Planaria EST Database

DrC_00431

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00431
         (745 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P61619|S61A1_HUMAN  Protein transport protein Sec61 alpha...   340   2e-93
sp|Q9JLR1|S61A2_MOUSE  Protein transport protein Sec61 alpha...   339   4e-93
sp|Q90ZM2|S61A1_BRARE  Protein transport protein Sec61 alpha...   339   4e-93
sp|Q8AY32|SC61A_GADOC  Protein transport protein Sec61 alpha...   339   4e-93
sp|Q98SN8|S61A2_ONCMY  Protein transport protein Sec61 alpha...   339   4e-93
sp|P38377|S61A1_CANFA  Protein transport protein Sec61 alpha...   338   7e-93
sp|Q7T278|SC61A_HARAN  Protein transport protein Sec61 alpha...   338   7e-93
sp|Q8AY36|SC61A_PAGBO  Protein transport protein Sec61 alpha...   338   7e-93
sp|Q8AY33|SC61A_BORSA  Protein transport protein Sec61 alpha...   337   2e-92
sp|Q90YL4|S61A2_BRARE  Protein transport protein Sec61 alpha...   337   2e-92

>sp|P61619|S61A1_HUMAN Protein transport protein Sec61 alpha subunit isoform 1 (Sec61
           alpha-1)
 sp|P61621|S61A1_RAT Protein transport protein Sec61 alpha subunit isoform 1 (Sec61
           alpha-1)
 sp|P61620|S61A1_MOUSE Protein transport protein Sec61 alpha subunit isoform 1 (Sec61
           alpha-1)
          Length = 476

 Score =  340 bits (873), Expect = 2e-93
 Identities = 168/207 (81%), Positives = 189/207 (91%), Gaps = 2/207 (0%)
 Frame = +1

Query: 1   RYRGQHSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSNKFRGNLIINLLGTWSDGEAG 180
           RYRGQ+++YPIKLFYTSNIPIILQSALVSNLYVISQMLS +F GNL+++LLGTWSD  +G
Sbjct: 271 RYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSG 330

Query: 181 --SRSVPIGGICYYMSPPDSLTAMFHDPVHGFIYIAFMLGSCAFFSKTWIDVSGSSAKDV 354
             +R+ P+GG+CYY+SPP+S  ++  DPVH  +YI FMLGSCAFFSKTWI+VSGSSAKDV
Sbjct: 331 GPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDV 390

Query: 355 AKQLKEQQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLA 534
           AKQLKEQQMVMRGHRE SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLA
Sbjct: 391 AKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLA 450

Query: 535 VTIIYQYFEIFVKEQNEMGGSMSTLLF 615
           VTIIYQYFEIFVKEQ+E+ GSM  LLF
Sbjct: 451 VTIIYQYFEIFVKEQSEV-GSMGALLF 476

>sp|Q9JLR1|S61A2_MOUSE Protein transport protein Sec61 alpha subunit isoform 2 (Sec61
           alpha-2)
 sp|Q9H9S3|S61A2_HUMAN Protein transport protein Sec61 alpha subunit isoform 2 (Sec61
           alpha-2)
          Length = 476

 Score =  339 bits (870), Expect = 4e-93
 Identities = 169/207 (81%), Positives = 186/207 (89%), Gaps = 2/207 (0%)
 Frame = +1

Query: 1   RYRGQHSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSNKFRGNLIINLLGTWSDGEAG 180
           RYRGQ+SSYPIKLFYTSNIPIILQSALVSNLYVISQMLS +F GN ++NLLG W+D   G
Sbjct: 271 RYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGG 330

Query: 181 --SRSVPIGGICYYMSPPDSLTAMFHDPVHGFIYIAFMLGSCAFFSKTWIDVSGSSAKDV 354
             +RS P+GG+CYY+SPP+S+ A+F DPVH  +YI FMLGSCAFFSKTWI+VSGSSAKDV
Sbjct: 331 GPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDV 390

Query: 355 AKQLKEQQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLA 534
           AKQLKEQQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLA
Sbjct: 391 AKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLA 450

Query: 535 VTIIYQYFEIFVKEQNEMGGSMSTLLF 615
           VTIIYQYFEIFVKEQ E+GG M  L F
Sbjct: 451 VTIIYQYFEIFVKEQAEVGG-MGALFF 476

>sp|Q90ZM2|S61A1_BRARE Protein transport protein Sec61 alpha subunit isoform A
          Length = 476

 Score =  339 bits (870), Expect = 4e-93
 Identities = 167/207 (80%), Positives = 187/207 (90%), Gaps = 2/207 (0%)
 Frame = +1

Query: 1   RYRGQHSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSNKFRGNLIINLLGTWSDGEAG 180
           RYRGQ+++YPIKLFYTSNIPIILQSALVSNLYVISQMLS +F GN ++NLLGTWSD  +G
Sbjct: 271 RYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSSG 330

Query: 181 --SRSVPIGGICYYMSPPDSLTAMFHDPVHGFIYIAFMLGSCAFFSKTWIDVSGSSAKDV 354
             +R+ P+GG+CYY+SPP+S  ++  DPVH  IYI FMLGSCAFFSKTWI+VSGSSAKDV
Sbjct: 331 GPARAYPVGGLCYYLSPPESFGSVLDDPVHAVIYIVFMLGSCAFFSKTWIEVSGSSAKDV 390

Query: 355 AKQLKEQQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLA 534
           AKQLKEQQMVMRGHRE SM+HELNRYIPTAAAFGGLCIG LSV+ADFLGAIGSGTGILLA
Sbjct: 391 AKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLA 450

Query: 535 VTIIYQYFEIFVKEQNEMGGSMSTLLF 615
           VTIIYQYFEIFVKEQ+E+ GSM  LLF
Sbjct: 451 VTIIYQYFEIFVKEQSEV-GSMGALLF 476

>sp|Q8AY32|SC61A_GADOC Protein transport protein Sec61 alpha subunit
          Length = 476

 Score =  339 bits (870), Expect = 4e-93
 Identities = 168/207 (81%), Positives = 185/207 (89%), Gaps = 2/207 (0%)
 Frame = +1

Query: 1   RYRGQHSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSNKFRGNLIINLLGTWSDGEAG 180
           RYRGQ+++YPIKLFYTSNIPIILQSALVSNLYVISQMLS +F GN ++NLLGTWSD   G
Sbjct: 271 RYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSTG 330

Query: 181 --SRSVPIGGICYYMSPPDSLTAMFHDPVHGFIYIAFMLGSCAFFSKTWIDVSGSSAKDV 354
             +R+ P+GG+CYY SPP+S  ++  DPVH  IYI FMLGSCAFFSKTWI+VSGSSAKDV
Sbjct: 331 GPARAYPVGGLCYYFSPPESFGSVLDDPVHASIYIVFMLGSCAFFSKTWIEVSGSSAKDV 390

Query: 355 AKQLKEQQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLA 534
           AKQLKEQQMVMRGHRE SM+HELNRYIPTAAAFGGLCIG LSV+ADFLGAIGSGTGILLA
Sbjct: 391 AKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLA 450

Query: 535 VTIIYQYFEIFVKEQNEMGGSMSTLLF 615
           VTIIYQYFEIFVKEQ+EM GSM  LLF
Sbjct: 451 VTIIYQYFEIFVKEQSEM-GSMGALLF 476

>sp|Q98SN8|S61A2_ONCMY Protein transport protein Sec61 alpha subunit isoform B
          Length = 476

 Score =  339 bits (870), Expect = 4e-93
 Identities = 167/207 (80%), Positives = 186/207 (89%), Gaps = 2/207 (0%)
 Frame = +1

Query: 1   RYRGQHSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSNKFRGNLIINLLGTWSDGEAG 180
           RYRGQ+++YPIKLFYTSNIPIILQSALVSNLYVISQMLS +F GN ++NLLGTWSD  +G
Sbjct: 271 RYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSSG 330

Query: 181 --SRSVPIGGICYYMSPPDSLTAMFHDPVHGFIYIAFMLGSCAFFSKTWIDVSGSSAKDV 354
             +R+ P+GG+CYY SPP+S  ++  DP+H  IYI FMLGSCAFFSKTWI+VSGSSAKDV
Sbjct: 331 GPARAYPVGGLCYYFSPPESFGSVLDDPIHAAIYICFMLGSCAFFSKTWIEVSGSSAKDV 390

Query: 355 AKQLKEQQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLA 534
           AKQLKEQQMVMRGHRE SM+HELNRYIPTAAAFGGLCIG LSV+ADFLGAIGSGTGILLA
Sbjct: 391 AKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLA 450

Query: 535 VTIIYQYFEIFVKEQNEMGGSMSTLLF 615
           VTIIYQYFEIFVKEQ+EM GSM  LLF
Sbjct: 451 VTIIYQYFEIFVKEQSEM-GSMGALLF 476

>sp|P38377|S61A1_CANFA Protein transport protein Sec61 alpha subunit isoform 1 (Sec61
           alpha-1)
          Length = 476

 Score =  338 bits (868), Expect = 7e-93
 Identities = 167/207 (80%), Positives = 189/207 (91%), Gaps = 2/207 (0%)
 Frame = +1

Query: 1   RYRGQHSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSNKFRGNLIINLLGTWSDGEAG 180
           RYRGQ+++YPIKLFYTSNIPIILQSALVSNLYVISQMLS +F GNL+++LLGTWSD  +G
Sbjct: 271 RYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSG 330

Query: 181 --SRSVPIGGICYYMSPPDSLTAMFHDPVHGFIYIAFMLGSCAFFSKTWIDVSGSSAKDV 354
             +R+ P+GG+C+Y+SPP+S  ++  DPVH  +YI FMLGSCAFFSKTWI+VSGSSAKDV
Sbjct: 331 GPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDV 390

Query: 355 AKQLKEQQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLA 534
           AKQLKEQQMVMRGHRE SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLA
Sbjct: 391 AKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLA 450

Query: 535 VTIIYQYFEIFVKEQNEMGGSMSTLLF 615
           VTIIYQYFEIFVKEQ+E+ GSM  LLF
Sbjct: 451 VTIIYQYFEIFVKEQSEV-GSMGALLF 476

>sp|Q7T278|SC61A_HARAN Protein transport protein Sec61 alpha subunit
 sp|Q7T277|SC61A_DISMA Protein transport protein Sec61 alpha subunit
          Length = 476

 Score =  338 bits (868), Expect = 7e-93
 Identities = 167/207 (80%), Positives = 186/207 (89%), Gaps = 2/207 (0%)
 Frame = +1

Query: 1   RYRGQHSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSNKFRGNLIINLLGTWSDGEAG 180
           RYRGQ+++YPIKLFYTSNIPIILQSALVSNLYVISQMLS +F GN ++NLLGTWSD  +G
Sbjct: 271 RYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDATSG 330

Query: 181 --SRSVPIGGICYYMSPPDSLTAMFHDPVHGFIYIAFMLGSCAFFSKTWIDVSGSSAKDV 354
             +R+ P+ G+CYY+SPP+S  ++  DPVH  IYI FMLGSCAFFSKTWI+VSGSSAKDV
Sbjct: 331 GPARAYPVAGLCYYLSPPESFGSVLDDPVHAAIYIVFMLGSCAFFSKTWIEVSGSSAKDV 390

Query: 355 AKQLKEQQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLA 534
           AKQLKEQQMVMRGHRE SM+HELNRYIPTAAAFGGLCIG LSV+ADFLGAIGSGTGILLA
Sbjct: 391 AKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLA 450

Query: 535 VTIIYQYFEIFVKEQNEMGGSMSTLLF 615
           VTIIYQYFEIFVKEQ+EM GSM  LLF
Sbjct: 451 VTIIYQYFEIFVKEQSEM-GSMGALLF 476

>sp|Q8AY36|SC61A_PAGBO Protein transport protein Sec61 alpha subunit
 sp|Q8AY35|SC61A_NOTAN Protein transport protein Sec61 alpha subunit
          Length = 476

 Score =  338 bits (868), Expect = 7e-93
 Identities = 167/207 (80%), Positives = 186/207 (89%), Gaps = 2/207 (0%)
 Frame = +1

Query: 1   RYRGQHSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSNKFRGNLIINLLGTWSDGEAG 180
           RYRGQ+++YPIKLFYTSNIPIILQSALVSNLYVISQMLS +F GN ++NLLGTWSD  +G
Sbjct: 271 RYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDATSG 330

Query: 181 --SRSVPIGGICYYMSPPDSLTAMFHDPVHGFIYIAFMLGSCAFFSKTWIDVSGSSAKDV 354
             +R+ P+ G+CYY+SPP+S  ++  DPVH  IYI FMLGSCAFFSKTWI+VSGSSAKDV
Sbjct: 331 GPARAYPVAGLCYYLSPPESFGSVLDDPVHAAIYIVFMLGSCAFFSKTWIEVSGSSAKDV 390

Query: 355 AKQLKEQQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLA 534
           AKQLKEQQMVMRGHRE SM+HELNRYIPTAAAFGGLCIG LSV+ADFLGAIGSGTGILLA
Sbjct: 391 AKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLA 450

Query: 535 VTIIYQYFEIFVKEQNEMGGSMSTLLF 615
           VTIIYQYFEIFVKEQ+EM GSM  LLF
Sbjct: 451 VTIIYQYFEIFVKEQSEM-GSMGALLF 476

>sp|Q8AY33|SC61A_BORSA Protein transport protein Sec61 alpha subunit
          Length = 476

 Score =  337 bits (864), Expect = 2e-92
 Identities = 167/207 (80%), Positives = 185/207 (89%), Gaps = 2/207 (0%)
 Frame = +1

Query: 1   RYRGQHSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSNKFRGNLIINLLGTWSDGEAG 180
           RYRGQ+++YPIKLFYTSNIPIILQSALVSNLYVISQMLS +F GN I+NLLGTWSD   G
Sbjct: 271 RYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFIVNLLGTWSDTSTG 330

Query: 181 --SRSVPIGGICYYMSPPDSLTAMFHDPVHGFIYIAFMLGSCAFFSKTWIDVSGSSAKDV 354
             +R+ P+GG+CY++SPP+S  ++  DPVH  IYI FMLGSCAFFSKTWI+VSGSSAKDV
Sbjct: 331 GPARAYPVGGLCYFLSPPESFGSVLDDPVHAAIYIVFMLGSCAFFSKTWIEVSGSSAKDV 390

Query: 355 AKQLKEQQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLA 534
           AKQLKEQQMVMRGHRE SM+HELNRYIPTAAAFGGLCIG LSV+ADFLGAIGSGTGILLA
Sbjct: 391 AKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLA 450

Query: 535 VTIIYQYFEIFVKEQNEMGGSMSTLLF 615
           VTIIYQYFEIFVKEQ+EM GSM  L F
Sbjct: 451 VTIIYQYFEIFVKEQSEM-GSMGGLFF 476

>sp|Q90YL4|S61A2_BRARE Protein transport protein Sec61 alpha subunit isoform B
          Length = 476

 Score =  337 bits (864), Expect = 2e-92
 Identities = 165/207 (79%), Positives = 185/207 (89%), Gaps = 2/207 (0%)
 Frame = +1

Query: 1   RYRGQHSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSNKFRGNLIINLLGTWSDGEAG 180
           RYRGQ+++YPIKLFYTSNIPIILQSALVSNLYVISQMLS +F GN ++NLLGTWSD   G
Sbjct: 271 RYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSTG 330

Query: 181 --SRSVPIGGICYYMSPPDSLTAMFHDPVHGFIYIAFMLGSCAFFSKTWIDVSGSSAKDV 354
             +R+ P+GG+CYY+SPP+S   +  DP+H  IYI FMLGSCAFFSKTWI+VSGSSAKDV
Sbjct: 331 GPARAYPVGGLCYYLSPPESFGTVLEDPIHAIIYIIFMLGSCAFFSKTWIEVSGSSAKDV 390

Query: 355 AKQLKEQQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLA 534
           AKQLKEQQMVMRGHRE SM+HELNRYIPTAAAFGGLCIG LSV+ADFLGAIGSGTGILLA
Sbjct: 391 AKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLA 450

Query: 535 VTIIYQYFEIFVKEQNEMGGSMSTLLF 615
           VTIIYQYFEIFVKEQ+E+ GS+  LLF
Sbjct: 451 VTIIYQYFEIFVKEQSEV-GSVGALLF 476

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,376,927
Number of Sequences: 369166
Number of extensions: 1977498
Number of successful extensions: 6837
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6782
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6728100400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00431

  1. Dr_sW_009_G09
  2. Dr_sW_009_N08
  3. Dr_sW_011_F16
  4. Dr_sW_011_P05