQV 166
Query: 379 LDELGIEIADTLSN 420
LDE+GIEI+ +++
Sbjct: 167 LDEIGIEISGKMAH 180
>sp|Q7SYR0|CH2B1_XENLA Charged multivesicular body protein 2b-1 (Chromatin modifying
protein 2b-1) (CHMP2b-1)
Length = 214
Score = 92.4 bits (228), Expect = 9e-19
Identities = 49/133 (36%), Positives = 76/133 (57%)
Frame = +1
Query: 19 KKMAKQGQMDAVKIMAKDLVRTRNYVKKFILMKANIQAVSLKIQTLRSTNAMAQAMKGVT 198
KKMAK G DA K++AK LV+ R + + + + ++S + + + S MA AM
Sbjct: 47 KKMAKAGNKDACKVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTA 106
Query: 199 RTMQRMNKSMNLPQLQKIMMEFERESNIMEMKEEMMTDTIDDALXXXXXXXXXXKLVQQV 378
+TMQ +NK M+ + + M F++E+ MEM EEM+ DT+DD +V QV
Sbjct: 107 KTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASEDEEESQDIVNQV 166
Query: 379 LDELGIEIADTLS 417
LDE+GIEI+ ++
Sbjct: 167 LDEIGIEISGKMA 179
>sp|Q5F3A2|CHM2B_CHICK Charged multivesicular body protein 2b (Chromatin modifying protein
2b) (CHMP2b)
Length = 214
Score = 91.7 bits (226), Expect = 2e-18
Identities = 48/133 (36%), Positives = 76/133 (57%)
Frame = +1
Query: 19 KKMAKQGQMDAVKIMAKDLVRTRNYVKKFILMKANIQAVSLKIQTLRSTNAMAQAMKGVT 198
KKMAK G +A K++AK LV+ R + + + + ++S + + + S MA AM
Sbjct: 47 KKMAKTGNKEACKVLAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAMSTTA 106
Query: 199 RTMQRMNKSMNLPQLQKIMMEFERESNIMEMKEEMMTDTIDDALXXXXXXXXXXKLVQQV 378
+TMQ +NK M+ + + M F++E+ MEM EEM+ DT+DD +V QV
Sbjct: 107 KTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDEEEESQDIVNQV 166
Query: 379 LDELGIEIADTLS 417
LDE+GIEI+ ++
Sbjct: 167 LDEIGIEISGKMA 179
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,456,155
Number of Sequences: 369166
Number of extensions: 1179556
Number of successful extensions: 3083
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3071
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5636246860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)