Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_O17
(167 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1) 77 2e-14
sp|Q00436|YB3_XENLA B box binding protein (YB3 protein) 75 5e-14
sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock doma... 75 5e-14
sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmi... 75 5e-14
sp|P21573|YBOX1_XENLA Nuclease sensitive element binding pr... 75 5e-14
sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding pr... 75 5e-14
sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding pr... 75 5e-14
sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding pr... 75 5e-14
sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock doma... 75 5e-14
sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain... 75 5e-14
>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
Length = 253
Score = 76.6 bits (187), Expect = 2e-14
Identities = 33/40 (82%), Positives = 38/40 (95%)
Frame = +1
Query: 4 VKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRS 123
VKWFNVKSGYGFINR+D +ED+FVHQTAI+KNNPRK+ RS
Sbjct: 37 VKWFNVKSGYGFINRDDTKEDVFVHQTAIVKNNPRKYLRS 76
>sp|Q00436|YB3_XENLA B box binding protein (YB3 protein)
Length = 305
Score = 75.1 bits (183), Expect = 5e-14
Identities = 32/40 (80%), Positives = 37/40 (92%)
Frame = +1
Query: 4 VKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRS 123
VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RS
Sbjct: 41 VKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRS 80
>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock domain protein A) (Y-box protein
3)
sp|Q5PQD5|DBPA_XENLA DNA-binding protein A (Cold shock domain protein A)
Length = 361
Score = 75.1 bits (183), Expect = 5e-14
Identities = 32/40 (80%), Positives = 37/40 (92%)
Frame = +1
Query: 4 VKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRS 123
VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RS
Sbjct: 87 VKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRS 126
>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
(mRNP3)
Length = 324
Score = 75.1 bits (183), Expect = 5e-14
Identities = 32/40 (80%), Positives = 38/40 (95%)
Frame = +1
Query: 4 VKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRS 123
VKWFNV++GYGFINRND++ED+FVHQTAI KNNPRK+ RS
Sbjct: 46 VKWFNVRNGYGFINRNDSKEDVFVHQTAIKKNNPRKFLRS 85
>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 303
Score = 75.1 bits (183), Expect = 5e-14
Identities = 32/40 (80%), Positives = 37/40 (92%)
Frame = +1
Query: 4 VKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRS 123
VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RS
Sbjct: 41 VKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRS 80
>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 322
Score = 75.1 bits (183), Expect = 5e-14
Identities = 32/40 (80%), Positives = 37/40 (92%)
Frame = +1
Query: 4 VKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRS 123
VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RS
Sbjct: 61 VKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRS 100
>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 324
Score = 75.1 bits (183), Expect = 5e-14
Identities = 32/40 (80%), Positives = 37/40 (92%)
Frame = +1
Query: 4 VKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRS 123
VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RS
Sbjct: 63 VKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRS 102
>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 321
Score = 75.1 bits (183), Expect = 5e-14
Identities = 32/40 (80%), Positives = 37/40 (92%)
Frame = +1
Query: 4 VKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRS 123
VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RS
Sbjct: 60 VKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRS 99
>sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock domain protein A) (Single-strand
DNA binding protein NF-GMB)
Length = 372
Score = 75.1 bits (183), Expect = 5e-14
Identities = 32/40 (80%), Positives = 37/40 (92%)
Frame = +1
Query: 4 VKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRS 123
VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RS
Sbjct: 95 VKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRS 134
>sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain protein A) (Muscle Y-box
protein YB2) (Y-box binding protein-A) (RYB-A)
Length = 361
Score = 75.1 bits (183), Expect = 5e-14
Identities = 32/40 (80%), Positives = 37/40 (92%)
Frame = +1
Query: 4 VKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRS 123
VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RS
Sbjct: 87 VKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRS 126
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,625,527
Number of Sequences: 369166
Number of extensions: 193153
Number of successful extensions: 590
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 68,354,980
effective HSP length: 28
effective length of database: 63,182,400
effective search space used: 1705924800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)