Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_P19
(894 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P21573|YBOX1_XENLA Nuclease sensitive element binding pr... 122 1e-27
sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock doma... 122 1e-27
sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock doma... 122 1e-27
sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain... 122 1e-27
sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding pr... 121 2e-27
sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding pr... 121 2e-27
sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding pr... 121 2e-27
sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1) 117 6e-26
sp|Q00436|YB3_XENLA B box binding protein (YB3 protein) 116 7e-26
sp|P21574|YBX2A_XENLA Y-box binding protein 2-A (Cytoplasmi... 110 4e-24
>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 303
Score = 122 bits (307), Expect = 1e-27
Identities = 57/91 (62%), Positives = 67/91 (73%)
Frame = +1
Query: 91 LATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXX 270
+ATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RS
Sbjct: 33 IATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 92
Query: 271 XXXXXLEAANVTGPDGIPVQGSKYAADKRHY 363
EAANVTGP+G+PVQGSKYAAD+ HY
Sbjct: 93 EGEKGAEAANVTGPEGVPVQGSKYAADRNHY 123
>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock domain protein A) (Y-box protein
3)
sp|Q5PQD5|DBPA_XENLA DNA-binding protein A (Cold shock domain protein A)
Length = 361
Score = 122 bits (306), Expect = 1e-27
Identities = 60/100 (60%), Positives = 71/100 (71%)
Frame = +1
Query: 64 EKKILAYDYLATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXX 243
EKK+LA TK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RS
Sbjct: 75 EKKVLA-----TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGD 129
Query: 244 XXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHY 363
EAANVTGPDG+PV+GS+YAAD+R Y
Sbjct: 130 GETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRY 169
>sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock domain protein A) (Single-strand
DNA binding protein NF-GMB)
Length = 372
Score = 122 bits (306), Expect = 1e-27
Identities = 60/100 (60%), Positives = 71/100 (71%)
Frame = +1
Query: 64 EKKILAYDYLATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXX 243
EKK+LA TK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RS
Sbjct: 83 EKKVLA-----TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGD 137
Query: 244 XXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHY 363
EAANVTGPDG+PV+GS+YAAD+R Y
Sbjct: 138 GETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRY 177
>sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain protein A) (Muscle Y-box
protein YB2) (Y-box binding protein-A) (RYB-A)
Length = 361
Score = 122 bits (306), Expect = 1e-27
Identities = 60/100 (60%), Positives = 71/100 (71%)
Frame = +1
Query: 64 EKKILAYDYLATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXX 243
EKK+LA TK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RS
Sbjct: 75 EKKVLA-----TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGD 129
Query: 244 XXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHY 363
EAANVTGPDG+PV+GS+YAAD+R Y
Sbjct: 130 GETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRY 169
>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 322
Score = 121 bits (304), Expect = 2e-27
Identities = 57/91 (62%), Positives = 66/91 (72%)
Frame = +1
Query: 91 LATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXX 270
+ATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RS
Sbjct: 53 IATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 112
Query: 271 XXXXXLEAANVTGPDGIPVQGSKYAADKRHY 363
EAANVTGP G+PVQGSKYAAD+ HY
Sbjct: 113 EGEKGAEAANVTGPGGVPVQGSKYAADRNHY 143
>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 324
Score = 121 bits (304), Expect = 2e-27
Identities = 57/91 (62%), Positives = 66/91 (72%)
Frame = +1
Query: 91 LATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXX 270
+ATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RS
Sbjct: 55 IATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 114
Query: 271 XXXXXLEAANVTGPDGIPVQGSKYAADKRHY 363
EAANVTGP G+PVQGSKYAAD+ HY
Sbjct: 115 EGEKGAEAANVTGPGGVPVQGSKYAADRNHY 145
>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 321
Score = 121 bits (304), Expect = 2e-27
Identities = 57/91 (62%), Positives = 66/91 (72%)
Frame = +1
Query: 91 LATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXX 270
+ATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RS
Sbjct: 52 IATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 111
Query: 271 XXXXXLEAANVTGPDGIPVQGSKYAADKRHY 363
EAANVTGP G+PVQGSKYAAD+ HY
Sbjct: 112 EGEKGAEAANVTGPGGVPVQGSKYAADRNHY 142
>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
Length = 253
Score = 117 bits (292), Expect = 6e-26
Identities = 63/124 (50%), Positives = 79/124 (63%), Gaps = 8/124 (6%)
Frame = +1
Query: 16 MADIQTSPT--------ERSVHATEKKILAYDYLATKINGKVKWFNVKSGYGFINRNDNQ 171
MAD + P E++ EKKI+A ++++G VKWFNVKSGYGFINR+D +
Sbjct: 1 MADTEKQPEVEENQPDQEQNEEQKEKKIIA-----SQVSGTVKWFNVKSGYGFINRDDTK 55
Query: 172 EDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 351
ED+FVHQTAI+KNNPRK+ RS EAANVTGP+G VQGSKYAAD
Sbjct: 56 EDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGNEAANVTGPEGSNVQGSKYAAD 115
Query: 352 KRHY 363
+R +
Sbjct: 116 RRRF 119
>sp|Q00436|YB3_XENLA B box binding protein (YB3 protein)
Length = 305
Score = 116 bits (291), Expect = 7e-26
Identities = 58/100 (58%), Positives = 69/100 (69%)
Frame = +1
Query: 64 EKKILAYDYLATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXX 243
EKK++A TK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RS
Sbjct: 29 EKKVIA-----TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGD 83
Query: 244 XXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHY 363
EAANVTGP +PVQGSKYAAD+ +Y
Sbjct: 84 GETVEFDVVEGEKGAEAANVTGPGPVPVQGSKYAADRNNY 123
>sp|P21574|YBX2A_XENLA Y-box binding protein 2-A (Cytoplasmic RNA-binding protein p56)
(mRNP4)
Length = 336
Score = 110 bits (276), Expect = 4e-24
Identities = 51/91 (56%), Positives = 65/91 (71%)
Frame = +1
Query: 91 LATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXX 270
LAT++ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RS
Sbjct: 38 LATQVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVV 97
Query: 271 XXXXXLEAANVTGPDGIPVQGSKYAADKRHY 363
EAANVTGP G+PV+GS++A ++R +
Sbjct: 98 EGEKGAEAANVTGPGGVPVKGSRFAPNRRRF 128
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.314 0.133 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,361,578
Number of Sequences: 369166
Number of extensions: 1423367
Number of successful extensions: 2741
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2720
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8982382310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)