Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_J11
(724 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P22681|CBL_HUMAN CBL E3 ubiquitin protein ligase (Signal... 34 0.45
sp|P22682|CBL_MOUSE CBL E3 ubiquitin protein ligase (Signal... 31 2.9
sp|Q7SGZ5|PALF_NEUCR pH-response regulator protein palF/rim-8 30 8.5
>sp|P22681|CBL_HUMAN CBL E3 ubiquitin protein ligase (Signal transduction protein CBL)
(Proto-oncogene c-CBL) (Casitas B-lineage lymphoma
proto-oncogene) (RING finger protein 55)
Length = 906
Score = 33.9 bits (76), Expect = 0.45
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 118 VPNTASPSGPASSLVE-SISLDNDLPLGPFLRDLTRPPNP 2
VP++AS G AS S+ D LP+ P LRDL PP P
Sbjct: 509 VPSSASALGTASKAASGSLHKDKPLPVPPTLRDLPPPPPP 548
>sp|P22682|CBL_MOUSE CBL E3 ubiquitin protein ligase (Signal transduction protein CBL)
(Proto-oncogene c-CBL) (Casitas B-lineage lymphoma
proto-oncogene)
Length = 913
Score = 31.2 bits (69), Expect = 2.9
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 118 VPNTASPSGPASSLVE-SISLDNDLPLGPFLRDLTRPPNP 2
VP + S G AS S+ D LP+ P LRDL PP P
Sbjct: 507 VPASTSVLGTASKAASGSLHKDKPLPIPPTLRDLPPPPPP 546
>sp|Q7SGZ5|PALF_NEUCR pH-response regulator protein palF/rim-8
Length = 927
Score = 29.6 bits (65), Expect = 8.5
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -1
Query: 121 SVPNTASPSGPASSLVESISLDNDLPLGPFLRDLTRPP 8
+ P TASP A + V + + DLP P L +L RPP
Sbjct: 707 ATPATASPFDHALAPVYTPTPAEDLPSAPTLEELDRPP 744
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,390,502
Number of Sequences: 369166
Number of extensions: 972793
Number of successful extensions: 2304
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2304
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6462248555
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)