Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_H20
(352 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O49741|GATA2_ARATH GATA transcription factor 2 (AtGATA-2) 33 0.26
sp|Q9DB34|CHM2A_MOUSE Charged multivesicular body protein 2... 32 0.59
sp|O43633|CHM2A_HUMAN Charged multivesicular body protein 2... 32 0.59
sp|Q7ZW25|CHM2A_BRARE Charged multivesicular body protein 2... 32 0.59
sp|Q6IP52|CHM2A_XENLA Charged multivesicular body protein 2... 31 0.77
sp|Q6DFS6|CHM2A_XENTR Charged multivesicular body protein 2... 31 0.77
sp|Q5ZHN1|CHM2A_CHICK Charged multivesicular body protein 2... 29 2.9
sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related... 28 8.5
>sp|O49741|GATA2_ARATH GATA transcription factor 2 (AtGATA-2)
Length = 264
Score = 32.7 bits (73), Expect = 0.26
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +2
Query: 125 VYEIKIQQLVIKQPQQMDCHHHH 193
V E++ Q+ V++QPQQ+ HHHH
Sbjct: 239 VMELRRQKEVMRQPQQVQLHHHH 261
>sp|Q9DB34|CHM2A_MOUSE Charged multivesicular body protein 2a (Chromatin modifying protein
2a) (CHMP2a) (Vacuolar protein sorting 2) (mVps2)
Length = 222
Score = 31.6 bits (70), Expect = 0.59
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 1 DALXXXXXXXXXXKLVQQVLDELGIEIADTLSNIDPSKDSIGI 129
DA+ +V QVLDELG+ + D LSN+ + S+ +
Sbjct: 149 DAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPSTGGSLSV 191
>sp|O43633|CHM2A_HUMAN Charged multivesicular body protein 2a (Chromatin modifying protein
2a) (CHMP2a) (Vacuolar protein sorting 2-1) (Vps2-1)
(hVps2-1) (Putative breast adenocarcinoma marker BC-2)
Length = 222
Score = 31.6 bits (70), Expect = 0.59
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 1 DALXXXXXXXXXXKLVQQVLDELGIEIADTLSNIDPSKDSIGI 129
DA+ +V QVLDELG+ + D LSN+ + S+ +
Sbjct: 149 DAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPSTGGSLSV 191
>sp|Q7ZW25|CHM2A_BRARE Charged multivesicular body protein 2a (Chromatin modifying protein
2a) (CHMP2a)
Length = 220
Score = 31.6 bits (70), Expect = 0.59
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 1 DALXXXXXXXXXXKLVQQVLDELGIEIADTLSNIDPSKDSIGI 129
DA+ +V QVLDELG+ ++D LSN+ + S+ +
Sbjct: 149 DAMGDEDDEEESDAVVSQVLDELGLTLSDELSNLPATGGSLSV 191
>sp|Q6IP52|CHM2A_XENLA Charged multivesicular body protein 2a (Chromatin modifying protein
2a) (CHMP2a)
Length = 220
Score = 31.2 bits (69), Expect = 0.77
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 1 DALXXXXXXXXXXKLVQQVLDELGIEIADTLSNIDPSKDSIGI 129
DA+ +V QVLDELG+ + D LSN+ + S+ +
Sbjct: 149 DAMGDEDDEEESDAVVSQVLDELGLTLTDELSNLPSTGGSLSV 191
>sp|Q6DFS6|CHM2A_XENTR Charged multivesicular body protein 2a (Chromatin modifying protein
2a) (CHMP2a)
Length = 220
Score = 31.2 bits (69), Expect = 0.77
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 1 DALXXXXXXXXXXKLVQQVLDELGIEIADTLSNIDPSKDSIGI 129
DA+ +V QVLDELG+ + D LSN+ + S+ +
Sbjct: 149 DAMGDEDDEEESDAVVSQVLDELGLTLTDELSNLPSTGGSLSV 191
>sp|Q5ZHN1|CHM2A_CHICK Charged multivesicular body protein 2a (Chromatin modifying protein
2a) (CHMP2a)
Length = 220
Score = 29.3 bits (64), Expect = 2.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 1 DALXXXXXXXXXXKLVQQVLDELGIEIADTLSNIDPSKDSI 123
DA+ +V QVLDELG+ + D L+ + P S+
Sbjct: 149 DAMGDEDDEEESDAVVSQVLDELGLNLTDELATLPPPGGSL 189
>sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related protein 2 precursor
(Megalin) (Glycoprotein 330) (gp330)
Length = 4660
Score = 27.7 bits (60), Expect = 8.5
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -2
Query: 135 ISYTDGI-FRWINIRKCVSDFNSQLIKHL 52
I TDGI F WIN R SDF++Q I +
Sbjct: 2466 IGVTDGIAFDWINRRIYYSDFSNQTINSM 2494
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,541,340
Number of Sequences: 369166
Number of extensions: 487677
Number of successful extensions: 1315
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 68,354,980
effective HSP length: 84
effective length of database: 52,837,240
effective search space used: 1690791680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)