Planarian EST Database

DrC_00456

Cluster detail
GO Category :
Consensus Sequence :
>DrC_00456 GCTAACTATAATACTATGGCAGATATACAAACATCGCCAACTGAAAGATCCGTTCATGCC ACTGAAAAGAAAATTTTAGCATATGATTATTTAGCAACAAAAATCAACGGTAAAGTGAAA TGGTTCAATGTTAAAAGTGGTTATGGATTCATCAACAGAAATGATAATCAGGAAGACATT TTTGTTCATCAAACTGCCATTTTAAAAAATAATCCTCGAAAATGGCAAAGATCCGTTGGA GATGGAGAAGAAGTTGAATTTGACGTTGTAGAAGGAGAAAAGGGGTTAGAAGCCGCAAAT GTAACTGGTCCAGATGGAATTCCTGTACAAGGAAGTAAATATGCTGCTGATAAAAGGCAT TATCGTTCAAGATCTTTTGGTCGTGCTGTGGGTAGAGGATTTGGAGGTCGAGTTAGATCT CTTAGAAATGGGCCTAGAGGAAGATCATTATCAAGAGAAATGGATTCAACTAATGAGGAC GCAGGACCAGAAGGAGATGCTGTATTTGGTACAGAGAGAAGACGAACTTTACCTAGTCGT AGAAGATCATATTATCCTCGACCTATGCCTCCACCTCCTCAAGGAGGTTATTATATGAAT CGAAGACCCCTACCTTCTAGAGATGATTATCGCGAACCTGATGAATATGAAAATCGTACT ATGATTATGGGTTATCGTGGCGGTGGAGTTCCAAGAAGACGATTTATTGGTGGATTTGGT AGAGGTGGTCATGCTAATGGAGGCTCAGGCGCAAACACTTATATTAGAGGTTATTCTCCA GGCCCTCCCAATGCTCGTAGATATATGGATAGTAGACCCGGTCCAGTTATGAATAATTTT TCTGATTCAGGACCAATAATTTCAAGAGGAACAAGTAGATATAGACGAGGCAGAGGAGGA CGTCCAATTATGTACCACAAACTTAATAGTGGAGTAAATAGTAGATCAACCAGAGGCCGA CAATTTGGAGGTGGTGAACGCAGAAATTGGCGAGATTATAATTCTTATAATAATAGAAAC AATGAAGACAATCAACAATGAGACAGTATCGGATGAAAAGAGAGCATCAGGTCGAGCCCC AAGTTTGGATGCCGAAAGCAACCAGAGTGATGACGATGCTATCCAGAAGACGTCTGAGTT AAATTTAGAAGAAATAAGAGCGTCTTAAATTTTTTTAATGAAAATGGATATACTATTGTT ATTTTTGTGTTATCTCATTTATATCCTAGCTATGTTAGTTAAATGTTTCAAATCTTCTGT TATACTAACCAGATACTAAGGTGATATCTAATTTATAAACCACTCTTAGAAGCCTTTGTT CTGGAAACTCATTTATTCATTTCGATTGAAATTTTATAATTCAAAATTAAATCGAATAAC AATTTGCATTTAATTTCCTGCAGGACAGGATATTTATTTTGCGTTGGTTACAGAACAAAA GCATCGTAGACTCGTGACAATGAACAGCGCTTATTGCAATGTGATCGTTAAAATTTGTTT TGTGAGCTGAGACTATACTGAAAGTTGTGACAACAGTTGTTAATTTGTTATGAAAGATAT CGATGGCGAGAAATGTCATCAATATAATTTT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00456
         (1591 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P21573|YBOX1_XENLA  Nuclease sensitive element binding pr...   122   2e-27
sp|Q9JKB3|DBPA_MOUSE  DNA-binding protein A (Cold shock doma...   122   3e-27
sp|P16989|DBPA_HUMAN  DNA-binding protein A (Cold shock doma...   122   3e-27
sp|Q62764|DBPA_RAT  DNA-binding protein A (Cold shock domain...   122   3e-27
sp|P62960|YBOX1_MOUSE  Nuclease sensitive element binding pr...   121   5e-27
sp|P67809|YBOX1_HUMAN  Nuclease sensitive element binding pr...   121   5e-27
sp|Q06066|YBOX1_CHICK  Nuclease sensitive element binding pr...   121   5e-27
sp|P41824|YBOXH_APLCA  Y-box factor homolog (APY1)                117   1e-25
sp|Q00436|YB3_XENLA  B box binding protein (YB3 protein)          116   2e-25
sp|P21574|YBX2A_XENLA  Y-box binding protein 2-A (Cytoplasmi...   110   9e-24

>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor)
          Length = 303

 Score =  122 bits (307), Expect = 2e-27
 Identities = 57/91 (62%), Positives = 67/91 (73%)
 Frame = +1

Query: 91  LATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXX 270
           +ATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RS            
Sbjct: 33  IATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 92

Query: 271 XXXXXLEAANVTGPDGIPVQGSKYAADKRHY 363
                 EAANVTGP+G+PVQGSKYAAD+ HY
Sbjct: 93  EGEKGAEAANVTGPEGVPVQGSKYAADRNHY 123

>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock domain protein A) (Y-box protein
           3)
 sp|Q5PQD5|DBPA_XENLA DNA-binding protein A (Cold shock domain protein A)
          Length = 361

 Score =  122 bits (306), Expect = 3e-27
 Identities = 60/100 (60%), Positives = 71/100 (71%)
 Frame = +1

Query: 64  EKKILAYDYLATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXX 243
           EKK+LA     TK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RS   
Sbjct: 75  EKKVLA-----TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGD 129

Query: 244 XXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHY 363
                          EAANVTGPDG+PV+GS+YAAD+R Y
Sbjct: 130 GETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRY 169

>sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock domain protein A) (Single-strand
           DNA binding protein NF-GMB)
          Length = 372

 Score =  122 bits (306), Expect = 3e-27
 Identities = 60/100 (60%), Positives = 71/100 (71%)
 Frame = +1

Query: 64  EKKILAYDYLATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXX 243
           EKK+LA     TK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RS   
Sbjct: 83  EKKVLA-----TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGD 137

Query: 244 XXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHY 363
                          EAANVTGPDG+PV+GS+YAAD+R Y
Sbjct: 138 GETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRY 177

>sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain protein A) (Muscle Y-box
           protein YB2) (Y-box binding protein-A) (RYB-A)
          Length = 361

 Score =  122 bits (306), Expect = 3e-27
 Identities = 60/100 (60%), Positives = 71/100 (71%)
 Frame = +1

Query: 64  EKKILAYDYLATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXX 243
           EKK+LA     TK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RS   
Sbjct: 75  EKKVLA-----TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGD 129

Query: 244 XXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHY 363
                          EAANVTGPDG+PV+GS+YAAD+R Y
Sbjct: 130 GETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRY 169

>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
 sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
          Length = 322

 Score =  121 bits (304), Expect = 5e-27
 Identities = 57/91 (62%), Positives = 66/91 (72%)
 Frame = +1

Query: 91  LATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXX 270
           +ATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RS            
Sbjct: 53  IATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 112

Query: 271 XXXXXLEAANVTGPDGIPVQGSKYAADKRHY 363
                 EAANVTGP G+PVQGSKYAAD+ HY
Sbjct: 113 EGEKGAEAANVTGPGGVPVQGSKYAADRNHY 143

>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
 sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
          Length = 324

 Score =  121 bits (304), Expect = 5e-27
 Identities = 57/91 (62%), Positives = 66/91 (72%)
 Frame = +1

Query: 91  LATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXX 270
           +ATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RS            
Sbjct: 55  IATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 114

Query: 271 XXXXXLEAANVTGPDGIPVQGSKYAADKRHY 363
                 EAANVTGP G+PVQGSKYAAD+ HY
Sbjct: 115 EGEKGAEAANVTGPGGVPVQGSKYAADRNHY 145

>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor)
          Length = 321

 Score =  121 bits (304), Expect = 5e-27
 Identities = 57/91 (62%), Positives = 66/91 (72%)
 Frame = +1

Query: 91  LATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXX 270
           +ATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RS            
Sbjct: 52  IATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 111

Query: 271 XXXXXLEAANVTGPDGIPVQGSKYAADKRHY 363
                 EAANVTGP G+PVQGSKYAAD+ HY
Sbjct: 112 EGEKGAEAANVTGPGGVPVQGSKYAADRNHY 142

>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
          Length = 253

 Score =  117 bits (292), Expect = 1e-25
 Identities = 63/124 (50%), Positives = 79/124 (63%), Gaps = 8/124 (6%)
 Frame = +1

Query: 16  MADIQTSPT--------ERSVHATEKKILAYDYLATKINGKVKWFNVKSGYGFINRNDNQ 171
           MAD +  P         E++    EKKI+A     ++++G VKWFNVKSGYGFINR+D +
Sbjct: 1   MADTEKQPEVEENQPDQEQNEEQKEKKIIA-----SQVSGTVKWFNVKSGYGFINRDDTK 55

Query: 172 EDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 351
           ED+FVHQTAI+KNNPRK+ RS                  EAANVTGP+G  VQGSKYAAD
Sbjct: 56  EDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGNEAANVTGPEGSNVQGSKYAAD 115

Query: 352 KRHY 363
           +R +
Sbjct: 116 RRRF 119

>sp|Q00436|YB3_XENLA B box binding protein (YB3 protein)
          Length = 305

 Score =  116 bits (291), Expect = 2e-25
 Identities = 58/100 (58%), Positives = 69/100 (69%)
 Frame = +1

Query: 64  EKKILAYDYLATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXX 243
           EKK++A     TK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RS   
Sbjct: 29  EKKVIA-----TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGD 83

Query: 244 XXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHY 363
                          EAANVTGP  +PVQGSKYAAD+ +Y
Sbjct: 84  GETVEFDVVEGEKGAEAANVTGPGPVPVQGSKYAADRNNY 123

>sp|P21574|YBX2A_XENLA Y-box binding protein 2-A (Cytoplasmic RNA-binding protein p56)
           (mRNP4)
          Length = 336

 Score =  110 bits (276), Expect = 9e-24
 Identities = 51/91 (56%), Positives = 65/91 (71%)
 Frame = +1

Query: 91  LATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXX 270
           LAT++ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RS            
Sbjct: 38  LATQVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVV 97

Query: 271 XXXXXLEAANVTGPDGIPVQGSKYAADKRHY 363
                 EAANVTGP G+PV+GS++A ++R +
Sbjct: 98  EGEKGAEAANVTGPGGVPVKGSRFAPNRRRF 128

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,990,278
Number of Sequences: 369166
Number of extensions: 2565469
Number of successful extensions: 5778
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5755
length of database: 68,354,980
effective HSP length: 115
effective length of database: 47,110,455
effective search space used: 19503728370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00456

Planaria EST Database

DrC_00456

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail