Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_P16
(564 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P10569|MYSC_ACACA Myosin IC heavy chain 30 3.2
sp|P34137|PTP1_DICDI Tyrosine-protein phosphatase 1 (Protei... 30 5.4
sp|Q00684|CDC14_YEAST Tyrosine-protein phosphatase CDC14 29 7.0
sp|P35826|SLAP_BACTI S-layer protein precursor (Surface lay... 29 9.2
>sp|P10569|MYSC_ACACA Myosin IC heavy chain
Length = 1168
Score = 30.4 bits (67), Expect = 3.2
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = -1
Query: 552 MTFLAIDIFHNKLTTVVTTFSIVSAHKTNFNDHIAISAVHCHESTMLLFCNQRKINILSC 373
M +AID +K+ V F V + +FN +I+ ++ ML+ N N+L C
Sbjct: 770 MFLVAIDPNKDKIEKKVKPFLYVLKRRIDFNKIGSITLSPLQDNFMLISVNGEHSNLLEC 829
Query: 372 RKLNAIV 352
R+ ++
Sbjct: 830 RRKTELI 836
>sp|P34137|PTP1_DICDI Tyrosine-protein phosphatase 1 (Protein-tyrosine-phosphate
phosphohydrolase 1)
Length = 521
Score = 29.6 bits (65), Expect = 5.4
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +2
Query: 5 NNNETVSDEKRASGRAPSLDAESNQSDDDAIQKT 106
NNN +++ S P + + + DDDA + T
Sbjct: 390 NNNNNINNNSNGSNNTPQTEPNNEEDDDDAAEST 423
>sp|Q00684|CDC14_YEAST Tyrosine-protein phosphatase CDC14
Length = 551
Score = 29.3 bits (64), Expect = 7.0
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 130 KSVLNFFNENGYTIVIFVLSHLY 198
KSVLNFF N +V+ + SHLY
Sbjct: 212 KSVLNFFANNNVQLVVRLNSHLY 234
>sp|P35826|SLAP_BACTI S-layer protein precursor (Surface layer protein)
Length = 393
Score = 28.9 bits (63), Expect = 9.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 308 YSFRLKFYNSKLNRITIAFNFLQDRIFIL 394
Y + L +++ N +TI FNF ++R FIL
Sbjct: 317 YCWNLFIFDNVFNDLTILFNFKRERFFIL 345
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,227,155
Number of Sequences: 369166
Number of extensions: 884480
Number of successful extensions: 1679
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1678
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4078830820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)